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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97318_cuf2 >transcript:BL97318_cuf2-protein ID=transcript:BL97318_cuf2-protein|Name=transcript:BL97318_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=405bp
GQAVYVTIRAYNKAGLFVERSSNGVAVDSTPPVFVSRPSFDLQHGSIIAE
SQVWRTILSVTWEVSDPDSPIERQHLSVFSHHQTDLDIEPAQIVGSVRDY
KFTNLSLHDGNTYFVRVVTCNMAQLCTSAETDGILIVSTPPTVGMFAVRT
EHAAQLFRHRDGWMGYQQQNDTVPSHVRLAWLGFSDIHTGIETYHVTIGS
EFSGRDLSSGEVIIPHQNGTAHEDEGVIQTATVDINRNLTAGEHVYISLW
AVNKVGLESLEAHDAFEVVPSSPHSGVLSLVRRCDAESCEGDCTCAPQNQ
KCEPLDIGCNTVTDPSTYQQVLVYDVTDLSSQEPADADVTPSQCALAARW
EILPGGKQIKRFEWSAGQFGEAPGTLLLDTVNDRVWFDVGLRTRAVLSLP
RDGCE Run BLAST on NCBI mRNA from alignment at Sc0000207:307157..315359- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97318_cuf2 ID=transcript:BL97318_cuf2|Name=transcript:BL97318_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8203bp|location=Sequence derived from alignment at Sc0000207:307157..315359- (Branchiostoma lanceolatum)
TTGGTCAGGCAGTCTACGTCACGATTAGGGCTTACAACAAAGCAGGTAAG
TCAAGAAATGTACACTATTTCACTGTAAGGATTGGATCTAGCTATGAGTC
ATTGGTAGACAGTGCTAATCGCTGTGTCTACCTTTTGCCCATAGGACTAT
TTGTGGAGAGATCGTCCAATGGGGTCGCAGTCGACAGCACACCGCCTGTT
TTTGTCAGCAGACCTTCGTTTGACTTGCAACACGGGTCAATCATAGCTGA
AAGCCAGGTAAACCACATGACTTTATACCTTATCCTTTAATCATGTTAAC
ATCTTAACCTCTGACCGTTGCAAAGTATACACTTAACGTATTAGAAAAAT
AGGAATATTTCAACGTTTAGATTCTACCATTAAATAGTAGATGGGATAAG
CAGGAGGTTATACTTTTTCAGTTCAATAAATATTTTCTCTAACAGGTGTG
GCGAACAATCCTGTCCGTTACATGGGAGGTCAGTGACCCCGACAGTCCTA
TCGAGCGGCAGCACCTGTCAGTCTTCAGTCATCACCAGACAGACTTGGAC
ATCGAGCCGGCACAGGTAAGGTTTACTAACTTTACATTTAAAAAAAAAAA
CTACAAATTGCATCACTTTTGTGGAATCACTGCATAAAGTGTTTATTTCG
ACCTAACCCAGTAACCGAACGAACAACCGAATGTGTAATATTTCGAGCCA
CTAATAACAGTACCAAATGGGATGTCATGTGGCCCAACTAGTAGCAGTTG
AGCACTTGTTTCCAATCAGTTGCTAACTGGGAGACCCCAGTTCAAGTCCC
GGGGTCAGGACATCTCAGTTGGGGCTGTATCGTCTTTCGGAGGGGACGTA
AAATGGGGTTCCGTGCTCAAGGCTAGCAACCCTTTCCTGCACAAATATAC
CGCCTTGCTTCCTAATGTGCCGATAGGCACTACAATGGTCTAAACGATCG
AACGAGCCACAGAATGACAGCACCTATGTTCTAATGATACAGATTGTTGG
CTCGGTGCGGGACTACAAGTTCACAAACCTGTCGCTGCATGACGGGAACA
CCTACTTTGTACGGGTCGTCACATGTAACATGGCGCAGCTGTGTACGTCT
GCGGAGACTGACGGGATCCTGGTGAGTCGACTCCTCATTGAAAGTCGTGG
TTTTATAACATTGATATTTGTAAGATCTTTGATCATGAATAAATGATACT
