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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97379_cuf0 >transcript:BL97379_cuf0-protein ID=transcript:BL97379_cuf0-protein|Name=transcript:BL97379_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=314bp
YTERDGTNYKVFGQAMTYSDAQQACAVDGGHLADEKTQELHDFLVSLIQE
SGAGGDYWIGLQGVRIDNTWTWSDGTPISDCSFTNWAPGEPGNTPDSPVC
GQLWTGAGFKWDDDFCHFQKNFICQIGPGEENACDPNVVCSERQCLDGSC
LSEAHWCDGAFADCTNGEDEADCEGDGGGTTAETLTTVEENGSIIVTTPS
GSLTTEGQPDQATPPGGLTTEGQPGQATPPGVLTTEGQFDLATPPSVLTT
AGQPDLATPPGGTTGIAALTTDNGDESGTEGDEYSGATVATTGGGVLASI
ILAHVIFVYYDIFA Run BLAST on NCBI mRNA from alignment at Sc0000225:191352..198758- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97379_cuf0 ID=transcript:BL97379_cuf0|Name=transcript:BL97379_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7407bp|location=Sequence derived from alignment at Sc0000225:191352..198758- (Branchiostoma lanceolatum)
GGTACACTGAGCGTGATGGAACCAACTACAAGGTGTTTGGCCAAGCCATG
ACGTACAGTGATGCTCAGCAAGCCTGCGCAGTAGATGGAGGCCACCTTGC
CGATGAGAAGACCCAGGAGCTGCACGACTTCCTCGTCTCCCTGATTCAGG
AGTCTGGTGCAGGCGGGGACTACTGGATCGGGCTTCAGGGTGTGAGAGTG
AGTGACACAGACGATAGAAATGCCATTTTTTTTTCTGCTCTATACCTTTC
TTTATCTGTTTTAAGATTTCCATTTTGTATTTCTGAACCATGTGCAGAAG
CCGCATCAAATTGTTACTGCTATAGGATCGAACAGCACATTAAAGTAAAT
TCACAGAACACCCAGTTCTGAGATGTTGGTTTTATACAACGCCATTTCGT
AAACAGTTGATTACGAATGTGCATCAAAGGTTCGACCATTGTCGACTGTG
TGGCAGTTTCCATCGCTTAGAAGTACTAAACATGTATGATGTGTGTATAT
ATGTGTGTACATTTTGTACAACGCCATTTCGTACAAAGTTAATTAGGAAT
GTGCATCCAAAGCATATACTTGTTTCTTGGCATAGATCATTTTTTCAAGG
TCGCCATACCACAATGATAGCAAACCAATACAACAATAATCAATGCATAT
TAATGCAGTAAAAGTACAAAATAAAGTAAATCAACATAGAACTTAAAATA
CAAATCAGCCTAGCAACATACACGTTCTGAGTGATAAGTTGTTAAATCAA
TTCGGCACTTTGTAATAGCCATAAGGTAACATGCAGTAGGATAAAGTAGG
CGTGGCCTTGTTGCTAGGCAAATGGCGCAACCACACGATAATGACCACGT
ACAAGACTAAAGGTTTTGCGGAATCCATTTCCCATGATTATGTAGATTTT
TTTTCTATTAAAGAGAGATGTATTATTGTAATCAAGCACAAGCATTACGA
TATACAGATTGACATCACGATGCCCGGTGGATGCCAACAAACTCCCGAGG
GTGGGCGGAGCAGTACCAAATCCACTAAGACACCCAGTCTCGGGATCTAA
