transcript:BL97444_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97444_cuf2
Unique Nametranscript:BL97444_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97444_cuf2

>transcript:BL97444_cuf2-protein ID=transcript:BL97444_cuf2-protein|Name=transcript:BL97444_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=386bp
PDGLIVGGTEAEPGEFPWQAMLWDTRPTRNRFFCSGILINKRWVITAAHC
IRDLYLTKEDFIVRLGKHTTVRGVREANERSYKADKIIVHPDYNEDTLES
DLALLRLAPPEVTFTEYILPICIPDVPEARQRIQRGAIGTVSGWGALFAG
GSASKKLMKVILPVVSLAQCRSSHPQWAHVINQNVFCAGRKRGGKDACKG
DSGGPFAAFYSGRWNLLGVVSWGSEEGCALRGKYGGYTRLHRFRDWIMEH
TEEHTGEQVSFRTRPSNQTAMLGDPVTLRCAAHEQNDISVTWYKGGKTLT
PPSARTIFVLCNNNLLVIANADNADKYTCELRRGNTSISADAWITIQAAI
SACASSPCQHGGQCADNGSSYSCACPKGYTGDNCQI
Run BLAST on NCBI

mRNA from alignment at Sc0000010:5301591..5305213-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97444_cuf2 ID=transcript:BL97444_cuf2|Name=transcript:BL97444_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3623bp|location=Sequence derived from alignment at Sc0000010:5301591..5305213- (Branchiostoma lanceolatum)
TCCGGACGGGCTCATTGTGGGCGGCACAGAGGCAGAACCGGGAGAGTTCC
CATGGCAAGCAATGCTGTGGGACACCAGGCCAACAAGAAACAGGTATTCA
ACATTTGCTTAAGTTGGTTAACATTTGTATTGGAAAATGATGATACTAGA
CACTTTGTTTTTACCTTTCTTATTGATTTACTATTCAGATTTTATTTTCA
GATTTTTCTGTTCAGGAATCCTCATCAACAAGCGTTGGGTGATCACTGCA
GCTCATTGCATCCGGGATCTTTACCTGACCAAAGAGGACTTCATTGTGCG
CCTGGGAAAACACACCACTGTGCGGGGGGTGCGCGAAGCAAACGAGAGGT
ATGCTGGCAAATTGTTTTGGCGACGCCTCCAAAGCGGGGACTTTCTTGTA
GCACTACTATCAAGCTAACTGTATTTGAATGTTCCCTTTTCATGTTCAGG
TAATCGGTTGATTTTGTAGTACAGGTGGTTGCACACGGCAACATGTTCTT
ATTTTGATTTAACCAGCTGTTTATATAATAACTTTATTGCGCAACAATTG
TACAAGGTACAAAGTATGGCATCCAATGGTAGATAGATAACATTCTATTA
GGCTAATCAATCACTCTATCTAATACAATATGGTGTAGTAGAATGGGATG
ACAATGGGACTTTATAATCATTGGAGGAGTTTGTAACTTCTTGACATTCT
TTGATATATTTTCCAATGTATACCATGCAGGGGTTGACGATAGCATTGAG
TATAATGAATTACGTATATCAAAATATTTGGGACATACAATCAAAAAGTG
ATATTCGTCTTCAATTACCTCTGGACAAAATGGACAAAGCCTCTGGTCGA
TAGCTATAGGAAGTTTTTAAAATCTCCCCGTTTCGATTTCTAATTTATGA
CAGCCAATACTGAGTTTTGTATATACTGAGCTGTGATCATCTTGTTTCGT
AGCAGGGGTCATGTTCATAACTTACCTGCCGTAGCATTAAGAGTGGAGTG
TGGCGTGTCATTGCTTTTACAATGCACTTTAGTTGTTTGAATCTTCAATA
CTGAAATGATACCACAGTTGCTTTACCCAGAAATGGCCAAAGCTGTTAGT
AATACCTATATCTATGTTTACTACAGATAACTGCAATGATTATATCGCAT
ACTTCTTGCAGGTCGTACAAAGCCGACAAAATCATCGTCCATCCTGACTA
CAATGAGGACACCTTGGAGTCTGATTTGGCACTTCTCCGACTGGCCCCAC
CGGAAGTGACGTTTACCGAGTACATCCTCCCGATTTGCATTCCGGACGTT
