transcript:BL97442_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97442_cuf0
Unique Nametranscript:BL97442_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97442_cuf0

>transcript:BL97442_cuf0-protein ID=transcript:BL97442_cuf0-protein|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=336bp
MDDGKPFKLREAKHDDYEAVMKMSSIDTFRDGFDYLPAKFHQYVDDPDVF
VIVTEKSDSLVAISVYMFNDDGEALLVKTARQNPNYKGMGASRRMRQATP
MLFKDFLLQRCTPATLVQGVVEAGRMDARKLVLRHLGFTKDKEKCNFDVM
YFQSDVSAIQSGLTSSNTTYLPPLTPYRHPDLHRLLPPAFSAAVLPEGHV
LVDWDPYSISEANMKKFVEAGCYILVDPTEPVAKSLSFGGSYMTPRGRVY
HMDIHCKDEALCKAHIKNHVKIACSQYTGMKTFCIMVIDQTLKETVLKYC
VENLTLCHLPHDHTYTLYETDFTTLVKAAIGIKAKY
Run BLAST on NCBI

mRNA from alignment at Sc0000010:862571..866744+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97442_cuf0 ID=transcript:BL97442_cuf0|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4174bp|location=Sequence derived from alignment at Sc0000010:862571..866744+ (Branchiostoma lanceolatum)
GCCTTTGGACTTTGCCCGTTCCTTCCAAGTCGCCCTTAAGTCGGTAGGTG
GCGTTGTGCAATCTTGTAGTGCGTAAACACCTCTTCTAGATTGTGATTCG
AGGGTGGTGAACTCTTCAACTGTCTTGGTCTGTACATTGTTTGGTTTGTA
CATTTTAGAAACTGAAATTCACACCATACAGGCCTCTGCTTAAAATGCAC
CCAGAATAAAGCAGGACGAAAGTCGTCTATAACAATAGTGAATAGGGTTC
AAAGGTCAAGGTGCAGGGCGAAAATTGTGAGTGAGGTGTCCATCCATAAC
GGCGAAGGGTGGCGGCAACTTAACTGTGCGATTTTAACAAGCCACACAGA
GAAGTACGATGGTAAGTGGAGGTTTGCCAAACATTTCCTTCTAACAAATT
CACCTCTATACATCGATGAAGGTTAGACATCCATGAGTAACTGCTTTTAA
AGCGTCGATCAGGGACATTAGTAGGGCGTCTAGTAGGACCATGGTAGCAG
ACAATCTTTTTACTTCCGCCTTCTAATATATGGTCTGCTACAGTACCGGT
CGTAGGATCTACAGTTAATGATTGGAAAGTAGTCTTTATAAGATCAAATA
TCAGTTATACCGACAAAGCAAAAAAAAATCTTAGTGATCTCTACTGAAAC
CTCATATCGTAGGACGACGGCAAGCCGTTTAAATTGAGAGAAGCGAAGCA
TGACGATTACGAGGCGGTGATGAAAATGTCGTCTATAGACACCTTCCGTG
ACGGTTTCGACTACCTGCCAGCCAAGTTTCACCAGTATGTGGATGATCCG
GACGTTTTCGTGATTGTAACAGAAAAAAGCGACAGCTTGGTAAGTACACT
GCAATAATCTTATCTACTGATATACGATATTAGACTTTTTAGGCTGGGCC
TTGATCTGAGATAAACAAACCCGTGTTCCCGATTTAAAATGCGCATTTAG
GCTGATGTACTTTGGATAATATGTTGAAGCTGAAGGCCACTGAGGCATAA
AAACACGTCTGTACAATGTAACGTTACATGTATCAAGCATGGTCTGGACA
AGAACTGTTTGCAAGCAAGGGACCTCTACATTGACCTCGCATGCGTAGTT
CAAACCGTGAACCGATGCAAATTATAACCGCAGATATAGATGTCACAGCC
GAACAGTTTCAACATGGGGATACACAAATTTAAAAGGAAAGGAAACCACA
GAAAATTAAGAATCAAATTAAAACGTGATTGTAGACATTCTCACATTATC
AAAAGGACGTCGTTATCGGTTTTTTGTGTTGTTGCACATTACTGGACAAA
TATCCACTGTGTATACCACTCACAAAAGACTATTCCATGCAGGTAGCGAT
CAGCGTTTACATGTTTAACGACGATGGTGAAGCTCTACTGGTGAAAACCG
