XLOC_004290 (gene) - C. hemisphaerica

Overview
NameXLOC_004290
Unique NameXLOC_004290
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:581492..586033+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004290 ID=XLOC_004290|Name=XLOC_004290|organism=Clytia hemisphaerica|type=gene|length=4542bp|location=Sequence derived from alignment at sc0000078:581492..586033+ (Clytia hemisphaerica)
TTCAGTggataaaaaaactgaaaaatataaaagatgaATGGAAATGAAAG
TTCACTGGATGTGAATGAAGTCTTTGAATTCATCAAATCTCATTTCAATG
GACATGTTGCACAAAACTTCAAAAGTAAGCATGTTTTTATATTTGCATTG
TATTAGTTCAAACTCTCACTTCTAATGCCCCTCATGAAAGGTTGTCGTgt
caaagttcgaaaatcgacccttggAGACTGAATCTCGTaaattttatcca
tttttgacgtttttgccacTCTTAAAGAGACTATTTTGCCCAAAATTTCA
GCGagaatcttcaaattttagttgaaatttcaaaaatttatgaccctttg
agttgagggagtcgattttcgtgattttgaaacccttacagagacccgat
tgctttttaatagtttttgtacCCCTCCGAGGGACTTTCGAGAGTTTGAA
AAAGGGACCTTTATGGCCTGCACATACCCGGcgccaattttgcctaagta
tcccccccccccggtgtTAGATTGAAGATTTCATGGCACAGTTCTACAAA
AAGCTGATACTACTACTTTTTCaatttacacctttttttataagaatgtc
caaaaTTTTGGAAGCGTTCGAATggttgttttaactttttgagttcttaa
aatgttcttaattataccattttgtgagaatttttgtgtaattttcaaAT
TGAGTGTTTTGCAGCCCataaagccttgaaatgttcttaacttgttctta
acattttagccatcgaagccttgtgttcctATATAGTTTCTCTTAGTTca
aattatatcaaaatttaCTGCTTTTTTGTCTTCGCTGAAGTATAACTGAG
AATTTTGGTCACAAGTTCTTTAGAATTGAATATAAATTTTAGCTCCCAAA
ATTTActtatttttgatattgaaaTGCATCTTCATCTCAGATTCTTTCCA
ATATATTTTCACATTAATTACATACACCATACACTGTTCGTGATTGCTGA
CAGTCAGCGCGGAAAGTTTTCACTTGCTTATGAGATCACGCGTGCATTAA
AAAAAGCTAAAGGTGTAATAATAACGGTACCCACTAAACGTGTTCTACTA
CTTTTGTAAAACCACCACTTGTTATAACTTTAATTTCTTTGAGCTTGATT
ACCCTAAAGACTTTTCCGCCGAATTTCGTACAAAAACGGGGAAAATTCTT
TAACCATCTTTGTTTCAGACGAGGGGATTGACGGCAAAAACATGTCACTG
TTAGCAAGAAGTCCTGATTCATTGGCGTTACTCAATCGATTAGGAATTGC
CAGagtgaaagatattttaagaTTTCAAGATCTAATGGGTGTCATTCGGC
ATGATGTCATCACACATTCGCTTGCGACCCACATCAAAACAAATCGACTC
AATATGGGTCCAACAACATCAGTAATGCGCCCTTCATCTGTCACTTCAAC
AAGTTCGAGAAATCACATGATAGCGACGCCAAGTCATAACTCAAGCGACA
GTCCACTTTCTCCGCCCTCTTCACTACACCTACAACTGAACCCTCAACAC
CCACCACCGCCCCAACACGCCCAACATCAACCTATGCCGCTACCAGTACC
TCACTTTCAAAGATCAACGAGTAACAATATTCCTTATATTCATTACGATG
GAATGACTGATCGAACGATGGCTAACTTACAGTAAgaaatctttccttga
tttacATAAAGCACTAATTCTTATGAAGCGACAAGATATATATCCTTTGC
AAACTCGAATCCAGTCCCATTGTttgcttttttatgattctgatatcACC
CATTCATTGTATTACGTCCATCGTTAAAATCAAAAGAGTGGTGCAAGAGG
CTCTGCGCACAAGATTGCACCTGGAGTACTAGAAAATGTCTCGCACTTAA
ATATGGAACTTCTCAACgatatttgaaaacatttttatccCTTTTTTACC
GTAGGCAGAAAATTATCCGGAACGAAGTACGTAAACGCTGGACGGACGAC
GATCTTCCGACGTTCCGTAAAATGGATACGTCGAACAATGAAGAACTCGA
TGCTTTCGTCGATAAGTTGTTACAAATCGAACTTTTGACGGGCATTGGTC
GAGAATTGATTCGTAAGAAAGTGATCAATATTCTCCGTGAACGAAGGAAG
TATGTTAAACAGGTAAAAGTTGTTGTTTTTAGAAACTCTCTtataccatg
aacatataaacgactggacattaagcgagcttcgttgccgcctgtatttc