TTAATTGACATCCTTAGAAAGTTGCAGAATATTGTTTCCTGTTGCTAATA
ATGTGTGACAAGGTTGTGGTGTCGAATGGACGAGTGACTAGTCTATTGGA
CACGAGATCGAGAGGTCACAGGTTCGATTCATGCACTAAGCAATACATTC
CTGGAATACATTCCTGGCTAGACGTTGTGTCCTTATCAAAAGCACTTAAC
ACAACTTTCCTCACTCCACCTAGTTGTAAAAATGCGAGGTGGTGAAAGGA
GAGAGATGGGTTCCGCCTTCTAATACCGTAACGTTAACCTAGATACAGTG
GATAACAAGCTACTACCACTATATATAGCTACGGCCTCAAAACTTCTATG
AGACCACATTTACCCTTGTATTATAACGTCATAAACTTAATGGTTTTTAA
CCCGTCATATCGTGCCAGATCGTCTCGACTCCCCCCACCGTGGGTATGTT
CGCTGTCCGTACCGAGCACGCTGCGCAGCTGTTCCGGCACCGGGACGGCT
GGATGGGGTATCAGCAGCAGAACGACACGGTCCCTTCTCACGTCAGGCTG
GCATGGCTCGGGTTCTCCGACATCCATACCGGCATCGAGACTTATCACGT
CACCATCGGATCAGAGTTCAGCGGCAGGGACCTATCGGTAGATATACCCA
CACTGTATTACTGATGACGTGTGACTTAGATAGTTTTCCTATATATGTCA
ACGAAGCGTTTCTCTACCACGCTGTTAAAGATTATGCTGCTATTGCCTAC
CTGCCTAAGTGCCTAGGTCAGGGACTGGCCCATTGCTCATTTCCGTAAGG
TTTCTGCATATAGCAAGGTCCAATATAACAATACAATAACAGTTTCTTAT
ATTCCGACTACCAAGTATTTACGTGAACACCGTAGAAAAATTCTGACTCA
GTGACTGCTTTCTCAATAGTTGTCATTCAATTGGTGATGAAGGAAGGATG
TGGGGAATATCATCTGATTTTGACGTCGATAGACAACTGCCGTAGACTTG
ATGTTGCTTTCGCTGTGGGAGAATGGTGGTTACGAGCGTTGGTCAAGTTA
CTCTTCTCTTATTATCTAGTATGTTTTGTTTTTTTGCCAGAGCGGCGAGG
TGATCATTCCCCATCAGAACGGTACAGCTCACGAGGACGAGGGTGTCATA
CAGACGGCTACAGTCGACATCAACAGGAATCTGACCGCAGGGGAACATGT
GTACATCTCTCTGTGGGCTGTGAACAAGGTATCGATGGCTTTCTTTCACA
ATTATTATGGTTGCTGCTTCTATGTATCTCCAGACACCATGAAACTAATT
AGATAGCCTCGAAATAATCATGTTGCTTGCAGGACAACTAACAAGAGTAT
ATTCAGGGGTGCCAAAGAATACATACGAATTTTACAGAATACATACGAAT
TTTACTGAATACATACGATCCATTACTAGAAACATACGATCCGTACGGAA
TACATACGATCCGGTACGCAGAAACATACGATCCGTACAGAATACATACG
ATCCAGTACGCGGAATACATACGATCCGTACTAATTTGGTTGATGCGCCT
GATCACGTGACATCGGCGGCAAATTCAAGATGGCGGACTCGGGAAAAGGT
GCGTGGATTCAGTTCTTCCTTACAATATCTTGGCTCTAAAGTACATTCAG
AGCTTACTCCAGCCTGCTAAACACCAAAAACATTACCCTTAACTAATGTG
GGCTTCTTAGGCGACATATTAGCCTGTATTTTAGACCAACTAGGAAGGCG
AGGCCGAGAATCGGTGTTAGCGCGATGGTGACTTTAAACTTTAAACACAT
GTCAACACTATGACCACATCCCTCATCAAAATACGCTAGATTCTACGGTT
GGTGGATAGCAAATATCAGGGCGGTTCCCCGGTTAATGCGTACTTTGTTT
AGTATGTAGTCTACGCTCCAGTATAGAAAGATTGTTATGGTTTGAAAAAA
CATTTGGGTGGGAGGGGGTCTTGCTTCATTATAATAGTAATAAAGTATTC
GCATGAAATTGATGTGGCTTCTATAACGTTAAGTTGATGATATAATGCAA
ATATGCTGCTTCCTACTTAGTACAAAATCAATAGATGAACTTATATTGTT
ATCTGTTAAGTGTTTTTTCAACTCAAGGTTAATTTCAATGTTATATATTT
