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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97479_cuf1 >transcript:BL97479_cuf1-protein ID=transcript:BL97479_cuf1-protein|Name=transcript:BL97479_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=319bp
MADNYYTRSYVSDEHSDSLLRGLNALRSDSLLCDVTLVADDQGFQAHRAV
PASCRDYFKAMFTSGMRESSETHVELKGVSANGLQHVLNFAYTSRLGLSL
QIVQDVIGAASHLQVLPIIVIVEQFLAAEINVDNCIAIGQIAANYDLRSV
ANQVNQFMLMHFKQVSQIDDFLSLPHERIAELLGSDWLLGCTEVEIFHIA
LRWLRHEPARMAHASQVMENVRFPLMSPGDLVDQVQSVDIMDSDSTCRKF
LLEAFNYQTLPYRQHELQSARTGVRSILRAVVCIGGTPYTDDRVVKDKVH
GQLMMRWFEIGTMDEGRCH Run BLAST on NCBI mRNA from alignment at Sc0000011:1506643..1514195+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97479_cuf1 ID=transcript:BL97479_cuf1|Name=transcript:BL97479_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7553bp|location=Sequence derived from alignment at Sc0000011:1506643..1514195+ (Branchiostoma lanceolatum)
ATTCATTCAAAAAGCAACATTTCACAGTCCCACCGCGCCTCCTATGTATC
ACGTGACTGTGACGTCAGCTGTTGACCTTTACCCTGTGGGTGTAGCGGTG
CAGGATATGGCCATGGCCAGGTGAGGCACAGTCAGTCCGACGTTACCGGT
GTACAAAAACACCTTTTCTCAACAGGTAATGTTTGGCCCGGCGTTTTCTG
AGTAGCCACGGCCCAAGACAGGACCGCCGAATGTGAAGGAACCTTCTAAG
GCGTCTTCTAAAGCCGTCTTCGCTCGACACAGGGTCTTCCATTTTTCCAA
AACAAAGGTGAGTTCTCTCCAGGTGTCTGATATATTTGGGTTCGATGGGT
GTGATTCACCGTGACCTGTCAGTTTCTCATCGAATTTGTTGGTGATTTCA
AGGTCGGAAAATTGTAGACAACAGTTGAGAAAATCGGTCACACAGCACAA
AGAAGTAGACTGCACTGCGTTCGTTCCTTGGTTCGTTCGATCGAGATTTG
TGCACCGAATACATAAAATATCATAGATTTATGAACTTAACGTTACCTTT
GTCTGTCTCTGTTGACGCACACATCCATACCCTAAAGGTATTTTGTTGTG
TTTCCTACTTGTCATCTAGGACAAGTTACAGTAAATGGATTTATCACGAA
TTGTGCAAAAACGTGCGTTTCTATGATATGGTAAATGTTATGTTCTAAAT
GCCCCCCTCCCCAACGCAGGTGAGTTGTTGTAGACATATTGTTACACATA
TACATATGGTAATGTTCAGGTACAGGTACAGGTACACAGGAAAGCTAGCT
GATGAATACAGGCAGTACAGACTGTGCTTGTCTGTGTGTGTGCATGTGCA
TGTGCATGTGTCTGTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGTGTGTGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTATCTATGCTGTGTGTGTGTATGTGTACCTGCCTG
CCAGTGTATGCTGTGTCAGTGTGTGTCTCTGCGTGAGTCTCTGAGTGTGT