CTCGTCAAAACCCCAATTATAAAGGAATGGGTGCCTCTCGTCGCATGAGA
CAGGCCACTCCGATGCTTTTCAAGGATTTCCTACTCCAGCGATGTACGCC
GGCAACTTTGGTACAAGGTGTTGTTGAAGCTGGCCGGATGGATGCTCGCA
AACTTGTCCTGCGGCACTTGGGGTTCACTAAGGACAAGGAGAAGTGCAAC
TTTGTAAGTACATATTATCATGTGGGTTATGTGGTGTAATGGCAGAGCGT
TCGGCTCAGAACCAAGTGGTCCTGGGTTCGAATCCTGTCATGTCACCGAT
CTTGTGCATCTTGGAAAGGCACTTTACACGACTTGCCTCACTCCATCCAG
GTGTGAATGGGTACCTGCCAGGTTGGGGAAGGTCGTATTGAGGTCACCTG
GTGGCGCCGAATGGCAGCCGCCCAAACCCTTGCGACAGTGCCACAAAATG
CAAGTGTGGAACAAATATGTATGTGTTGACCATGTGTATTATGTGATTGT
AAACCCTGCACCAATTCAGAACTAGATCGGGTTTTATTCATCCGCGTTGA
TAGTGAGGTGTCCCTTCACCCGAGATTGACCTTTGTAGTGTTCTGTGGCT
GTTGTTTTCTATGCCTCGCACCGTGGATCATTACAGAAACCTAAGTACTA
GAATGTTCTTTGTAATTAGCTCGATTATACGCTAGGTTTTCCTCTTTCTG
AAAACATCAGTCGTTTCAGATTTTTTTACAAGTTTAGCCAAGTTTTGCGC
ATCATTTTTGACGTGGAAATAATGTTGTCTTCTTCTAATTCACCAAAATT
AGAGAGGTTGAAGAAACAAAACTCAATTGGTCTTGTAGCGGAAGAGATAT
ACTTTCATCCCTTACATAGTTGATTTACTTTGGAATGATTTCCTGGAAGA
GTCGGTAGCTAGACTAGAGGATCGCGGTGCAGCCTCGAATTGAAACCCCA
AGTAAACTGGGGTGTGCTCCCTTAATTGTGATGATTCATGATTCCCAAAG
AATGGGTGACCAAGAAGGATAAGTGTTACTGTATGAGGTCTAGTGGAATG
TGTTTTGTCATGTCACCCGTATATAAAGGACGCACGAGTGTTGGTTGCGT
TTTAGTTATGTCCTTTCCTTTTCAGGATGTAATGTACTTTCAGTCTGACG
TGTCTGCCATCCAGAGTGGTCTCACATCAAGCAACACGACCTACCTTCCA
CCGCTCACTCCCTACCGGCACCCCGACCTCCACCGCCTGCTGCCGCCCGC
CTTCTCAGCTGCCGTCCTGCCTGAAGGCCACGTACTTGTTGACTGGGATC
CGTACAGTATTTCTGAGGCCAATATGAAGAAGTTTGTAGAAGCGGGCTGC
TACATCCTGGTCGACCCGACCGAACCGGTCGCCAAGAGTCTTAGTTTCGG
TGGAAGTTACATGACTCCTCGAGGCAGGGTGTATCACATGGACATACACT
GTAAGGACGAGGCTTTATGTAAGGCTCACATCAAAAACCACGTGAAGATC
GCCTGTAGTCAGTATACAGGCATGAAAACCTTCTGTATCATGGTGATAGA
CCAAACTTTGAAGGAAACAGTCCTGAAATATTGTGTAGAAAATCTGACCC
TCTGTCACCTGCCCCACGATCACACCTATACTCTGTATGAAACAGATTTC
ACCACCTTAGTTAAAGCTGCGATTGGAATCAAAGCTAAGTACTAGGCAGA
AAGCACTGATGATGTGGTGAAAAGAAGAAAACTTGAACAAATAATATCAG
ACCGTTAGGATTGTCATATTTCTTGTTCGATATTTTGTTTAAGACGGTCC
ATAGTCATTTAATTCTAATATCAACATTGATATTTTGTCCGTGATTAGTT
TCATCAGGTTGGTAAGTCACTGAATAAAAAGACTCTTTTTACACAACCAA
GAGATTTATTCCACCGACGTTTCGGAATGGGAATGCATCTCATTATGTAT
AAGCAGCAACACCTGTGCTGCATTGCCATGTGAACCAGTCAGAATTGCCA
TCAAGAAGGTGACAGACGGTCACCGAAACGTCAGTGGAATAAATCTCTTG
GTTGTGTAAAAAGAGTATCTTTATTGATGGATATTTTGTGTTTGCAATAT
TTAAATTCTTCCATATCTACTCAATTTCTGTTTTCCATAACTACAAGTCA
AGTCAATTCAAAATTTATTGCAAACCAATTGTAACAGGTGTAAGGTAAGG
GGAAGTGTAATCTACACTTACATTCTAAACTATACAACATCGATAGCAGA
CACAGTTAGGCGTTGTATGTCTACTGTTCAGCTACATATGTTGATATTCG
CTACTTGCAGTTTATATTTGCATGGAGGTATAAGTGTATTCCACTAGATC
