XLOC_004281 (gene) - C. hemisphaerica

Overview
NameXLOC_004281
Unique NameXLOC_004281
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:341794..351560+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004281 ID=XLOC_004281|Name=XLOC_004281|organism=Clytia hemisphaerica|type=gene|length=9767bp|location=Sequence derived from alignment at sc0000078:341794..351560+ (Clytia hemisphaerica)
TTCAAACTATAAAAACCGGCAAACCAACAACTTTGCACAGAGAACGGGAT GGGGGAGGGGTGCTCTACCTTTGTGTTATGTTTTGATAGTAGATTTGATC TGATGAATCAAACTTTGTACCTGTGTAATTTGTTTTTGAACACTAAAtga tttttcttatattttgttTAGAGTAAACTATGAAAAAATCTCAACAATCT ACACTCTTTCAAACATGGGGATATGCTGACAAAGAAAAGAACGATAAAAA ACGgaacaaagagaaaaaagaaattaaacaaaTCAAAGGAGCAAGTaaga tttttctctttcttataGTTCCTGTCATTAACattgaactttttattgca TGATTTGCTCAATTGAGGTGTTGTGTTGAGCATAGCTTATTTGTTTTATG ACTTCTGGCCCAGCTGAACTACTTAATATTTTCACTAAACTTTTGCAACT TTTACCTCTTTTCAGTTGAATTTAAAGGCAAAAAACCTGAGAAACAAAAT CAGCAGAAAGATGATATAATTAACCTTGATGACTTTGATGATGATGACAT TTTCAATAACATAGATACACTAGACTGCCAGCAACCGCAAACCAGTAGTA ATAGAAATGATAAACAAAACCACATTCCTGCAAACAGAAATCAACAACAC AATAACAATAATCAGCAAGACCAAACAACTCGACATCAGAACAATGAAAA ACAATTGCAATATAAACCCCAAGAAATTTATTTGGACCCTCGAAATAAAA ACCGAACATTTCCACACGAAAACATACCTGGATTTGATGAGCAGTTTGGG TCAACCTATATCTACCCAACAAACTACCCAATAAGAGACTATCAGTTCAA TATTGTAAAAAAAGCTCTAATAGAAAACACATTGGTGGTCTTACCCACTG GTCTTGGTAAAACATTCATCGCTGCTGTGGTAATGTACAACTTCTATCGT TGGTATCCTCAaaggaaattaatttttatgGCGCCCACCAAACCACTTGT AGCACAGCAAATAGAAGCTTGTTATAAAATCATGGGGATACCACCTAAGG ATTCCATTGAAATGACAGGTTACCTTTTTAATTTGGAATGGTAAATTAAG ATGATACTTTTCTCTACTGTTTTTATTAAGCATCATTGCCATTGGGTTTC TTACAAAGAAGTTTACAGTTTACCAGCTTTTGGCTTTGACTTGCTTTGAC TTTGCTTTCAGGTAATATTGCTCCTACAAAAAGagaaattgaatggaaaa ataaacGAGTATTTTTCATGACACCTCAAGTATTACAGAATGATTTAGCA AGGGGATCATGCAATGCTGCTGACATTGTTTGTTTGGTATTTGATGAGGC TCATAAAGCTCTTGGTAGCCACGCATATTCACAGGTGAATTCATTTGGAC ATTTTGCCTTTCTTTCCCGAAATTTACGTCAATTTCTTGCTTTTAGTTCG TTGATAATGACGCCTTCATAGTGTATGGAAAAGTATGTTTTCATAATGAG GTAAAGAAGGGATTACAGTGAATGAGCTTGTTAGATTATGAGAAATATCA TGGCTAAGATGTGAATACTTGGATTcataaagtaaaattaaacGGTTTAC TCATCACAACACAAAAGAATCACTCAATTTTTTCAGGTCATCCGAGAAGT CAATGGGATTCACCAACAATTTCGTGTCCTGGCTTTGAGTGCCACCCCTG