CCCGAGGCACGACAACGGATACAGCGGGGGGCCATCGGCACTGTGTCGGG
GTGGGGCGCCCTATTTGCGGGAGGCAGCGCTTCTAAAAAGCTGATGAAGG
TTATCATAATTTACTACAACTACCAAGGAGACAAACCCGCTAGCCTCCGC
CAGACACCGTGTATTTCCAGATTCACATTGCATACATTTATTCAATAATT
CATTCATTGGTTTGTCAGTTCAGCACGCACAGTCAGGGCCGGCTGCCAAA
CAAGATTGTGGCTATTACAAAGGCCCTGCACACATTCAAATTATCAAGAG
CAACAGTAGCGCCAGTGGAAGAACAGGTCTAACAGAAGCTACTTGAAGCT
CTTCATTGGGACATTTACATTTGTCAATTCAAATACTCATTTATATACAG
CTTACACTTGTTTTCAGAATTATTCTCAAAAATTTCTTTAAGATGTATTT
GATGGATTCTATCTTAAACGTCTCACTCTCCAAAGAATCTATCCAGTTGC
TTGCTTTATTTTGTATTACGTAATGTTGCACCTGGATGTTTAACCTTCAT
CCACGCAAACTTGGTCGCGGTCCTGATTTGCGCCCGAAAATGCTTTTACG
TTCCAGTGATATTTTAGTCTTAGCCAGTTAAACCTGAATCTAAAAGCTTA
TATTTTATATTACAGGTTATTCTGCCGGTGGTGTCCCTCGCACAATGTCG
GTCCTCCCATCCACAGTGGGCGCATGTAATCAATCAGAACGTGTTCTGTG
CCGGCCGGAAGAGAGGTGGGAAGGACGCGTGTAAGGGGGACAGCGGCGGG
CCGTTTGCAGCTTTCTACAGCGGAAGGTCAGAAATACGTGTTAACTGTTC
AAAAAATTGTCTTGCAGCATAATTAATAAGTTTATCATTTTGACATGTTC
CTTGTTCTTTCCGAAGATGGAACCTATTGGGTGTGGTGAGCTGGGGTTCA
GAAGAGGGCTGCGCACTGAGAGGGAAGTACGGCGGGTACACCCGTCTGCA
CAGGTTTCGGGACTGGATCATGGAGCACACCGAGGAACACACGGGGGAAC
AGGGTAGGTCGTGATCCTGGAACACACCGGGGAACAGGGTAGGTCATGAT
TATAGAACACACCGGGGAATGGGGTCAATCATGATCATGGAACACACCGA
GGAACACTTCGGGGAACAAGGTATGTCATGATTATATAACACATTGTAGA
ATAGGTCATGATTATGGTACACATCGAGGAACAGGGTAGTTTATGGTCAT
TGAAAACACCTGGGAATAGGGTACGTCCCTTTTGGAAGACTAATAGTAGC
TCCAATCATGATGCCCTTCTCCAGATTTGAACCGGGGTCTCCCAGTTACC
AACTGATTTCAACCAGGAGCTACAGGGACATCTAGTTAATATGTCTTTCG
CAATTTCATTGTGTACCATTGTGTACCAGGCCTGATTTGAAAATATCATT
CAAAGCATACATGATAACCCCTACTTTTCTCAATGATATCGTTTGGTTCT
TTTATGTGTGGTGGTTTGACGCCATTAGCTAGTTTATAATTATGTCAGAC
TTGTTTCAAAGCATGTCTTGACTTTAATCTACAGTGTCATTCAGAACGAG
GCCATCGAACCAAACCGCCATGTTGGGCGATCCCGTCACCCTCCGCTGCG
CTGCGCATGAGCAGAACGACATCTCTGTCACGTGGTACAAAGGCGGCAAA
ACGTTGACCCCTCCCTCAGCACGGACGATATTCGTCCTCTGCAACAACAA
TCTTCTCGTCATCGCAAATGCAGACAACGCTGATAAGTATACCTGTGAAC
TGAGGAGGGGAAATACAAGCATCTCGGCTGATGCCTGGATAACAATACAA
GCTGGTATGTTCCCATTATTTACTTGTGTTGGGTACACGTATCTATTGTC
AAGTCATGGAAAGTGTATTACAATCACAGGAACGGGTTGGTCATGATCAT
AAAACACATTGTAGAATAGGGTAGGTCATGTTCATGGAACACATCGGGAA
ATAGGGTAGGTCATGACCATGAAATCAAAGCGGTTTCATAATACTAGTAC
CTTGATTAAAAACACACCCATTAACAAGGTACTTTTGATCTGTCAAATGT
TATTGATTGATTGATTGATTGATTGATTAATTGAAACTAGTTTTTGACAG
CATTTTAATACTTTATGCAGATTTAGATATTGTTCCTGCAACTTTGCCGT
CCTTATAGCAATCAGCGCATGCGCCAGCAGTCCCTGTCAGCACGGTGGGC
AGTGTGCGGACAATGGCAGCAGCTACTCCTGCGCATGTCCAAAGGGGTAC
