transcript:BL97467_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97467_cuf8
Unique Nametranscript:BL97467_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97467_cuf8

>transcript:BL97467_cuf8-protein ID=transcript:BL97467_cuf8-protein|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=258bp
LTSTNQPTKPTMTPFLLLFVALATASPMKRQTPPLDADGDGHLTIIEVDN
AMDLDVVLVALDTDMDQQFTVQQALQFLDHHYINVLDTNHDHMLSFQEIQ
AGLTLADLFAFYDSNGDGFLYGTEADRLYAMYDAAYGPAPVRVSRQAVDG
LDTNNDAHLTLSECEAGLNLSVVAVVLDTDGDMMFTVDEALQFIDHHYFN
VLDTNHDHMLSFQELRDGVTWADLFSFYDRNDDGFLYGAEADKVYFMYNE
VQNAAIPN
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1829877..1833734-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97467_cuf8 ID=transcript:BL97467_cuf8|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=3858bp|location=Sequence derived from alignment at Sc0000011:1829877..1833734- (Branchiostoma lanceolatum)
CCTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCCTTCCTCC
TCCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGGTATGTACTG
AACGCCCTTCAGATTTTAGAACCATCTACATCTGTAGAAATCTAGAATTT
GCAATAATCGTTAGCAAAGCTTAGAATTGTCGTACTTGTTGTGCGATTTA
TCTTCAACGTATATCGTATGTATCTTGCCGCTGTCTTTATTGATATCAAA
TATATCTTGCTGTTTAGCAACTGTACACTTTGTATTTAGAACCACGATTG
ATATCCAAATTCCATTATTTACTTTATTTATTTACTTATTTTGTTACTAT
TCTGCTTTCTTTAAATTAAGTCATTAGTTTGTTACACTACTTTTCTATGT
AACTTTTATTATTATTGTACTTAAGTTTGTAAATGTGCCTTTGTATTATA
TTTTGTTATTTCAGTTATTTTTTGTTTATGTATGCACGCAGGGCGCTTTG
AAAATCGCCGTAGTGGCGACAAGTTTGTCCCTGGATAAATAAATAAATGA
AATGAAATATGGAACTAAACTGAAATAATCTCAGTTGGTCAGCTGTGCTG
GTGGGTAGAATGTTCTCTTTGCATTCGGCAGAACGCGGATTCAGTACTAT
TTTTCAATATGGGTCCGGCGACACGTTGACATTCAAGTTGAAATATTTTA
CCCTCCCTTTATTAACACAACGACTTACATTGTTCTGTCTCGACCGACTA
TGACCTGATTAAGCAGAATCATGCAAAAAGTTAGAAATTTTCTGTATGTT
CTGAACGCAGACAGACCCCTCCACTGGACGCTGATGGCGACGGACATCTC
ACCATTATTGAAGTGGACAACGCTATGGACCTGGATGTGGTCCTGGTGGC
CTTGGACACCGACAGTACGTACCGATGCTATATCTCATGTCGCCTTTTCA
CACGAGTTTACACTTTTTCAGACAGGAGGCGTACGTCACATCCTTCGACC
ATGTTGTCACATCCGCCGGCCATGTGACGTCATATCCGTCCGTCATGTGT
AAAAGTGTAAATCCTTTCACAAACTCAAGCAGACGTTAAAAATCAATCGC
TTCTCTCTCTCTGTGGGAAAGTTTATCGAATAGAAAATTCGTTTAAAATA
TACCAAATTTACTTTGCAATCATCAATCATCCAAAATAGCGGACGGTACT
TGACAATACGCCATAGTAACGTGAGTTCAAACCTCCTCGTTTCGAAACGC
TTCTTCTTTCTTCAGAAAATAATTTCACCAGGTTGGTAGAGAATACGATA
TTGAAGCATTTTTTACACCTGCTGATATTTCGGTGTCTCTCAGACACCTT
