XLOC_002621 (gene) - C. hemisphaerica

Overview
NameXLOC_002621
Unique NameXLOC_002621
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000047:735422..741998+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002621 ID=XLOC_002621|Name=XLOC_002621|organism=Clytia hemisphaerica|type=gene|length=6577bp|location=Sequence derived from alignment at sc0000047:735422..741998+ (Clytia hemisphaerica)
gaaaacttaaGATGGTAGCAAAAGCTATGGTAGTGGGAAGGTaaaatttt
cagtaaaatctGCATCCTCTTTTCTCTTTAAAGATATCTTtagataaaag
aaataaaagaagtttttttgaatttgactgAAGCATCTTAAATATCAAGT
CATGGGATTGTTTGGAAAAACACCGAAAAAGGACCCAAAAGAACAGGTAT
ATTTATTTAttgtactttttttttattatttattataccTTTATTTAGCT
ATATGTTTAGTTTCAGGCGACCAAGGGAAAGGATCAGCTGACAGGAGGTC
AGTAATTTGAAAAAGGCGAGTCTGTATTGTAGACAACTTTAACCTGAACC
AGACCTGAACCCTGACCCTGAAACCTGTGACCTGGACGACCTGCGTTTCG
TACTAGTCGCTTTTGGTCCAAAATTGTAGCCTTTGCCTTGCTTGTCCGGG
GTGAACAGCTTCGAAAAATCCATGTGTTTCCATTTCAAGAAATCATGCTc
aaatgcattaatttttctcatcattcttttgatagaccttttttcaaaga
ggacgtcctgccATTGGCCAGTCAGGGACAGTCGCCTTAGGCaggcgatg
ggaatttgatgttctgtttaccgtcgaCCGCCCGCATGCTCTTGAACTgc
cgctcaaaaaagttcattatttcttaaaaactcattattttcttcttttc
ctgtgccaagctatccaaaacactcaaagtgaatcaaaaataacatcttc
GCTAACAAAATGTGCGCCTCGAGTAAAAAACATGGTTCCAAACACGTCCG
CGAATGGGGAAGGCATTTTTTTAAGCAGAGGGCGACATCATGGGCGTTTT
CTCGAACGCGTTTGAATTTTTGCGCATGTAATTTTGATTCCGAAAGTGAA
AGCAGCTCGATTTAACGGTGGAATTCAACTTCGTTGGAGATTGTAAGCAC
CAGgtaggaataatgaataatgaataatgaaattttgccgcatcaaatat
tttttgaaacgcgacggtaaacagaacatcaaattcccatcgcctTNNNN
NNNNNNNNNNNNNNNNNNNNNNNttaggagacgcctcctgattaggagac
gcctcctgattaggagacgcctcctgattaggagacgtctcctgattagg
agacatgtaggtcgcttggggtcgcttgattaggagacccgtctcctaat
taggagacataaaattttgatctcaattttaagaactttaggcttttccg
cgcattttgaaactagttttaatggaaagagcagcctcaaatttagcctg
ggaatccaagctcataattttagaaaaaacaaaaaatacctcacctcaca
aagttctaaaattatagagcttggtgcaggtagattagtctgacacagaa
tgttataaacagtctgtgtgtgaacccttgttgacagagtttctgaactt
tggaaacccaggcagacacacataattaacttaccataaaactccTCTAC
AATCTATAAAGACTTTCAAAGCTActaaaaaccaaataaaaacatcagcc
acatgtatttagacttccagccaacagccattttgttttgaaatgaatct
atgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccctgcaggcgagttacctgcg
ccaagcgttaaaccagcagcaaaaatatcataaactagactgtgaaaaaa
agtttaacgcttggattcccaggctacctcaaattggtaaagttttaaaa
aaattatcaaaatttctcggtgcaatcgatcacaatcctaatataaaata