GTGTGTCCGAGCGTTTGTGTGTGTGTGTTTGTGTGTATGTGTGTTTGTAT
TGGGGGGGGTGTGTGTGTGTGTGAGGGGTTAAAGTCTACCATCTTATTCT
TCAGTGATATCCGCAGCAATGAAAGTGTTGCAATATGTGTGAGGGGGTGA
AGTCTGCAGCTGCCATGTCTGATCAGCCTTTTTTTTACAGTGCGTGAGTG
ATATCCGCAGCGATGGCGGACAACTACTACACGAGATCGTACGTGTCTGA
CGAGCACAGCGACAGCCTCCTGCGGGGACTGAACGCCCTCCGCTCCGACA
GCCTACTGTGCGACGTCACACTCGTCGCCGACGATCAAGGCTTCCAGGTG
ATCTTTACCAGCATTCTTTTTACTTAGAATTTATTATTACTTTAGGGCTC
AAAATTCGTTTTCAAGAACAGGTGCACTGGTGCACCCAACCAAAAAAATT
AGGTGCACAGAAAGAATTTTGGGTGCACCACATAAGATAAAGCTGAATGT
CATAAAAACACATTTAAGTTTAACCCTTTTAATCTGTAATAATAATAACT
AACTTCAACATTTCAAACAAGTAATGCATCAAAGTACAACAAAGGTAATA
TTACTTTTTCAGATGCTTCAGTTTCAAGACTGTATTGTGTACCAGTGTTA
CCTCTACCCTGTAGCCTACAAAAATATCTAGGTGCACCCAAAGTCAAAAG
TTAGGTGCACAGCTCAAATTTTGGGTGCACACAGACTAGGTGCACATGCA
CCCACTATTTCGAGCCCTGTACTGTAAATCACTTAAATATAGCGGTGGGA
AAATATAGCGGTTGGGAGAAAATGGAGTAGGTCACTGCACTTAATCTTAA
CAATGGGAACAAACATTACTGTCTCAAATGTTAGTGATCAAATATTAGCG
ATGATGAAATTTTAGCTGTTGACTAGTGACTGTTCAATCAGCTAAAATTG
ATTTACAGTTAACAAATCAAGAATTACAGTAGACAGACAAGACAGAAAAG
ATGGCTTTTTTTAATTAGCAAATGGTAGACAATATATGCATTATTGATGG
TGCCTGAAATTCCTTGCTAATTTAGTAGTTTACATTAAGTCAGTGTGGTG
GGTTCTTTAATGTGCTTGAGGTGTAACTCTCCATCCCATCTGATGAGGGG
ACATCCAAAGCATTTTCATTTGAGTCAAGTGAGGAAATAACATTGGGTCC
TGCCAGGGCTTTGAACCTAAAGCCTTTAAAACGGAAGTCAGCAACCCTTT
GATACCATAAGACCACCTTGCCACTTATGTTATGTTGCTAGCTGACACAT
GATTGTCTGTTACAGGCTCACCTCGTGAGCTGCATATTTGTACTGAACAG
TACAAGCTGCATTTTTTTTTCTATGCATAGCCCCAGTTCTCAGCTTAGCA
GCTGAGCTGTCAGTTATTACTTGACAGGACGCTGTCGAACAGCACTGAGG
GGGGCGTTATTGGGTTGACCGACTACTACCCGACGGGGCTATTTAATTGA
TCCACAATTAAAAGACAGATTTAATTGATCTCACACTGGGAATGTTCCCT
ATGCCTATCAATAAGTCTGGTGGGTTCTTAAACATGCTCAAGGGTGGTCC
CTATCCCATCCGAGAGGACTGTTGTCCCTAGCCGAAACATTTTTCGGCCG
AGTCATGATCAAGTTAAGAAGTTCTGTTAGGTTTTAAGTCCCTTTCCCAA
GGTCACAACATTTGTGTCTACTACGGATTCGAACCCAAAACATTTAGATT
TTAAGTCTAAATACCACAGGCACCATGCCACTTTCTAACCTCCACATAAT
CATCTGTTACAGGCTCACCGTGCCGTGCCGGCCTCCTGTAGGGACTACTT
CAAGGCCATGTTTACAGCCATGTTATGAATAACATCAGTAACATTGCTGT
AACTGTTACAATAACATCGCTGTATTGCTCATTACAGGCTCACTTAACAT
CAGTAAAAATGTTACTTACACTTTTTTTACAGGCTCACCGTGCCGTGCTT