CCTCGGAGCTTCTAACTGCAGAGCTGCTTCTCGCTGCTGCTTACAAACGT
AACCAGAGGAGAGACACATCTGGTTGTCTATAAAAAGAGAACTCAAATAT
CCTCTTCTTCTTCTGTAGTGGACCAGCAGTTCACCGTTCAACAGGCTCTG
CAGTTCCTTGACCACCACTACATCAACGTCCTCGACACCAACCACGACCA
CATGCTGAGCTTCCAGGAAATCCAGGCAGGCCTCACCTTGGCCGACCTGT
TTGCCTTTTACGATAGCAACGGTACGTTCGGACGTTAACTTTACCTATAC
AAGCCCTGCAATAGATGAAGTCAAATTCATAAATACGAAATGTGATGTTA
CGTGTCTAGAGAGAAATTGTGAAGTACGAAAATCATTTTGAGAACTGCAC
ATCTCCCTTAGCCTGATTTCATCTCAGGATGTAGACGTCGCAAAGGTGTT
TTTTTCACTTCACACTTGTTTCGTTCTATGATATCAATGGTACGTTCCGA
CATAAACATGCGACATACCTTTCACCCTATCTCGGCAATAGATGAATACA
AGTGCACAAAAACTGACTACGTCACAGTGAAGACGTACGTCATTTCTGTG
AACATTCAAATGGGTTCTAACATCACATTTTCATTCTAATGCTTCGAACG
TACTGGTATGTTTAACAAGCTCGATGGTGCTAAAATGTTGACGAAAATGA
CGTGCATCCCACTACGTAATTACCATTTGTCTTTTATAGTTATTGGGTGG
GCCAACTACTCTCTCGTCGCAGCTAGGGGAGCCTTTTTTGAGTATTAAGC
GACTTATTAACTTTAATTATCTCCGTTCCTGAAGTTATCGTGAGACGCAC
ACGTCGCCAAGGTTAATTTTTTAACATTAACTTGTTTACCCTTTTTTAAA
TCCCTTCAGGTGACGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTAC
GCCATGTACGACGCGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCA
GGCTGTCGACGGTCTTGACACCAACAACGACGCGCATCTCACCCTGAGCG
AGTGTGAGGCCGGACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACC
GACGGTACGTACAAAACTCTACATCTCCTCCAGTCCTCTCTGTCCTCCAG
TGCTCTTGGAAGATCTTATGGTGTGCATCCTGCATCCTCACACAGCTGCT
GTATGCAGGACGTGTGAGGTCTGCCTACACTTTGTCCATGTTTCGGTGCC
CACAGGAGGACGTCCCTGACGATCTCCCTCTTACTCCTCCAGGAATGACC
AGCAAAACGTAGCCTCCTCTCACGGATGACTTGAGATATGGGGGGTAAAT
CCCCATATAGCAGGTCCTTTGCGGGATGCTCCTTCCAGGACATGTTTAGG
GCAGCACGTAGCAGCTTTGTGTAGCTGCCATCTGGTTTTCTCTCAAGTCA
TCTCAAGTTGAAATTTTAAAAGAGTTTACACGTTTATGAAGGTTAGACAT
CCTGGTATCCAATATATAAAGACAGTTCAACTGGATGAAATTCAGATAAA
GAGTTTACGCAAATGTGTTGCCCGCCATGTGACGTCACATCCGTTCATTA
TGTTACGTCACATCCGTTCATTATGTGACGTCACATGCAAAAGCTTGTTG
GTAAGAGCTTTACTTTACGCACAGATAAAGCGAGTTAACAATAGAACCTT
CTTTTCTGTGTAGGTGACATGATGTTCACCGTTGACGAGGCGCTGCAGTT
CATCGACCATCACTACTTCAACGTCCTCGACACCAACCACGACCACATGC
TCAGCTTCCAGGAACTTAGAGACGGTGTGACCTGGGCTGACCTGTTTTCC
TTCTACGACAGAAACGGTACGTTCTGACGTCACTATACCTACAACATCCA
GACATGAGACGTGTCTAAAACCCTCAAAACTGATTACGTCACTGTAAGAA
CGTACGCCATTTTCGTTGACATGCGTTCTAAAATGTTTTTCTCGACCAGC
ACCGCATTCGAACGCGCGTCGAACATGTACATGTAATAGCATGTTCGAAC
GCGTTCGACTGTTGACAGAAATGACGTATACATTTTTTTTGCACATCTTT
AATCTATGTATAGAGTATGCCAATGAAATACAAGCTTTCTTCATCAATTC
CGAATTCATGACAATTTTTTAAACTTTCTAAAGAACTTTTCCATTGTTTC