TAAAGAAACATGAAGTTGCCTCACTCGGGAGAACATATGGGTCTAGTCCA
TGGCTGTGAGCTTTTTGATCAGATGCGGAGTAGTAGATTAACATGAGTCT
CTATTCCTGATGAAATAACGTGTGATTATTAACGTTGCACGTACATTGTG
TGTAGTTATGTAGCTGCGGATAAGTGGAACTGCAGGAGTCGATTTCGTTT
CCAACTTTGTTACTTTGAAAGTAGAATTCTAACATTTAACTTGTATTTCT
ATTTTGTACTTTGTAGTTGACCGCACGAAGGTCACTCTACTTGTTGTCGT
GTCAATAAAGCTTCTTCTATACAACATACCATGTCACGGAAGGGAAACAT
ATTGTTTTTACTTTGTTCCTTCCTCTTCCTATTCTTCTCAAAACAAATGA
GGTCAATGACCTTGACCAGACGGC

Coding sequence (CDS) from alignment at Sc0000010:862571..866744+

>transcript:BL97442_cuf0 ID=transcript:BL97442_cuf0|Name=transcript:BL97442_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1011bp|location=Sequence derived from alignment at Sc0000010:862571..866744+ (Branchiostoma lanceolatum)
ATGGACGACGGCAAGCCGTTTAAATTGAGAGAAGCGAAGCATGACGATTA
CGAGGCGGTGATGAAAATGTCGTCTATAGACACCTTCCGTGACGGTTTCG
ACTACCTGCCAGCCAAGTTTCACCAGTATGTGGATGATCCGGACGTTTTC
GTGATTGTAACAGAAAAAAGCGACAGCTTGGTAGCGATCAGCGTTTACAT
GTTTAACGACGATGGTGAAGCTCTACTGGTGAAAACCGCTCGTCAAAACC
CCAATTATAAAGGAATGGGTGCCTCTCGTCGCATGAGACAGGCCACTCCG
ATGCTTTTCAAGGATTTCCTACTCCAGCGATGTACGCCGGCAACTTTGGT
ACAAGGTGTTGTTGAAGCTGGCCGGATGGATGCTCGCAAACTTGTCCTGC
GGCACTTGGGGTTCACTAAGGACAAGGAGAAGTGCAACTTTGATGTAATG
TACTTTCAGTCTGACGTGTCTGCCATCCAGAGTGGTCTCACATCAAGCAA
CACGACCTACCTTCCACCGCTCACTCCCTACCGGCACCCCGACCTCCACC
GCCTGCTGCCGCCCGCCTTCTCAGCTGCCGTCCTGCCTGAAGGCCACGTA
CTTGTTGACTGGGATCCGTACAGTATTTCTGAGGCCAATATGAAGAAGTT
TGTAGAAGCGGGCTGCTACATCCTGGTCGACCCGACCGAACCGGTCGCCA
AGAGTCTTAGTTTCGGTGGAAGTTACATGACTCCTCGAGGCAGGGTGTAT
CACATGGACATACACTGTAAGGACGAGGCTTTATGTAAGGCTCACATCAA
AAACCACGTGAAGATCGCCTGTAGTCAGTATACAGGCATGAAAACCTTCT
GTATCATGGTGATAGACCAAACTTTGAAGGAAACAGTCCTGAAATATTGT
GTAGAAAATCTGACCCTCTGTCACCTGCCCCACGATCACACCTATACTCT
GTATGAAACAGATTTCACCACCTTAGTTAAAGCTGCGATTGGAATCAAAG
CTAAGTACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97442gene:BL97442Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97442_cuf0transcript:BL97442_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97442_cuf0-E1BL97442_cuf0-E1-1564476830-95114Branchiostoma lanceolatumexon
BL97442_cuf0-E2BL97442_cuf0-E2-1564476830-95116Branchiostoma lanceolatumexon
BL97442_cuf0-E3BL97442_cuf0-E3-1564476830-95118Branchiostoma lanceolatumexon
BL97442_cuf0-E4BL97442_cuf0-E4-1564476830-95121Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:862571..866744 +
Properties
Property NameValue
Transcript idBL97442_cuf0
Biotypeprotein_coding