GTGATAATATGAATGTAAGTTACTCTTCAAAGTATTCTGACTGAATTTTA GTCCATACTCATCAATTAACTTCAAAAGAATTGAGTACTTGGGGTGTTTG TGAAGAACCTATGAAATTTAGCGCACATTAGTAATGAGACAAGGGTGCGT TCATAAGCCATTGATTCTGATAAATTACTTTACAGTTCACTCCTAAACCT ACAGGCCTTTTGACTTAAGTATCTAATATTTTCATCCATATACAATTGAG GTTTAAGATTCCAAGAGATTTTCATATTCTCTCACTTTAAACAAATAATC ATTAGTATTATCATTTTCATACTTAGGCTGTGCAAGAAGTGATAAACAAC CTGATGATCTCTCACATCGAGTTGCGTTCTGAAGAAAGCATCGACATTCA GAAGTACGTTCATGAGCGGAAGGTGGAGAAGATTGTCGTTCCTTTATCTG GTGAAGTCAAAAATGCTCAAGAAGTCTTTTTAGAGGTACCTATATTAAAA TACTTTTCCATATGCATTTGTAAGAAAAACTGTTCCATGCTAGACCTAGT ATCCCCCGGGCATTGTGGCGTTTGCTTTGTCCTGCATTGATTTCTCATAG AATGCTAAATCATTTTTTCTtgtttggggaaaatttttctatgcATGGGG GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNGCTAATACCTCGATAGAGGGGGGTA GGGTGATCTACGTTTTGAGTAATCGAACTGGGGACTAAGCTGATAATTCA AataattttcagctttcaatctttttcaaaaatcaatttttttagctTGT CCTAATGTGACAATGTATCATGCTAATATTTGTTTGTaggaaaaactttt ctttgtttgGGTGATTCTTGTTGAATTTTCTTTAAGTACTTTTAGTCACA TTCTTAAATTTTAACCAGGGGCCAATTTCATTAGTCCTCAGAAAATCTCT GGGGACTGGTCTGGTCTACATTCTATGCTGCTGTATGGGTCGTTTAGTAA NCCTCAGAAAATCACTGGGGACTAGTCTGGTCTACATTCTATGCTGCAGT ATGGGTCGTTTagtaatttttccattttcgaTTTTCTCTCCGTTCTTTTC AGGTTTTACAATCGATTGTTCTTCGTTTGTTTTCACGGAAAGCGATTTGG TCAAAAGATGCGTCCAAAGTATCAAAGTTCATGCTTTTGAAAGCTCGTGA ACAATGGCGTGCTAACAATGCTTTTCAAGACAGGGTATATATTGGTTTTT AAGGCTTGTATTGATTCGAATGGTTGACCTTTCTTTCTATTGGCCAAAAT CTTTTCAAGAATAATTAATATCTATATTGAAACTGTGTGTGAAATTTCAA AGTGGTATGAAAGCTTGTAGCTTGAGATCATGTTCGCACATAACGGTTAT GTTTCACtacgaaacgaaatgaagccactctattggttagaagtgacgta aaacttgaatttaaCGAACATCGTCCCCTGCGTATTAtaagcttttttat gcttactgatagcgctaggtAATTATTTCTctgtcaatcagtaacgtaaa taaagcctgggatacacggggacaaGGTTGGAATTTAACCTAAAGGATGG CTTCATTTAGTTTCGGAGTGAAACGGACCCATAGCGTGTGAACGTGTTCT GAGAGTTGGGTTACGATTTTGGTACCGTCAAAAGGATTATTTTCTACTTT CTCTAACGCCTGCTCAAGTGGTCAGTAGTTCTGAACTTTAGAGTACTGAT TTGTACTTATTAATCAACACGTCTATACAACTGTTTCTAGTTTTCTTATT TCATTTAGACAACTGCTGGATACGTCGAAGGAGATTTCGCACTATTGATG TCACTTTATCACGCGTACGATTTGCTGCAACAACACGGTCTCTTATCGTT CTACACCTTTATCAAAGCTCTGTTGTCAGGTAGTAAAGGTACATCAAAAG CCAAAATGGAGTTGAATCGAAATGAGAAATTAATGAATTTGATGGAAGAC TTGCATTCGAGAATCGAGCCTGAGGACGGAAACCAGAGTTTGAACGAGAC AATTGTAGCAGAGAAACATATGACACCTAAACAACGCTTGTTGAAGTCCA