CCCTTGTATCCATGGAGCCTGGTTGGACACACATCGCCATGGCATTTTTT
TTAAGCCACTCTTGTTATCTTCTAATGCATCAGATGACGGCTTCCTGTAC
GGTGCAGAGGCGGACAAGGTCTACTTCATGTACAACGAGGTACAAAACGC
CGCCATCCCGAACTGAGTGGGGGAATGTCGGCTGTTCTAATTACTAGCAA
CAAATCAGCACTAAATGACAACTTGCAGACCTACAAACTACCCGAGTCCC
TCCTCACGACCTAGTCGTTGGTGAGGACAAGGTAAACCGTGACTTGGTCA
GACTTGCG

Coding sequence (CDS) from alignment at Sc0000011:1829877..1833734-

>transcript:BL97467_cuf8 ID=transcript:BL97467_cuf8|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=777bp|location=Sequence derived from alignment at Sc0000011:1829877..1833734- (Branchiostoma lanceolatum)
CTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCCTTCCTCCT
CCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGACAGACCCCTC
CACTGGACGCTGATGGCGACGGACATCTCACCATTATTGAAGTGGACAAC
GCTATGGACCTGGATGTGGTCCTGGTGGCCTTGGACACCGACATGGACCA
GCAGTTCACCGTTCAACAGGCTCTGCAGTTCCTTGACCACCACTACATCA
ACGTCCTCGACACCAACCACGACCACATGCTGAGCTTCCAGGAAATCCAG
GCAGGCCTCACCTTGGCCGACCTGTTTGCCTTTTACGATAGCAACGGTGA
CGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTACGCCATGTACGACG
CGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCAGGCTGTCGACGGT
CTTGACACCAACAACGACGCGCATCTCACCCTGAGCGAGTGTGAGGCCGG
ACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACCGACGGTGACATGA
TGTTCACCGTTGACGAGGCGCTGCAGTTCATCGACCATCACTACTTCAAC
GTCCTCGACACCAACCACGACCACATGCTCAGCTTCCAGGAACTTAGAGA
CGGTGTGACCTGGGCTGACCTGTTTTCCTTCTACGACAGAAACGATGACG
GCTTCCTGTACGGTGCAGAGGCGGACAAGGTCTACTTCATGTACAACGAG
GTACAAAACGCCGCCATCCCGAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97467gene:BL97467Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97467_cuf8transcript:BL97467_cuf8-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97467_cuf8-E1BL97467_cuf8-E1-1564476830-102706Branchiostoma lanceolatumexon
BL97467_cuf8-E2BL97467_cuf8-E2-1564476830-102703Branchiostoma lanceolatumexon
BL97467_cuf8-E3BL97467_cuf8-E3-1564476830-102701Branchiostoma lanceolatumexon
BL97467_cuf8-E4BL97467_cuf8-E4-1564476830-102699Branchiostoma lanceolatumexon
BL97467_cuf8-E5BL97467_cuf8-E5-1564476830-102697Branchiostoma lanceolatumexon
BL97467_cuf8-E6BL97467_cuf8-E6-1564476830-102695Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1829877..1833734 -
Properties
Property NameValue
Transcript idBL97467_cuf8
Biotypeprotein_coding