CTATTTCAGAACCCAACTGTCTTACCGAAGCAAATATGATAAATACATAT
ATTAAAAAGGACATGCATTTTTGTTGACTTGAAGGTGTTTGAGGTGAAAT
GCAAGAGGAAGAAATTGAAATGTATAGCCTCCTTGACCCGACCATGACAA
ATTATCTGGCACGTCTGACACGGTGGGACCAGTGTTGCGTGTCACTGGTA
ATTATAAGAAAACAAAAACTGGCACCTTTCTGGGTCAGGCCCTGGTGGCC
TCCCAAGGAGTCGGGGAGTACTAAGTAACGAATAAATTGACTACGTTGGA
GATGCCCACAATTTCATCCAATCAGGTTAATTGAACTTCACCTACTGGTG
GGCGTCTCAAACTTAGTCAATATATTCGTTACTACGTACACCCCTACCCA
TTGGGAGGCCACACCATGTGGACTTAGTCACAAGGAATGCACGCCCCTGA
TTGGCTGAGGAAAGACGGCCGGGTTCTAATGTAATCATACACAATCATTG
TAATATATATAGATTGACAACACGTGGACCTGGTCTGATGGGACTCCAAT
CAGCGACTGTAGCTTCACTAACTGGGCACCTGGAGAGCCCGGGAATACTC
CGGATTCACCGGTCTGTGGTCAACTCTGGACAGGTGCAGGTTTCAAATGG
GACGACGACTTCTGCCATTTCCAGAAGAACTTCATCTGCCAGATAGGTGG
TTTTTCACTCCACGATATAGTCTTTATTATATGGCATATATGCTATTCAT
CTCCAAGAAAAATTTGGGAATTTTTTTTTTGTGTTTGTGTTTGTTTGTTT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAGTGTGTGTGTGTGTGTGTGCGTGTGATCCCGGATTGTCGGAGTC
ATCATAACTCAAGAACCTCGAGATGGATGACAATAATATATTGTAGTTAG
GGAGGTGTTGAGAAGACAAAGCTGGAACTGCAAGGGGAGGGGGGGGGAGA
TCTTCCAAGGAGAATAACTGAAGAGGAACGTTGAATTTTCCATGAGATTT
AGCATGATGGTACCTTCGACTGAAATATTTCTAATGAAGTGATAATTATG
CAAACTCGGACTTGAGTCACATAATTAATGAGGGAAATCCACATTTGCAG
TGTTTACCATTGAAGAAATCAAATACACGTGACGTATGCAGTTTATGACA
GGGGGAACATTAACAGATACCAATTAGGCAAATGAATTCCTATGATTCAC
CAAAATTGGTAAACATTGGACGATCAATATTTCGACATATGTAAATCTGT
TTAAGCTGTACATGGCCAAGCATAGATTAAGTGAATATGAAATAATTTGC
AATTGCATATAACCAGAATACTTAATGGAGATATGAGGTATCCGAACTGT
TGTTTGTTATGTTATAATAGGATTATAGATGAATGGATATATTCACTAAT
ATCTATTGAGGGAGGTAGTAAATGGTGTAAATTCCTGCCATTTTAACTTT
TCCAGGTCCTGGTGAGGAGAATGCCTGCGATCCGAACGGTAAAAGTTTAC
ATCTTGACTTCAATAATCATGTCTAAACCAATATACTGATATCACAATGC
CCTCTTTTGATTATTTTCAGTTTAAAATACGCAATTTCACATCAGTACGT
CCTGTTTTATTTATTTCTTTTATTATCAAGGTTTCCAATCCGTCCTTCTT
TTTCGTCTTAGCATTGATGCCTGCAGTCTAAGTTACAATCCCTTTCCTAG
TTGTCTAGTTGATTGTAAAAATCGTTGCTGCGGGTAACAATGCGAACAAG
CTTAATGATACACTGCCGTGAACACAGCCAGTACCGATCTTTGGTTCTGT
TTTAGAAGATTCTTTTCAAACGTAGGACGCACTTTTAAACCTTTCATAAA
GCTTTCCGATGTGAAATTCTCTGTTATGTTGTTTATAAGGTAAATGAAGT