TTCCCAAACCACGTAAGAATTTTGTCAGTCATCCAAAGATGGTCAAACTG GAGGAAATTGttgttcaacattttcaaagttaCGCTGACAAGATGATCGA ACCGTGCTCCTCACAAACACCTTTGAACACACGTGTTATGATTTTCTCGC AATTTCGTGATAGTGTACAAGAAATCACTGCCGTGTTAAGTCGTCACGAA CCGCTGGTCAAATGCATGTCTTTTATTGGTCAAGGGAGTAAAGATGGCGt gaacaataaaacaaacaaagggTTGTCACAAAAAGAACAGATAGAGGTTT TATTGATCAGCTTTTCTGTTTAATAAATTCTTGAACCCATATTCCTTTTA CCATTTTGACATTAAAGTTAAAGTTaagtttttgtcattttaaagtGATG CTAGAAGGTAGTTTCAATTCTATACATTTGATTTACGAGAAAGTGTCTAT CTAATTCGAACTCTATTAAAAGTCACAGCctttttttgtctccactgcag attattttgagacagactttagttcttTTTAAACTTCGGGAAACGCGACT CGGGAGAAATAAAGATTCATTTTATGGTCACAGAAAACTTTCTacacact ttcactttcacactTCCTTTGTAGTCACACGTGATAATAAGACAAAGTGA TTATCTTCAAATTTTCTCATAGATTTTACGTCGATTCAGAGCAGGTGGCT ACAACACGGTAGTTTCTACGTGCGTTGGCGAAGAAGGTCTGGATATAGGT GACGTGGATTTGATCGTGTGTTTCGATGCTTCTAATTCACCGATTCGCTT GGTTCAAAGGATGGGAAGAACTGgtagaaaaagaaaagggaGGATCGTTA TTTTGGTCGGTGAAGGTAAAGAAGAGATGGTAAGTAAGAATAAATTCGAT TATGAAAACATTACAATTATCTGAAAAGAGCCTTAATAGGGTCCGTAGTC ACCTGTTGTACCAAGAAATTTAAATAAAAGAGTTTAATTCAAGTTCCTTT GCTATACGAAAATCTGTCTTTACGAATCATATACCTTAATGCCCTTAATT TTCGCGCGCCTTTTATCTTCGAgccctttaattttcgcgcgaACCCCTTA AAAACGACATTTCGCGcaccctttaattttcgcgcagccctattattatt attattattattattattaattttcgCATATCCTAAAATTTGTTTCTCTT TAcatattttgcatatttttttctggccgttttctagtcaaatcctcata aaaaagtctccaaaaggcggacacttatCTGTTTCCCCAATGGTGTCTGC TAAATAGAGGCTCCACTGTACTATGAATAAcaaatctttatcaaaaatca TGATTAATTGCGAGACACAAGTTATATTGCTTCTTTCATGACTTTCTCCT TAGAAAAGCCATAAGTGACTAAAAATTCCTTATTTGCTAATTCGCGCAcc ttttaattttcgcgcagtGGTAGTGCGCGAAAATTAAGGGCATTAAGGTA TATCCGAAATCGATTCAAATCGATTGCAAAATAAAAAGGTGTGCACGAAG CCTAAACCTTGCTGTATACGTTCAAATCAATCATTattttggattgattt tattgAGTATGTAATGCTTCTTTTGGGCGATATCAATTTCTATAACAAGC ATTATGACATAAACTCTCGTCGATAGTATAATGTACCTGTCCCGTCTTTC AATCCTTTGCAATACTTAATCAGTAGACAATTCGTGGGCAAAAAGTGATG AAAACATTGCTTGCCGACGAAATTTGATAGCCGACGATTATTTTTGACCG ACGATTAATTTTTGCTAACGAAAGTAATTCTTCCAAATAAATTTGGTTAC ATTGTGTgaatatttttcgttttaaaTTGAAAACTTTAGCGCTAAGGGCC ACTTACACCCAAAGGATAGTCACAGAAATTAAAGGAAATGCAATAATTGT TCAGTATATTAGTGTTTTCCAttgttgatttttctaaaaagctgACGATA CTTTGGTTAAAAAAACCACCGGCAAAGACTATTCGTCGTGACCAAGTTAT