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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007586 ID=TCONS_00007586|Name=TCONS_00007586|organism=Clytia hemisphaerica|type=transcript|length=3547bpRun BLAST on NCBI protein sequence of TCONS_00007586-protein >TCONS_00007586-protein ID=TCONS_00007586-protein|Name=TCONS_00007586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1122bp MKKSQQSTLFQTWGYADKEKNDKKRNKEKKEIKQIKGAIEFKGKKPEKQNRun BLAST on NCBI transcript from alignment at sc0000078:341794..351560+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007586 ID=TCONS_00007586|Name=TCONS_00007586|organism=Clytia hemisphaerica|type=transcript|length=9767bp|location=Sequence derived from alignment at sc0000078:341794..351560+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:341794..351560+ >TCONS_00007586 ID=TCONS_00007586|Name=TCONS_00007586|organism=Clytia hemisphaerica|type=CDS|length=3366bp|location=Sequence derived from alignment at sc0000078:341794..351560+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007586 vs. Swiss-Prot (Human)
Match: FANCM (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2) HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0 Identity = 305/592 (51.52%), Postives = 414/592 (69.93%), Query Frame = 3
Query: 609 GFDEQFGSTYIYPTNYPIRDYQFNIVKKALIENTLVVLPTGLGKTFIAAVVMYNFYRWYPQRKLIFMAPTKPLVAQQIEACYKIMGIPPKDSIEMTGNI-APTKREIEWKNKRVFFMTPQVLQNDLARGSCNAADIVCLVFDEAHKALGSHAYSQVIREVNGIHQQFRVLALSATPGDNMNAVQEVINNLMISHIELRSEESIDIQKYVHERKVEKIVVPLSGEVKNAQEVFLEVLQSIVLRLFSRKAIWSKDASKVSKFMLLKAREQWRANNAFQ-DRTTAGYVEGDFALLMSLYHAYDLLQQHGLLSFYTFIKALLSGSKGTSKAKMELNRNEKLMNLMEDLHSRIEPEDGNQSLNETIVAEKHMTPKQRL--LKSIPKPRKNFVSHPKMVKLEEIVVQHFQSYADKMIEPCSSQTPLNTRVMIFSQFRDSVQEITAVLSRHEPLVKCMSFIGQGSKDGVNNKTNKGLSQKEQIEILRRFRAGGYNTVVSTCVGEEGLDIGDVDLIVCFDASNSPIRLVQXXXXXXXXXXXXIVILVGEGKEEMIYKKSLSNKKGIHKNLCNAAKSLVLNEEAPRMIPKHLNPTCYQMKI 2372
GF G+ +IYPTN P+RDYQ +I + AL NTLV LPTGLGKTFIAAVVMYNFYRW+P K++FMAPTKPLV QQIEACY++MGIP EMTG+ A T++EI W +KRV F+TPQV+ NDL+RG+C AA+I CLV DEAHKALG++AY QV+RE+ FR+LALSATPG ++ AVQ+VI NL+I IELRSE+S DI Y HERKVEK++VPL E+ Q+ ++++L+S L R + +D ++K+ ++ AR+Q+R N + G +EG+FA+ +SLYH Y+LLQQ G+ S Y F+ ++ G+KG +++K EL RNE M L L E + A T + ++ K +K SHPK+ KLEE+V++HF+S+ E + + TRVMIFS FRDSVQEI +LS+H+P+++ M+F+G S K+ KG +QKEQ+E++++FR GGYNT+VSTCVGEEGLDIG+VDLI+CFD+ SPIRLVQRMGRTGRKR+GRIVI++ EG+EE IY +S SNK+ I+K + + + L + +PRM+P +NP ++M I
Sbjct: 74 GFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI-WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHL--------------ECMFARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWN---AENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHAS-----GKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQSQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFI 642 The following BLAST results are available for this feature:
BLAST of TCONS_00007586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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