CCCCTCTCATTTGCAGAAGTACATGATCTGGATCCTGCTCCAGCACCTGA
ACTGAATTTTCCATGCAGTCTTTGTGAGAAGACTTTCAAGAGTAAGAAAG
GACTTAACTTACATGTGCGGGGTTCTCACAACAACGATTACCCATTTCGC
TGCAACGTATGTGGAACTGGAGTCGTGCAAGAGCGAACACTCTGCCAAAC
ATCTGAAGAAAGGGCTGTCAGAATGCAAAGTATGCAAAAAAGGCTCCACG
AACGGTGGCTGGGGTCTGCTATCATGAACAGCTCCACAAGACAACTCCGA
CACTACACAAGTGCAATTTGTGAGAGAAAACATTCTACACAAGAAGGAAC
ATGCTGGAGTACAAGAAAACTCACACTTTACAGTTTAAATGTACTGCGTG
TGATAAGATATACAAATCTAACAAGTCTTTGATGAAGCATCAGAAAGCCA
TCCATACTGAGCATGCCAGCAAGGACTTTGTATGTGATGTTTGCAATAAG
GCCTTTCGTACAAAGGATTATCTTTCTCAACATCTATCGCATCACTCAAC
AGAGCGGAAGTTCATGTGTGAAGTCTGTGGGAAAACGTTCAAGACCAAAC
AGCACATGCAGGTGCATCAAGGGAGTAGAAACTGCAAACCCAGAGAAGAT
AACCATGATGAGGAAAGTATTTGGGGAACAACTGAAAACACTATTTGACT
TATTGTGTAACCTTCACCTAGTTCCATCCCCCATCTCATTGTGTAACAGA
TACATGATTATGTGTATGTAACATCAGATATAAATAATATATATATATAT
ATATAGTAGGAATATGGTAGTTCAAATTCTGTTTAGTTCTTGTTACCAAN
ACATAACCATTTCCAGCTCTTTAAGTTTGAAGAAACCTGAATTTTGGCTG
ATCTATCAAGCACAATTGTTCACAATACTTTTGGTGTATGACATGCTTTC
TATTACAAATATATTTATTGCACTGAGGTATCATGGCTTTGTCTCAACAT
CACTTACTGCTGAGATGCAATGTATTTCTTGAATTGAATACCACAATATA
CATACATTAAATAACCGGATCCTGAATACTGGTACAAGTGGAAGGGTGAT
TTTCTGTCAATGTAAAAAGGTTCATGTATTGTTTGTAGTGTTGTAGAGTT
TAGTTGTTTTTTTTCAATAGAGGCTAACTGAATTGTCCATGAAAAAGGAA
GCAAAATGACTCATACATGTACTTTATTACTTCATTAAGTCAGCCTACAT
TGTAGTTAACAAAGAAGTTTGAGGGTTACAAGGAAGGGCATATAACCTCT
TGCTAATACATTTTTAATCAAAGGCTTACAGTGCTGTAAAACTGATCTAA
AGCAGTATGTGTGTACAACTGTTAAGACGTCTGGCTAATGTCCAACCGTT
GCATTTTCTTTCAATATAGTTTGTTGTAAATGTAATATCCCGACTTGTTT
CTTTTTTTCTATTTAACAGTACTGGTAGCACAATAAGATAATATATTGTT
GAACAAGAACTTCCAGTTCAAGAATCATTATATATCATAATACATGTAGC
TTCTTCAGATTAGACAAGTTGTTGCATTTGCTAACCACACATCAGTTATG
AACGAAACAGACCTGTTTAGATAATATGCAATCTTACACATATACATGGT
GTGTTCATCTATCAAGCACACATCTTAGTACATTGGCTTTGAAAACTCAA
AGTGTCTCTAACACACTGTAATGTCAGCAATAAGGGTAAGGCATGTTAAC
AGGTGTGCCTGAATGTTCAACAAGCATTCCTAACAAATTGTAGCTCAAAA
GCTTACTCATAAAAGTTTGAGATTTTTGTGTGATTTGATTTAGGATAAGA
TTCTTACACTCCTCTGCTGCAAATTAGTCTGCCCTCCAAGCAGGGGCCAA
TTAAAACGTTTTTCGGGTGTATGGGAACAAGGAGGTTGATGAGAACATTA
CTGCTGTGTGAATATTACTGCAGCTGGTCCTAGGTCAAATTGTCAATATA
ATACAATCTTTTCATTAGAAAAAAATAACTGGTGGTATCTAAAGGAACAT
AACATTTTGTTTCTGAACTTGGGTGCTCCTTTAAATACATTTGAAGAACA
AGTCATGGTATTCAATGGGACAGCAAGTGAATTTATATGATACAGGACTT
ACATATTGAATTCAAACAAGGCAGATAGCCCCGGGCATCCTGGATAAAGG