GCCTCCTGCAGCGACTACTTCAAGGCCATGTTCACCAGCGGGATGCGCGA
GTCCAGCGAGACGCACGTCGAACTCAAGGGCGTGTCGGCCAACGGGCTGC
AGCACGTCCTTAACTTCGCGTACACGTCGCGCCTCGGTCTCAGTCTACAG
ATCGTGCAGGACGTTATCGGTGCTGCCAGCCACCTGCAGGTCAGTCAGTC
AATCAATTTATTGATCGATTAATTGATTAATCAATCTGTCAATTGATCAG
TTAGTTGGTCAGTCAGACAGTCAGTCAGTCACTTAGTCACTCAGTAACTC
AGACAGTTAGTCAAGTCAGTCAGTGTCAGTCAGTTAGTCAGTGTCAGTCA
GTCAGTCAGTCAGTGTCAGTCAGACAGTCAGTTAGTCAAGTCAGTGTCAG
TCAGACAGTCAGTCAGTCAGTTAGTCAGTGTCAGTCAGACCGTCAGTCAG
TAAGTCAAGTCAGTCAGTGTCAGTCAGTCAGTTGGTCCACCTCCTTGGTT
AGTCAGTGTCAGTCAGACAGTCAGTCACATAGTCAGTCAGTAATCAATCA
GACAGTCTGTCAGTCAGTCAGTTAGTCACTGTATACTTACATATTATTTT
ACTTTTGAGACTGCGTCCATTGGCAGCGACACTCAAAGCTTCACTGAAAA
AAGACCACACTCAGAATCGCCCTGTGGAAGGTGACAGACGGTTACCAAAG
CGTCAGTTAAATAAAACAGTTTTGGTTCTGTACAAAGAGTCTTTTTATTC
AGTGACTTACCAACCTGATGAAACTATTCACGGAGTAGCAACAAGAGCTT
TTAAAAAAAGCTGGCGTTTCGGCTACGTTTATAAGTGTGAATTGTCTTTT
CCCTTTACTTGAAGTAAAATCTGCCAGAGGAAGTCACTCAAGGGCTGTTC
AGTCTATAAGAAAAATTGTCATTTTGGGAAATGAGTACTGTTTTAATAGA
GAAAGGCAGATTGGGGAAAGCAATTTTGAAGTTACGTCACTTAACTTAAG
TGCTTTTGAAAAAGCTGGTCTTGGCCTACAACTTGTACTTATTTGTAAAA
TGTATAATAGGCTCATTATAAAAGCTATCAATGTAATTATGTACATGGCA
CGCAATAAAACATAAAATTTGAAAAAGCACCATTGAATCATCAGCACTAT
GGTAATTAAGTGAAATAGAAGTTCATAACAGCTAAGGTTCTATCTAAAAT
GACTACCAAATGTCAAACAAATCAACAGCTACCTCATCCGTATTATTCTG
GTTTCCGCATTTACAACATTTCTTCCTTATTTTCCTGGGTAATTTTGCTA
AAATTCATGAAAATTCCCATAGTTTTGTGCCGAGGGGCGCCACTTTCCAC
GTCCGTGTTGTCTGAATGAAGTCGATACTGAACAATGGAGCATTTGCTAC
TGTAACAAAGAATCGCTGTTTTGCAAACAACATCAAGAGCCTCTGTTTAC
ATCGGGGATAGAAGTTTAGTGGCGAGTGTTTTGCAAGAATCATCTTACCG
CGCATAGGAGCCGCTGCACGGTATTTTCCATTACAATGAACAGAAAAATT
CGAATGCCGGGTTTGGAATCTATGAAGTCCTGTTCATAAGACAAAGGCCT
TGTATATATTAAATGAATATTTAAAAATAACAAATATAAAATATTTCTTT
ATTTATTAATGAAAAAAAATGATATTCATAAATATGATATTGATAGATTA
ATATAATATCAATATATATTTTTGATATTCAATATCTAAAAAGAAAAAAA
AATCCATGCACGGAGACGAACCCGGATCTTCTGGGTCCGAAGTGCTTCGC
GTTGCCAGATCGGCCAAGCTGCGGTACGTAACTATTCACTCTGGACGTAC
TGCTATAACCTCACTATATGCTATCATTTATGCCGATTTTTGGTCGTTTT
CTTGACGAAATCATTTTTTTTCTTCTGCAATCTTGTGGAATAGATGTAAT