aagcactacaaggaagcccctcttgatttttttcatgtccgccatttttc
tttttgagacgcttttgttcagaagacagattcttacttctgattggttc
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcaggaggcgtctcctaataaggcgactgtcccTGACTGT
TGGCGGCAAGCtaaaatatgttccattcgCGTCATGAAACATCTTCAATT
GGTCGGttggtcggtagtaaattttgtcgggtTTTTAAAATCTAGTAAAT
CCCGAAGAATCAAGTAGTagtcggcaatcaacaaaattttttgccgccat
cttctGCCAAATTAACgggccgtcgacaaacgattttccttttttttaac
ggcttctggccgtaaggggtgggagggggtcactgcaataccgttaaaaa
aaaagtaaaaaaaaagggaaagtctcacttacaaatttcatccgtccaaa
aagtagaaacatgtGAAGAAAGGCTAAGACCAAAGCAACCACACGACATT
CACCTTATTCCCGATCACCAATTAATGCTTCGACGAAAAAAATGACTGGT
CACATGACGAAAGTCGGCAATTTTTCCCTCCGCCTCAGTTGACtccttgc
tccacccatcccgcCCTGACTTGCTGCAGGTCttagagtttcaaaattga
aaggtcacggctcaaaaccacatgtttattccgtgcgaaaagaagaactt
tgaggATTACGAATCGTAAGAACATGTCGGCCATGGCCCAGTGAAagtta
cttttgaagaattttttggccgctaagacgtagggggggagggggtctga
acctTAACAGCCTCaggccgttaaaaaaaaggaaagtcgtttgtcgacgg
cccctaaaTGTGCGCGCGCATGTGTGAACCTTAAAAgcggaccttatttt
cggctctcaagggtattggccctaccgcgTCGCTGGATTTCAAcaagggt
acatgaaaaaactcaaataggactcaatgtgggttaagtaaacaaaaact
cgTAGCGAATGATGATTCAAAGAAGTGCTTAGCTATCAAAATCTTTTTCC
GACATTTTTCCGACTTGTCCGACTCGGGATTAatgttttgaaggtgagtc
agtcggtgaaggcttcttcataaagacgaaagacatgtatctatttttca
gatccggtatgcgggaatagtgtcaggacctgcaggcgacctagTAGGGT
TttgtatgggtgtggtttgggtgtggttacgtatcagattggctagtaAT
TGGGTtattattatcagttagggttagggttggagctcgaaacaagcact
cttttgtgattttctcctAATACAGACTGGTCTggagtttgtacaatata
aatagccgtcagaagcgCTATCCTGGTATGagtccgtggcgcagtggata
aggcaatgggtttcaactttgcatttagtgggttcgaatcccaccgatgg
cgatctgtcggtaagtcattcagttagaaaacatagaaaataactcacaa
agaaccataaagtcagaaaaactacaaacaagagactggaaagtacgaaa
taagtccagatctgtctttcgtctttgtgaagaagcgagtcggtcgggcg
acgcaaacggaacatattttagcTTGccgccataaaaacaatgatagagc
catgcataattactgtatcatgcatattgtaataattatgcatggtttta
tcattgtttttctgttggactacataattattcaacagtgtggcctcttt
gaaaaaacgTTTATTACTGTAGTTTTAAGTTATTAAAAAATGACATCGAC
CAGCAAAGGTCTATGCTAAATGTCTGTTGTCAAATGAGGAAACTTTTTTT
CCAGTGGATAATATATCTGACAGGTTGTAAATGAGTCCAATGCGTTCGGT
GTGTGATAAAATGCTTAAGAAAAAAGTCTGGTGTTTGTCTGATGTTAAGA
ATTTGCATGAGGATGAGATCACAAGTAACTTGTGTTTGCGTCTTCCGACT
GAATTTTTGAGTCAGAAAGTCACAAAATTGTCAGAATATTATCCAATTCC
ATCCATTTCATCCTTTGTTTCACCTGCCCtctttatttcaattttgacag
ttacatcaatatgccaaaaacattttgttcaaccaccttcacttcaagat
aggccaccatagaatgaacttccttttataggatgaactatattcatgtg