ACCGGAGACAACTGTCAGATAGG

Coding sequence (CDS) from alignment at Sc0000010:5301591..5305213-

>transcript:BL97444_cuf2 ID=transcript:BL97444_cuf2|Name=transcript:BL97444_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1158bp|location=Sequence derived from alignment at Sc0000010:5301591..5305213- (Branchiostoma lanceolatum)
CCGGACGGGCTCATTGTGGGCGGCACAGAGGCAGAACCGGGAGAGTTCCC
ATGGCAAGCAATGCTGTGGGACACCAGGCCAACAAGAAACAGATTTTTCT
GTTCAGGAATCCTCATCAACAAGCGTTGGGTGATCACTGCAGCTCATTGC
ATCCGGGATCTTTACCTGACCAAAGAGGACTTCATTGTGCGCCTGGGAAA
ACACACCACTGTGCGGGGGGTGCGCGAAGCAAACGAGAGGTCGTACAAAG
CCGACAAAATCATCGTCCATCCTGACTACAATGAGGACACCTTGGAGTCT
GATTTGGCACTTCTCCGACTGGCCCCACCGGAAGTGACGTTTACCGAGTA
CATCCTCCCGATTTGCATTCCGGACGTTCCCGAGGCACGACAACGGATAC
AGCGGGGGGCCATCGGCACTGTGTCGGGGTGGGGCGCCCTATTTGCGGGA
GGCAGCGCTTCTAAAAAGCTGATGAAGGTTATTCTGCCGGTGGTGTCCCT
CGCACAATGTCGGTCCTCCCATCCACAGTGGGCGCATGTAATCAATCAGA
ACGTGTTCTGTGCCGGCCGGAAGAGAGGTGGGAAGGACGCGTGTAAGGGG
GACAGCGGCGGGCCGTTTGCAGCTTTCTACAGCGGAAGATGGAACCTATT
GGGTGTGGTGAGCTGGGGTTCAGAAGAGGGCTGCGCACTGAGAGGGAAGT
ACGGCGGGTACACCCGTCTGCACAGGTTTCGGGACTGGATCATGGAGCAC
ACCGAGGAACACACGGGGGAACAGGTGTCATTCAGAACGAGGCCATCGAA
CCAAACCGCCATGTTGGGCGATCCCGTCACCCTCCGCTGCGCTGCGCATG
AGCAGAACGACATCTCTGTCACGTGGTACAAAGGCGGCAAAACGTTGACC
CCTCCCTCAGCACGGACGATATTCGTCCTCTGCAACAACAATCTTCTCGT
CATCGCAAATGCAGACAACGCTGATAAGTATACCTGTGAACTGAGGAGGG
GAAATACAAGCATCTCGGCTGATGCCTGGATAACAATACAAGCTGCAATC
AGCGCATGCGCCAGCAGTCCCTGTCAGCACGGTGGGCAGTGTGCGGACAA
TGGCAGCAGCTACTCCTGCGCATGTCCAAAGGGGTACACCGGAGACAACT
GTCAGATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97444gene:BL97444Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97444_cuf2transcript:BL97444_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97444_cuf2-E1BL97444_cuf2-E1-1564476830-100016Branchiostoma lanceolatumexon
BL97444_cuf2-E2BL97444_cuf2-E2-1564476830-100013Branchiostoma lanceolatumexon
BL97444_cuf2-E3BL97444_cuf2-E3-1564476830-100011Branchiostoma lanceolatumexon
BL97444_cuf2-E4BL97444_cuf2-E4-1564476830-100009Branchiostoma lanceolatumexon
BL97444_cuf2-E5BL97444_cuf2-E5-1564476830-100007Branchiostoma lanceolatumexon
BL97444_cuf2-E6BL97444_cuf2-E6-1564476830-100005Branchiostoma lanceolatumexon
BL97444_cuf2-E7BL97444_cuf2-E7-1564476830-100003Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:5301591..5305213 -
Properties
Property NameValue
Transcript idBL97444_cuf2
Biotypeprotein_coding