aaaattgatatgaaaaatcCAACAATATCCCCTCATGATTTATTCCAAAG
AGGtatattatcaaaatttattgttacattttatgtttttaacgaggcgg
caacgaagctagtaGCACTTTCTACAAaaaacaaaggagatggatgtcca
gtcgtttataagtTTATGCTTATACGTATTCCTGCTCGAGTCTCAATTTT
GACGGCTGGTTTTATATGTAAAAGACGGTATAAGTCTTACTTATAAAAAA
GGCAAGGCTGTCTATGCATTATAGTAGCCTGGGTACCAGAttcaaagttt
tagaaaaaaaattacttcagaCAAGATTGTacaaggtttctaaaatttct
gGGATCTTGAAACCAATTTTACCATAAATTATTCGAACGCACGGAAAAAA
ACTATCGAAAAGAACATTTTCCCTGTAGACGGGTTAGTTGGATCAGACGA
TCAGAGTGTAAACCAGGTATATgttataaaaagtaaatagaCAGTGAAAT
AGTTTGAATATCCAGGGTAATTATCTGAAGAGTTATGGAACTCTAGGGGC
AAGCTCGTCTCTAAAGTcttaaacttttatattttcatttctacCTATCT
TAGAAATTCAATGAAATGGAAGAAATTGGCGAATCGGAAAACCAACTTGA
GgtaatttggtcttctttgtCTCCAGTTATTAAACTACAAAATCGTGACG
AGCTAGTCACTCTTTCTTGCTCTAAACTCTTCCATGGTATTAGTGTGGGG
GAGCGTATCGGTAtgtccattgagtttaaagcccgaagggctagagtaga
atctctaacctttccaaggtaagaaaaagtgaagccatctatttcccatc
cagaacgcgcctaaaACGCGcggcaatcatgacgacggatggtatctagt
ggttccttgGATTTTGAGGACTgtatttttgaaatctggcaatggatttt
actttcaatccggcgtttgtgttaaaaccacgcgcgggcgttctggatgg
gaaataagtggctacATTTCCCATctaggagtctcgagtctagcccttcg
ggcttggaagtcaatgggtTGTCAGTAATAGCCTTTGTACGTTAAAAACT
TGTATGTTATGTTAGCGCCAGCCTACTGGTCTTCATCTGATATACTACTC
TGTATCAGAGtgatctcacgtttatcgcttcatAGTCTagggcaatgaat
tttgaaataagccatagatactgggtttgtgtacagacaactaATATACT
GGATACTGATTAATCGTAGACAAAAAGATAAGCAGAGACGCAAAACTAAA
GAATTGACAATTGTATCTTTTCTACAGAATGCACCGTCTTTCCTGTACCT
TGAACGAGAAGGCGAAATGACTTTTCACCAAGAGGCCTCTGGTCATCACC
AAGAAGCCTCCGGTCATCACCACAAAGTGGAAATGCACAGTGAATCAGAT
CATGAATATGATGGAGATAATAGCAACAATTCGGATGGTAAGTCtgaaag
gcttggggacacgagaagtttttttcgcgttggtgcaatgcaacatgctc
catcccaccaacctgaaacgctttctcgtgtctccaccccatttttcctt
ctaccaataaaagtgaaacacaaatgttattaaaagaaaagcctttgtta
tttttgtggTGCTCTTCAAAGCCTTTagtcaacttttttttgaagtATCA
TTATCGCGTGTACGATTTTTTTCTCCGAACGGATCTATCAAAAATTCAAG
TTCAAAGGTCAAATAATCTGCTAAATAATCGGTACACTACAAGAATAAAG
TGCCGTTAAAGCGAgatgaaatcaagaaaatcGTGGCGTACTCAAGTAAA
TTGtatttcataaaatctttttcCTTTGCATTTTAGGTCCTTTGAAGAAA
agattcaaaaacttcccgTCGGAtaacaaaacttaaaaacgaaaaaattc
aAACGATAAACTGCGACAAAGTCAGATTAtatttttatactcttttgaaa
actctttcctttctatttttgtacagattttttacaagctcttgcgtttt
ttgataaaaaaaatatttttctacatCTCTAATaactttatttacatttt
tatttaCAAGATGGAAAATTCAAGAATTAAACAAAGGGGAGGGCGGGTGA
GGGGGCGTATATTATAAGTAGGTCCCCGAGAGCACATATTTAACGTAAAT
ACATAACGCATCCAATGGTTTGCTTTGCTTGTCCACAAAATTATCTGTAA
AAAGGAAATTCACAACTATAATGGACGATAAATTGAAAATAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007603TCONS_00007603Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:581492..586033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.33	9.43	12.72	10.56	55.09	40.98	33.71	36.61	22.24	26.06	16.1	22.61	16.32	22.95	8.02	8.7	9.1	10.99	11.11	7.26	10.01	9.65	8.35	7.85	13.86	13.83	6.31	4.52	2.34	3.05