gctttcagccttgcactccatcgcagaggctaatcaattttaatgacttt
tttgactaatgaccaagttataattttttaatttttttatatttgagtat
taaaaaggcatgcattcaaataagaAAGCACGACCGTgcatgaaaaaaag
aaatttaatcaaaattttataaattgaaACATTCACTGTGCAAATTACAA
CAAAGGTCTCATTTTATTTTGGTCTCACAGGAAATATTAGAACTGATTCT
TCCACAATTTGTGGTGTAGCTACTTTAAAAACATGACAAGTTGCTATTTG
ACTTATATCTAGCTCGAGTTGGATTACGATTGGTTCACTATTACAATGAC
CAAAAGATGTGGCCTCAatcagtgtagctctaaagccATAAGAAAAAGCA
TAGAGTAATAGTTTTAAATCATTGCTTGAATGATTATTACTTGTTGTTTG
AATGTTTCTTGACACATGACAGAAAGTCTTTTGTGTGATAATTGTCAAAA
TATGACAGTGTGGTAATTAATTTTGTTACATTTGGTAAATTGATGTTTGG
GAGTGCACTTGATAGTTTTTCATCTGTTTAATATTTTGGTTTGGTTTCTG
GATGCTCTTTTAGGGCTTTAGAGATACACTAGCATATGCAAACTTTCATT
TTAAGTTtcaataagaacattttgtaAAGGTGTCTTGATTAGGCACTTGG
TCTTGGATATATTAAGTGCCTGTCTCCATATTCCTCTTACTATAGAAATG
TATATATATTTTCCAGAGTGctgatttacaaaaaaaatcattgattcTGT
AAAATATACACTTTATCTTTTTAGGTCAGAGAATGGTCTTCTGGTCTAAG
AAAAGAAGGAAGAAAACTTGATAGACAAATTAGAAGTAtgtttacttttc
ttttctttttgatgCTACCATATAAATTGGTATCTACACCTTTTAAATAT
GCTGTAGTATTTAACAATTTTCTAGTATCAATTTTTGTCTAAAAAGTTTT
CACTCTCAGTTACGTAATAAACGGGTAGTTGAACAAATCCTCAAATTTTT
ATGGGGGATCTAGTCGCTGTGATTATCTCTCAATAATCTCAATTTTTGCC
ACTTACCTAAAAAAGGTAATAATAGACCAAAGCctggctatttagagcaa
aataaggaaaTCTTCTTTTGAAAgctgaaagaaattttaaagattaATAA
ACAGGAGCCCTAATAAGGTTGTACTTTAGTACTACACCTGGGACATAATA
GTAAATGCATTGATCCTTAGCAAATGTAAATCTCTAGTCTATTTCTCAAT
GTTTTAATTTACCAAAAGTTATATGTGAGCGTTTACCTGATTTACTATTA
AGATTTTGCTATAAATTTGAAATTCTCTATCTTGATTTTATCTTAGCTAT
CAAAATGGAGGAAGCAAAAGTTCAAAGATCTATCAAGGATGCTGCCAAGA
AGGGGCAAAAGGATGTGTGTACCATATTAGCCAAGGAAATTATCCAGTCC
AGGAAAGCTGTCAACAAACTTTACTCAGCCAAAGCTCAATTGAATTCTGT
TGATATGCAAATGAAAAATCAATTAGGTAAATAATGAAGAATGTCTTTGA
CTATAAACTTTGAATCAGAAAGAaaactttatttcatttattttttaata
cagGATGTTTAAAGGAAAAAGTGTACAAGTTTCATCTGAGATTATTAAAA
AACTAATAACAAGAAGCACAACTATGGTTGAATGTTTCATTTAAAGttat
ttaaagaaattaaatatttatatttat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004649TCONS_00004649Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004649-proteinTCONS_00004649-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:735422..741998 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.84	59.05	46.3	44.51	33.43	27.48	44.7	50.93	52.95	41.2	54.13	39.66	54.2	45.07	42.07	44.89	57.76	52.73	46.35	60.54	46.56	47.98	49.66	51.98	60.12	64.71	67.01	50.67	49.18	47.37