CCCATAGCTTTTTCCGGGCCGTAGCTAGGGGTAGTTGGTTGTTATCCGCT
GTGTTTAGGTCACGACATTGGAAGGCGGAGCCAATCCCTCTCCTTTTACA
AACATTTACTTCCCAACCGAAATCACGTACCCGTTTTCGATCCCAGGACC
TCTGAGTTCTGGGCCAAAGACCTTAACCATTACAATAACACCACGCCAGA
AGCAAAGCAATATGTGTGATTAATGAATTCTTGTAATAAAGTTTATTTCC
CCCCTTCCTGTTTGAAAGGAGTGGTAATGAACTTGCCTAAGCTGGTTGAA
ATCGCATTTCATGTTTGTGGTCTCATAATATGAATTCAGAGGCGAGTATT
GATGCATGCCAAAAACATGTACCAGAAGGCTACTTTTTTCAAGTACCTAC
CTTCTTTTCACAAGTAGTGGTGTGTTCGGAGCGCCAGTGTTTGGACGGTT
CGTGCCTCAGTGAAGCCCACTGGTGTGATGGAGCGTTTGCAGACTGCACG
AACGGCGAGGACGAAGCGGACTGTGAGGGGGATGGCGGGGGTAGGTATGG
AATGTTGTAGGTGGAATACTGCCTGATAGATGAATCGATGTGGCTTTTTG
TGGCGCAATCGGTAGGGTGTTTCGCCCACAGCCGAGAGGTCCCGGGCTCA
AAACCACCGATATGCCCCGATGTTGTGCCCTTGGGAAAGGCATTTAACAC
GACTTTCCTCACTTAACTCAGGTGTAATGAGTACCTAGCTTCTGTTAGGG
ACGTCCCACGGATAGGAAGTTAAATGGAGGTCCTTTGTCTGAGGAGAGCC
ACACCTCGAGCAGGTTAAAGAACCCACCACACTTATCGAAAAAAAGTAGG
GGTTCTTCCCGGTGTGACTGGTTCAAAACCTACAGTCCTATGGCCGCACA
TGGGTTCGCCCTTAGTATTAGCCTCCGGCTAGTTGGGCAATCCTGACATG
TACATGCTGAACCAATGAATGAATAGATAGATGAATCATTAATGAAAAGG
TATTCATACCGTAATTTTTTTTATAACCGGCTCACCCGCTAGAGATCGAA
AAAGGGACGCTATAAAAAGCTGCCAGTCCAGGTGAAACTGTGTAAATATT
GTACAATGGATACTGCCCTCATTATAAGGATGAAAAAAACAAGCTTTTCA
AAACAACCAAAACACTATTTCTGAGCTTTCAGCATCTACAATATCTTTGA
TTTGATTAAAGACTACATACACGAAGGTAGAGAAAGGTTTTATCAAAAAT
ATGAGTTTCGGTATCATCCATCTATAAGACAATAACAAACTAAACGAACA
CAAGAGGTTGCTGTCTTGCAAACTAAAATGTATATTGACTTTGTTCCAGG
AACCACAGCAGAGACTTTGACCACCGTAGAAGAGAATGGTAGCATAATAG
TTACAACGCCTTCTGGTAGCCTGACCACCGAAGGACAGCCTGACCAAGCC
ACGCCTCCTGGCGGTCTAACCACCGAAGGACAGCCTGGCCAAGCCACGCC
TCCTGGCGTTCTGACCACCGAAGGACAGTTTGACCTAGCCACGCCCCCTA
GCGTCCTTACCACCGCAGGACAGCCTGACCTAGCCACACCCCCTGGCGGT
ACAACAGGCATTGCAGCCCTGACAACTGATAACGGTAAGAAAGCAGACCT
CGTTTGGTGGGAATGGTGATGTCTCTGTGTTTTTTATATGCTCCACCCTG
CTGTACACGTATTCTAGTGCCCGCTGGGGGTATTTGTGCATCCATTTGCA
ATTCCACCATAATGTATACTGCTCTTCATTTCAGGAACCATACATTATAA
GCGTATGTTAAAATACCATTTTCAGAAAAAAATCTTTTGTTGCAGCTTGA
TATCACCTTCTATTACGCTATATTATCACCACTATATGTATTCCTTTGCT
TATCACCATGACCTGTACTTAGCTTGTTTAAGGAAAAATGTACAATAAAC