ATTCAATTTGCCCTCATCGACCTTGTGGTGCTGTTGGACCCCTTGAACCC
CCTTGGCAGTCTGCTGGAGTGCGGAAATGCCTTTCCGGACTGCCTGTTTC
TTTCTTTCTTCGTCTTCTTTTACTGTCAAAAAGATGGTCCTGGAAAACCA
AGATATGGCAACGTGTTATCATAATGCGGGTTAACAACAGAAGTGCAAAT
GCAGTTAAATGTAATTTTTTCCTGTGCCTCTTGAAAATGTAACCGTAACG
TTACTACTGTGTTCTGATACTGCAGTGGTCATAATCAGTAACCGCAGATC
TAGAGTTTTTATGACTTGAAGCAGGTTTATGCTACAAAATAGATGTGTAC
GTAGCAACAAATGTGTCGCCCTCAATGGAGTTTTGGGCATACTTGTAATC
AGCCTTTATAAGATAGACGTAGCAACAGAATATGTACATTGAACTATACT
GAATTGTCAATTTCAGATAAGCCTTATCAATTATGAAATAATATAATAAT
TGTGTACGTGTGCCCCCAACTACGGTACCATAACTCCCAATTGGCATGCC
CCAATTAAAAAACCTGCCCCTTCCATACAGCATATCATGGTCTTTTATAG
GTAATGATTTGAAACAAGTACATATCTATCGTTTCTTAAATCGATAGCGA
TGATTTACAAAGTTTTCCTTGGTTAAAGTTTAACTGCTAGTATAACATTT
GCGATTCTCGGCCTCGCCGTCCTAGTTGGTCTAAAATGCAGGCTAATATG
TCGCCTAAGAAGCCCACATTAGTTAAGGGTAATGTTTTTGGTGTTTAGCA
GGCTGGAGTAAGCTCTGAATGTACTTTAGAGCCAAGATATTGTAGGAAGA
ACTGAATCCACGCACCTTTTCCCGAGTCCGCCATCTTGAATTTGCCGCCG
ATGTCACGTGATCAGGCACATCAACCAAATTAGTACGGATCGTATGTATT
CCGCGTACTGGATCGTATGTATTCTGTACGGATCGTATGTTTCTGCGTAC
TGGATCGTATGTATTCCGTACGGATCGTATGTTTCTAGTAATGGATCGTA
TGTATTCAGTAAAATTCGTATGTATTCTGTAAAATTCGTATGTATTCTTT
GGCACCCCTGATATTACAATTAAAACAAGAAATCAAAGATCTCATACCTC
CGTGACATATGGTTTTGTAAATTTCTTGACAGATTATAATAGAATAAATG
TCCATTTAAACATGCTATCATTGGGTTCCTAGATCCTGACTTCACCAACA
GCAACATTCATTTCCTGCGGGAACCACAACCAACCAACCAAACAAACAAA
CAAACAAACAGACAGACAGACAGACAGACAGACAGAAAACATTTAAAAAC
AAATAATTACAAAAACGAATTGCATGTAACAAACAGTTGATGAGCACTGT
TGAAGATGAAAACCTTATGACTCAAGGATGGACTCTTATTTCTCAGGTCG
GGCTGGAAAGTCTTGAGGCACACGATGCCTTTGAAGTGGTGCCGTCCAGC
CCTCACAGCGGAGTGCTGTCATTGGTCAGGAGGTGTGACGCGGAGTCTTG
TGAAGGAGACTGCACGTGTGCACCACAGAATCAAAAGTGTGAGCCACTGG
ACATAGGCTGTAATACTGTAACAGGTAAACTGCGAGTCATAAACATGCAA
TTCGTAGTTAATGACCTTGTAGAGGATTGGTTGATCTATTATCCACGTCC
GTAGGAAAGAGAAGTCGGTTATGTGGCGTCGCTGTAGATCAGAACGAATA
GGGGTCGGGTTTGGTACCCGCTATGCCCAGACGTTGTGCCCTTGGGAAAG
ACACTTAACATGATATACCTACCATGACGGTGGAGTGACGCCCAACATGG
CTCTTCGGCTAATCTGTCAAAAAGTGTGCCAAAAACACATACGGATTTGA
TGCACTAATGTGCCAACATCTGCACATTTGTCACAAAGAGTCGCATTTCT
TATTCTTATGAAATAGGCATATAGAAGGATGACATTGGCAATCTAGAGTT
AGTATTTCATTCACTTACCGGAGACTCTTCTAGAAATGAAGTAATCACAA
CTATTGTGATCCCTGACCACGTCTAAAGTTGCGTGTGTACTTACATTTAA
TATAAGTTGAGGATAAGTAAAAACCGTGGATACAGTGTGTACAACATTCG