ATGGTCATTTTTCAGGATATCAAAGTCCGAAACCACAATGCAATGATATT
TCCGAACAGTTGTAGCAGTTACATGCGGTCGCCGTCCTGTGTCACATGCA
AATCTAGCCTGCCTGCCTTTTCGTGCTCTCTTGCCATATAAGGCAACGGC
TATACAAGGATTTGAGAACGTATTGCCATATAAGGTCTTATTGTGTGCGA
CACAGTGTTGAACCAAGCTTCCCTGGTTCCTTCCTTGAAGGTACAAGCCA
GGACAATGCGTTCCGGCGCGCATGCGCCGAAACGCAAAAAAGATGAACAA
AAGACCCCCTGACGCCCTGTTAGCTAAAAGCCTGCATCTCTCCATCCTCA
GGTCCTGCCGATCATCGTCATCGTCGAGCAGTTTCTCGCGGCGGAGATCA
ACGTGGACAACTGCATCGCTATTGGTCAGATCGCCGCAAACTACGACCTA
CGCTCCGTAGCCAACCAAGTCAACCAGTTCATGCTGATGCACTTCAAGCA
GGTGCTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGCTATTTATATAAT
TGTATTTGTTGGTTCTCGAAACAAATAAGGTTGAAATGACCTGGATCAGA
CGGATGTCACTATAATGTTTACCGGTTATGTACCACAAACCCTGTGGTGT
TCAATTACATAATGTAGCAAGTGGCAGGATAGCTGGAGATCACTTTCTCT
TTTCTTCCCTTGTCAGGTTTCACAGATTGATGACTTTCTCAGCCTGCCTC
ACGAGCGGATCGCGGAGTTGCTGGGCAGCGATTGGCTGCTGGGATGCACC
GAGGTCGAGATCTTCCACATCGCCCTGCGGTGGCTCCGGCACGAACCGGC
GCGCATGGCGCACGCCAGTCAGGTCATGGAGAACGTCCGTTTTCCTCTGA
TGAGTCCAGGCGATCTGGTCGACCAGGTATCATCATCATCATCAAATGGT
TTTTATTGTCAACAAAAACAAGGCTCTTGCAGCCAGAGGCTGAATTGCGC
CTTGTGTCAAAAACTGTATCACTGCATAAAAAACAAGTACAAATCCCAAT
CACACTACAGTATTCTTATCATTCTGCTTATTTTTCATCAGCTATCTTGG
CAAGAAAAGACCAATCCTCATATCATATCCTTATATCAATCTTTACATGG
TTTGATGTTCACAGTTTTCACAGTGCCTTCTTCACCACAAACTTAAAACC
ATACGAAAATACATGTATTTCTTCTCGCCTACCCTTACCCCAGGTTCAGT
CTGTGGACATCATGGACAGCGATTCCACCTGCCGAAAATTTCTCCTGGAG
GCTTTCAACTACCAGACGCTCCCGTACCGCCAACACGAGCTTCAGTCGGC
GCGAACCGGCGTGCGATCGATCCTGCGGGCTGTCGTTTGCATCGGCGGAA
CTCCATACACCGACGACCGCGTGGTAAAGGACAAGGTGCACGGCCAACTG
ATGATGGTAGGTCCAGTATTCGTAACTTTTTACCTTCGCCTAGACATGTC
CCCGTGGCGCAAGCGGTAACGCAACCCCACTGCTTCGCCATCTGGATTAA
ATTCCGTGGATCCTAGGGCCCGAGTTCGATCCTAGGGGTCGACTCCAGCT
CGGACATGTTGTAAGGGATTGCATTCGTCATTTCGGATGGAGACGTAAAG
CCGGCGGCCCCGTGTATGAGGGAGCTTTGGGCGTAAGCCTCAAGCGTCAA
ACCTCTGCACGTAAAAGAACCCAACACACTTATCGAGAAGAGTAGGGGTG
ACCCGGTGTGCTTGGCTAAAAACGCAGCCGTGGCGAAGCCGATTGCACTA
CCACTAGCTACTTGAAAAAGCATCATGCTTCACCTCAATTGAGGATGCCT
GCTTTACCTTAGAAGGTTATGTTTTCGTCAGCATTCGTGTGGGTGCCCAT
CCTTCCTTTCTTCTATGTACTCGATAACTCAAGAATGCCTGGATGGATTG