TGGGAAANGCTTGCCGACGAAATTTGATAGCCGACGATTATTTTTGACCG ACGATTAATTTTTGCTAACGAAAGTAATTCTTCCAAATAAATTTGGTTAC ATTGTGTgaatatttttcgttttaaaTTGAAAACTTTAGCGCTAAGGGCC ACTTACACCCAAAGGATAGTCACAGAAATTAAAGGAAATGCAATAATTGT TCAGTATATTAGTGTTTTCCATTGTTGATTTCTCTAAAAAGCTGACGATA CTTTGGTTAAAAAAACCACCGGCAAAGACTATTCGTTGTGACCAAGTTAT TGGgtattgaaaaatcttttgttttacgCCGATGAATTTTCTCCCGATAA GGTATTGTAAAACGGATAAAATGTTTCACTTACAGATCTACAAGAAGAGT TTATCAAATAAGAAGGGCATCCACAAGAACCTTTGTAATGCAGCCAAATC TCTGGTATTAAACGAGGAAGCACCAAGGATGATTCCAAAACATCTCAACC CTACTTGTTACCAAATGAAAATCAACATCCAAGAAAAAACGAATGCGGGA CAAAGGTAAGAATGCTGGCTCTCTTTTAAGTGGCGGTagtgtaagttggt ctaatgtcgacatccctcgtctattTCCGACACACTTCTTTAGAGGTAGG AATAATAGGCAGGCTGGGATCGCTtatagacaaaaaaaaaattgtttcca tCAGCGATTCAAACATTCTGattattcctatctttaaagaagggtgtcga aattcgAAGGAgggtgtcgatattagaccaacttacggtagcgGAGAAAG GATGAGTTTGCTTTACAAaaattcgttcgttcgttcgcctGCTTGTTTTT TCGTCTGTCTCTTACCAGCTTTCCTCGGGATAAATTCATcagttttttct atttattgCATGAAGACAACGGACTATACTCTCTAAAAAGTGGTAGAAGT TATTTTTCctggaaattccctttaaccgtCTATGGGGAAACCATGctata gtcaggtagaattgcatAACTACCAAGAAAAAAATGGTGTGGAGATGAAA TTTTCCAGGAACGTGTCAGGAATCACCAACAAAAAAGCCCcacccccagg aagatgggaaaACCCTcaaattcataatggcggacatggtacttttttct acaattaatcAAGGGAAGACCCTTGATAActgatttttaatggttttcaa atgtcaaaattaACTATACAGGGAGATATCTCTCGatgagtagataaaga aaatggggtcacttttgaaatttggaccacgtggtcccgagatatgacct ctaaagtccaaaaaatgacgattctgatgacgtcagcatttttactgaGA TTGATAAATTGTTTGTCCATTTTTGTCCCAGTTTTGGTGGTTTATGACCT AATTCTATCTGACTACTACAATATGTGTTTAATCTGATATActgatgaag tcacgaaagatgaagaaaatttctacataaacagtcgcttcatttttctG TTCTATAAATTTGCTGCTTTTACATTTAACGTTTTCTATTTAATATCCTA TATTAGGTCATATTTACTGATACATATCTCATGATTGAAAAGTGCtatta acttaaaatttgactATGTGATATGATATGACCAGTGATAGGTAGTGTAT AATGGAAATTAACTTAAAGTCTTATTGTTTTGGCCCATTTGACACCTATT tgtttggtattttacagaccagcaTCTATAAGAGGGTTTAGTTTAATGCT TAATTAACAAAATAAACCTCCAACCtatttcgttcgttcgttcgttcgtt cgttcgtccgtctgttaccagcttttttcaaaattggctcattagttttt tctgattttaagcACGNcccttcgttcgttcgttcgttcgttcgttcgtt cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtccg tccgtccgtccgttaccagcttttctcaaaattggctcattatttttttc tgattttaagcACGAAGATGCAAAATGCCAATGCCTGAAATATGACGGAG accgattttcgaaaagaaactttatcattactttaatgggataaaatttc