GTCTTTCATTAATTCATCAAAAAGGGTTACTGCATAAGTATATTAATAGC
GACAAAGCTGACATTTTATATCGCTTGTCTCATATTGTCTCTTTATTCTT
TTTGCCTCACTTGAAACAGTGCCATCCCATTCTAATAGATTACTTTTACA
TGCCAGATTTGTAAACTTAATAAAGAAATTCCGATCCTTCATGCTAGGTT
AAAATGGTCTTAATTTAAAAAAAAATAATAATAAAAAGCAGGGGAGGTTT
GCAGCAGAATACCAACGCAATAGAATAGAAATGTTTTATTTTTAATTTTG
ACACATTTTTTTCTTCTTAAAAGGAGATGAGAGCGGGACAGAAGGAGACG
AATGTGAGCTGCTATGTTCTATTATCTTCTGACCTAATAAATCATTGAAC
ATTATTCTAATTTCAGTGTCACTTAGGCATGATAAGCGACAATAAAGTAT
AATTTTCGATATCACATACTCATACAAAGGATAGTTATTATTCATATTTC
GCTCAAAATTAGATGTACAATTTGATATGCTTCTTAGAATCAAAGAAAAC
GACTGTTTTCATATTTTGTCAAAATCTTAAAGTATTACTTTAAAAAAATC
ATCCTCCACGAAACAAAATTATTATGGGGCACAAGCCATACATTGTTCAT
GATTTTTACAAAAGTGCAGTACTATTTATTCAAAACAAAATCCTTACATT
ATTTTTTTCTTCGGACAGAATTTAATATAGTCACGGTTTACTTCTGCTTG
TTTTTTACAGACTCGGGAGCAACTGTTGCTACCACTGGCGGCGGCGTGCT
GGCCTCAATCATTCTGGCTCACGTTATCTTTGTTTATTACGACATCTTCG
CATAGGCCAGATCCCGCCAAAGGACCAGCATATTACAGCACAGTTGAAGG
ATAGTATCGTAATGATGTAACCTGCATGCACGTCGAGACAAAAGCTTGAC
TTTGATACACAACGACACTCTTCTCTCAAACGTCGAATAGGATTGCGGGA
AACAGAAGTGTGCTCTTTGAAGGAATGTGGTTCTTAAAATGAATAGGTCT
ATGAAGAATATTTCTTATTGCACACTATGGCATCATGGTAGCATCCACAT
GTATGTTCTCCCACAGAATATAGTTTTCCCCTTCAAATAGATTCCATAAA
TTAAAGAAAAATAATGATATTTGAATACACTCCTTTTCCGAACTCTTATG
GCAATATTCCGTTTAATCGTGACATCGTAAAACTATTCGCGAGAAAAAGA
AATGTTTTCTTGTTTGATGATCGAAAACCAAATACCAAAATATCAAGAGC
AAATTGTATAGTAAAATATAAACTCTAATCACATTTCTTAAACCTAGCAG
TTGTACAAAGGAGTTAGTTAAACATCACAGCTCGATCCCTTTAAGAGTTA
AAAAGGATTGTCTAACATAAAAAAAGACGCTACCCGTATCCTTACTAGAC
ATTGATGAGATGGTGTTGCTTGGTATTTTGATTATCTTTAAAAATCTTTC
CGGTCGCCGCCATTATCATGAAAGTTTTATTACTAGACTAGCCTACAAGA
CTACATACTAGTCTTTGATAGTTATGTAAGCGTAAGCAATTCTTTATCTC
CTTCTTTTCAAACTTTTGTCAGCACTGTAAACTCATACTAAGTACCTTGG
TAAATTCTTTTATTAAAATTCGTGAAACAGTTCCTGGTAGTGATTCACTC
TTGACTCCTTATTAAATCTTGCAAATGCAGCAGTCAAACACGCTGACTTC
TTTTATTAAGATCATGATATATATATAGATAGTTTTTCGTGATTACCGAA
TTCTCTTCCAGTACGGTAGATGACGGCGGGGTTAGCTCTGCTCGATAATA
CCAGGATTGTAAAAACGGGATGAAATTACAGACACAAACATATCTGTTGT
ACAAAATCGCCATCTGAATGAGCCTGACTGTTTTAGAACTACACAGCAGG