TCTTGATACCACGGTATGTGGGTAGGGCTTCTTGAGACGGCTTGCTATGG
TACTGTAGCGGAACTTCCAGTTTTGATATTTCATGTTCAGGACATGCAAT
TTTTTATATGGTGTTTACTACTTTCTGTTTTGTATATGTATATCTCGCTA
GTCACCAATGTGTAAATTATGCAGAAACATTATTTCCTCAGTGGCTTTGT
GTTGGCGTCACTGGGAGAAAGGCACTTTACATAACTTTTCTCACATCAGC
CGAGTCTGAAAATGGGTACATGACTTGGGTTGGAGTTAAGAGGCGGTGGA
AGGAGAGGAATGGGCTCCGCCTTCCAATACCGTGCCCTAGACACACTAGT
GGATAGCAACCCACTGCCCATACTGCCTCAAAAAGGCTATGGGACTACCT
TTGCTTTTACCTTCATACCAAATAATATAGACACATACATGTATTTCTCC
TTGTGGTCCAGAGATGGTTTGAGATCGGCACGATGGACGAGGGAAGATGT
CAC Coding sequence (CDS) from alignment at Sc0000011:1506643..1514195+ >transcript:BL97479_cuf1 ID=transcript:BL97479_cuf1|Name=transcript:BL97479_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=957bp|location=Sequence derived from alignment at Sc0000011:1506643..1514195+ (Branchiostoma lanceolatum)
ATGGCGGACAACTACTACACGAGATCGTACGTGTCTGACGAGCACAGCGA
CAGCCTCCTGCGGGGACTGAACGCCCTCCGCTCCGACAGCCTACTGTGCG
ACGTCACACTCGTCGCCGACGATCAAGGCTTCCAGGCTCACCGTGCCGTG
CCGGCCTCCTGTAGGGACTACTTCAAGGCCATGTTCACCAGCGGGATGCG
CGAGTCCAGCGAGACGCACGTCGAACTCAAGGGCGTGTCGGCCAACGGGC
TGCAGCACGTCCTTAACTTCGCGTACACGTCGCGCCTCGGTCTCAGTCTA
CAGATCGTGCAGGACGTTATCGGTGCTGCCAGCCACCTGCAGGTCCTGCC
GATCATCGTCATCGTCGAGCAGTTTCTCGCGGCGGAGATCAACGTGGACA
ACTGCATCGCTATTGGTCAGATCGCCGCAAACTACGACCTACGCTCCGTA
GCCAACCAAGTCAACCAGTTCATGCTGATGCACTTCAAGCAGGTTTCACA
GATTGATGACTTTCTCAGCCTGCCTCACGAGCGGATCGCGGAGTTGCTGG
GCAGCGATTGGCTGCTGGGATGCACCGAGGTCGAGATCTTCCACATCGCC
CTGCGGTGGCTCCGGCACGAACCGGCGCGCATGGCGCACGCCAGTCAGGT
CATGGAGAACGTCCGTTTTCCTCTGATGAGTCCAGGCGATCTGGTCGACC
AGGTTCAGTCTGTGGACATCATGGACAGCGATTCCACCTGCCGAAAATTT
CTCCTGGAGGCTTTCAACTACCAGACGCTCCCGTACCGCCAACACGAGCT
TCAGTCGGCGCGAACCGGCGTGCGATCGATCCTGCGGGCTGTCGTTTGCA
TCGGCGGAACTCCATACACCGACGACCGCGTGGTAAAGGACAAGGTGCAC
GGCCAACTGATGATGAGATGGTTTGAGATCGGCACGATGGACGAGGGAAG
ATGTCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000011 | genome | Sc0000011:1506643..1514195 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97479_cuf1 |
| Biotype | protein_coding |
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