ATTCTCCCTAGACCCGTCCACATACCAGCAGGTCCTGGTGTATGACGTAA
CAGACCTGAGCAGTCAGGAACCTGCGGATGCTGACGTCACGCCTTCCCAG
TGTGCACTAGCGGCTCGATGGGAAATTCTTCCAGGAGGAAAACAGATAAA
AAGGTAATCTTAAGTTACATATACTTCACCTGAAGACATCTTACCTGGTA
CAACAACGCTATTCTGACGCTTGAACACCTGATTTATTCTTTTAGTTGGT
TTGCTTGTTTATTTCTTCGTTTGTATGGATGTGTATTTGAAGCAAGATAC
ATCCCCAATGCCACAATTTCTATAAAATATATGTCATTTCGGTGATTCAT
ATCGTTTGATATTTTTGAAGGTTTGAGTGGAGCGCTGGTCAGTTTGGTGA
AGCCCCCGGAACTCTTCTGTTGGACACCGTGAATGACAGGGTTTGGTTTG
ATGTGGGCCTCAGAACCAGGGCTGTGCTGAGTCTTCCCAGGGACGGATGT
GAG Coding sequence (CDS) from alignment at Sc0000207:307157..315359- >transcript:BL97318_cuf2 ID=transcript:BL97318_cuf2|Name=transcript:BL97318_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000207:307157..315359- (Branchiostoma lanceolatum)
GGTCAGGCAGTCTACGTCACGATTAGGGCTTACAACAAAGCAGGACTATT
TGTGGAGAGATCGTCCAATGGGGTCGCAGTCGACAGCACACCGCCTGTTT
TTGTCAGCAGACCTTCGTTTGACTTGCAACACGGGTCAATCATAGCTGAA
AGCCAGGTGTGGCGAACAATCCTGTCCGTTACATGGGAGGTCAGTGACCC
CGACAGTCCTATCGAGCGGCAGCACCTGTCAGTCTTCAGTCATCACCAGA
CAGACTTGGACATCGAGCCGGCACAGATTGTTGGCTCGGTGCGGGACTAC
AAGTTCACAAACCTGTCGCTGCATGACGGGAACACCTACTTTGTACGGGT
CGTCACATGTAACATGGCGCAGCTGTGTACGTCTGCGGAGACTGACGGGA
TCCTGATCGTCTCGACTCCCCCCACCGTGGGTATGTTCGCTGTCCGTACC
GAGCACGCTGCGCAGCTGTTCCGGCACCGGGACGGCTGGATGGGGTATCA
GCAGCAGAACGACACGGTCCCTTCTCACGTCAGGCTGGCATGGCTCGGGT
TCTCCGACATCCATACCGGCATCGAGACTTATCACGTCACCATCGGATCA
GAGTTCAGCGGCAGGGACCTATCGAGCGGCGAGGTGATCATTCCCCATCA
GAACGGTACAGCTCACGAGGACGAGGGTGTCATACAGACGGCTACAGTCG
ACATCAACAGGAATCTGACCGCAGGGGAACATGTGTACATCTCTCTGTGG
GCTGTGAACAAGGTCGGGCTGGAAAGTCTTGAGGCACACGATGCCTTTGA
AGTGGTGCCGTCCAGCCCTCACAGCGGAGTGCTGTCATTGGTCAGGAGGT
GTGACGCGGAGTCTTGTGAAGGAGACTGCACGTGTGCACCACAGAATCAA
AAGTGTGAGCCACTGGACATAGGCTGTAATACTGTAACAGACCCGTCCAC
ATACCAGCAGGTCCTGGTGTATGACGTAACAGACCTGAGCAGTCAGGAAC
CTGCGGATGCTGACGTCACGCCTTCCCAGTGTGCACTAGCGGCTCGATGG
GAAATTCTTCCAGGAGGAAAACAGATAAAAAGGTTTGAGTGGAGCGCTGG
TCAGTTTGGTGAAGCCCCCGGAACTCTTCTGTTGGACACCGTGAATGACA
GGGTTTGGTTTGATGTGGGCCTCAGAACCAGGGCTGTGCTGAGTCTTCCC
AGGGACGGATGTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000207 | genome | Sc0000207:307157..315359 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97318_cuf2 |
| Biotype | protein_coding |
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