gcgggtattaaatttcgcggttgggcctatccgcgaaattcgaaaatttc gcgtggacttaatttcgcggttggcaCTATTGGatgacaatattttcacg attttgtatctttatactgtcaaatcatgcatattggttgttgaaataca cattatttgcgcttttttgatgcaagtaaccattcgaaaagtatttattt gacatattttgagtttttattagaaatatttcgcggatggggcccttcca aatttccattgggatttaatttcgcggattttcgcggatgacacccaaat ccgcgagtaccgcgaaatttaatccccgcaaaagtttatcccattaaatt agtttttttctgacttgTCTGCATTTTCttactatttttttcattttttc cccgTTCTCTTATTACATCAACCTTCTGTTGGTTCATTCAGCATGTAGTT TGTTGTTACCATGGTTACTATAGTATTACTTCAATAAAACAAAGTTAaga ttctttactttttttctacttttaaaGCTTTAGTTTTTGCTAAATGCGAA TATTGGATATGTTTTATCTTTAAGCACCGACAGAGACAAGAAGAACGAGA AGACTGCTTCGAAGACCAAATCAACTAAGAGGTCATCTTCCACCGCCACC AATGGCAACATCAGGAATCTCCTGGGAAAAGGTTATCTCGACCAGGACGA ACAGAAATACtataaagaacattttgaatTCGAACTCGGTTGCGACGCTT GTCAAAAACAGCAACGCCTTCACGAGAAGAAACCTCTTTGTAGCCATCGA CTGTCTCGATGGGCACCTTGGCAAACTTCCTTACAATCTTACTCGAAAGT TGGGCATTCCAATCGGTCGAAAACATTCTGCCGATTGATGGAGGCTGCAG AGAATTTTCGGTCCCCGGAAAATGTCGAGGATTATGAAAAAAGCTTGGCG AAATATGTTGTGGTGTCATGTGAAAAGAAACGAACGCCCCCTTCCTCGAC GACAAAAAGTGCGAAGAAAACGGGCAAAGATTTCCGCAAGAACATTATTA ACTGTGACTCAATGTCTGAGGATAGTGATTTTGATTTGGGACGGAAAGTT CCTCCTCTGTCGAAGAAGAAGCAAGACGAAATGAAACCTTGTTCCTTGGA AGAAATGAAAGAGAAGATTGAGAAATCAACAAGCAGCAAATCATCCAAGA AGTCGCGAGTGAGGTTAACGAGGCTTCCAAATGTACCGAAAATCGATCTA GATTTGAGTGATATATGTGATAACCAGATTGGCTTTTGTAGTCAGAAGAC AATGCCGACTTTGTTTGATCGATGCCAGCTGAAAAAGAGGAAACGAGAAT CaatgccggcttttgacgaagGAGAAGAGGATAGTGATTATGATTTCGAT GGGGACAGGAAACGAGTTAAGTTGAATGAAAGTATTGACGACGATGACAA TTCGTTGAATGGCGAGAGGGATTTGTTGAGTGATGACGATGAGAGTTTGT TGAACGGGAATTTGTTGGACGAAGATGGAAATCTGTTGAATCGTGAAGAA CATTTGTTGAGCGGTAAAGAGAATGAAATGAAACAAGACAAGGACTTCAT GAATGGAGATGatgatttgttgaaaaatggtGTTGATACGGAAGATAAGT TTTGGAATGACGATTTTCCTGATAATGTTGAATGTGAAAAGAATAAGGTG ATGAACAAATGTTTGGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007585TCONS_00007585Clytia hemisphaericatranscript
TCONS_00007586TCONS_00007586Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:341794..351560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4 4.32 3.16 1.79 8.68 7.25 6.32 6.65 2.77 3.88 3.42 2.11 2.69 3.35 1.98 2.79 3.16 3.2 1.05 1.62 1.96 2.13 2.78 3.67 10.75 9.72 1.11 0.6 3.01 3.75