TATAAACAATAGAAATGTTTTCAACAAGCCCTAACTATGTTTAACAACTG
ATATGAATGATCTGCTACTGCAGTAGCCGTATGGGGTTGATGGAGGAGAT
AATAGGTAGCTAACTTTTTCAGTGTATTACATTTTGTTTATCTCATCTTT
TTATGACTAATTCCTCATAATCTACTAAAAACTAATTTGGTATCTCTTAT
ATGGGATGTTATTAATTCATTACACTTGGAATTATTGGCGGCTCAGACGG
AATGGGCTACATTCAGTTGTTTTAATTTATGCACGTTTCGCTAATGATCG
ATGCAACAAAAATGAAGCAGAGTAAAGTGAATAGAATCATTCACTTTTTT
ATTCTACACTTGGATAAATTATACAGTAATAAAAAGCAATTTATTGCCGT
GTTTTGTGGGTTAAATGATAATATTCATTGTAATATGGGCCGTGATACTT
TACTTTGAGTTGAAATGCAGCAATATGAGTGACCTGTTACTCCGATATAG
ACATGGG Coding sequence (CDS) from alignment at Sc0000225:191352..198758- >transcript:BL97379_cuf0 ID=transcript:BL97379_cuf0|Name=transcript:BL97379_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=945bp|location=Sequence derived from alignment at Sc0000225:191352..198758- (Branchiostoma lanceolatum)
TACACTGAGCGTGATGGAACCAACTACAAGGTGTTTGGCCAAGCCATGAC
GTACAGTGATGCTCAGCAAGCCTGCGCAGTAGATGGAGGCCACCTTGCCG
ATGAGAAGACCCAGGAGCTGCACGACTTCCTCGTCTCCCTGATTCAGGAG
TCTGGTGCAGGCGGGGACTACTGGATCGGGCTTCAGGGTGTGAGAATTGA
CAACACGTGGACCTGGTCTGATGGGACTCCAATCAGCGACTGTAGCTTCA
CTAACTGGGCACCTGGAGAGCCCGGGAATACTCCGGATTCACCGGTCTGT
GGTCAACTCTGGACAGGTGCAGGTTTCAAATGGGACGACGACTTCTGCCA
TTTCCAGAAGAACTTCATCTGCCAGATAGGTCCTGGTGAGGAGAATGCCT
GCGATCCGAACGTGGTGTGTTCGGAGCGCCAGTGTTTGGACGGTTCGTGC
CTCAGTGAAGCCCACTGGTGTGATGGAGCGTTTGCAGACTGCACGAACGG
CGAGGACGAAGCGGACTGTGAGGGGGATGGCGGGGGAACCACAGCAGAGA
CTTTGACCACCGTAGAAGAGAATGGTAGCATAATAGTTACAACGCCTTCT
GGTAGCCTGACCACCGAAGGACAGCCTGACCAAGCCACGCCTCCTGGCGG
TCTAACCACCGAAGGACAGCCTGGCCAAGCCACGCCTCCTGGCGTTCTGA
CCACCGAAGGACAGTTTGACCTAGCCACGCCCCCTAGCGTCCTTACCACC
GCAGGACAGCCTGACCTAGCCACACCCCCTGGCGGTACAACAGGCATTGC
AGCCCTGACAACTGATAACGGAGATGAGAGCGGGACAGAAGGAGACGAAT
ACTCGGGAGCAACTGTTGCTACCACTGGCGGCGGCGTGCTGGCCTCAATC
ATTCTGGCTCACGTTATCTTTGTTTATTACGACATCTTCGCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000225 | genome | Sc0000225:191352..198758 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97379_cuf0 |
| Biotype | protein_coding |
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