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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007603 ID=TCONS_00007603|Name=TCONS_00007603|organism=Clytia hemisphaerica|type=transcript|length=1409bp
TTCAGTggataaaaaaactgaaaaatataaaagatgaATGGAAATGAAAG
TTCACTGGATGTGAATGAAGTCTTTGAATTCATCAAATCTCATTTCAATG
GACATGTTGCACAAAACTTCAAAAACGAGGGGATTGACGGCAAAAACATG
TCACTGTTAGCAAGAAGTCCTGATTCATTGGCGTTACTCAATCGATTAGG
AATTGCCAGagtgaaagatattttaagaTTTCAAGATCTAATGGGTGTCA
TTCGGCATGATGTCATCACACATTCGCTTGCGACCCACATCAAAACAAAT
CGACTCAATATGGGTCCAACAACATCAGTAATGCGCCCTTCATCTGTCAC
TTCAACAAGTTCGAGAAATCACATGATAGCGACGCCAAGTCATAACTCAA
GCGACAGTCCACTTTCTCCGCCCTCTTCACTACACCTACAACTGAACCCT
CAACACCCACCACCGCCCCAACACGCCCAACATCAACCTATGCCGCTACC
AGTACCTCACTTTCAAAGATCAACGAGTAACAATATTCCTTATATTCATT
ACGATGGAATGACTGATCGAACGATGGCTAACTTACAGCAGAAAATTATC
CGGAACGAAGTACGTAAACGCTGGACGGACGACGATCTTCCGACGTTCCG
TAAAATGGATACGTCGAACAATGAAGAACTCGATGCTTTCGTCGATAAGT
TGTTACAAATCGAACTTTTGACGGGCATTGGTCGAGAATTGATTCGTAAG
AAAGTGATCAATATTCTCCGTGAACGAAGGAAGTATGTTAAACAGAAATT
CAATGAAATGGAAGAAATTGGCGAATCGGAAAACCAACTTGAGAATGCAC
CGTCTTTCCTGTACCTTGAACGAGAAGGCGAAATGACTTTTCACCAAGAG
GCCTCTGGTCATCACCAAGAAGCCTCCGGTCATCACCACAAAGTGGAAAT
GCACAGTGAATCAGATCATGAATATGATGGAGATAATAGCAACAATTCGG
ATGGTCCTTTGAAGAAAagattcaaaaacttcccgTCGGAtaacaaaact
taaaaacgaaaaaattcaAACGATAAACTGCGACAAAGTCAGATTAtatt
tttatactcttttgaaaactctttcctttctatttttgtacagatttttt
acaagctcttgcgttttttgataaaaaaaatatttttctacatCTCTAAT
aactttatttacatttttatttaCAAGATGGAAAATTCAAGAATTAAACA
AAGGGGAGGGCGGGTGAGGGGGCGTATATTATAAGTAGGTCCCCGAGAGC
ACATATTTAACGTAAATACATAACGCATCCAATGGTTTGCTTTGCTTGTC
CACAAAATTATCTGTAAAAAGGAAATTCACAACTATAATGGACGATAAAT
TGAAAATAT Run BLAST on NCBI protein sequence of TCONS_00007603-protein >TCONS_00007603-protein ID=TCONS_00007603-protein|Name=TCONS_00007603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MNGNESSLDVNEVFEFIKSHFNGHVAQNFKNEGIDGKNMSLLARSPDSLA
LLNRLGIARVKDILRFQDLMGVIRHDVITHSLATHIKTNRLNMGPTTSVM
RPSSVTSTSSRNHMIATPSHNSSDSPLSPPSSLHLQLNPQHPPPPQHAQH
QPMPLPVPHFQRSTSNNIPYIHYDGMTDRTMANLQQKIIRNEVRKRWTDD
DLPTFRKMDTSNNEELDAFVDKLLQIELLTGIGRELIRKKVINILRERRK
YVKQKFNEMEEIGESENQLENAPSFLYLEREGEMTFHQEASGHHQEASGH
HHKVEMHSESDHEYDGDNSNNSDGPLKKRFKNFPSDNKT Run BLAST on NCBI transcript from alignment at sc0000078:581492..586033+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007603 ID=TCONS_00007603|Name=TCONS_00007603|organism=Clytia hemisphaerica|type=transcript|length=4542bp|location=Sequence derived from alignment at sc0000078:581492..586033+ (Clytia hemisphaerica)
TTCAGTggataaaaaaactgaaaaatataaaagatgaATGGAAATGAAAG
TTCACTGGATGTGAATGAAGTCTTTGAATTCATCAAATCTCATTTCAATG
GACATGTTGCACAAAACTTCAAAAGTAAGCATGTTTTTATATTTGCATTG
TATTAGTTCAAACTCTCACTTCTAATGCCCCTCATGAAAGGTTGTCGTgt
caaagttcgaaaatcgacccttggAGACTGAATCTCGTaaattttatcca
tttttgacgtttttgccacTCTTAAAGAGACTATTTTGCCCAAAATTTCA
GCGagaatcttcaaattttagttgaaatttcaaaaatttatgaccctttg
agttgagggagtcgattttcgtgattttgaaacccttacagagacccgat
tgctttttaatagtttttgtacCCCTCCGAGGGACTTTCGAGAGTTTGAA
AAAGGGACCTTTATGGCCTGCACATACCCGGcgccaattttgcctaagta
tcccccccccccggtgtTAGATTGAAGATTTCATGGCACAGTTCTACAAA
AAGCTGATACTACTACTTTTTCaatttacacctttttttataagaatgtc
caaaaTTTTGGAAGCGTTCGAATggttgttttaactttttgagttcttaa
aatgttcttaattataccattttgtgagaatttttgtgtaattttcaaAT
TGAGTGTTTTGCAGCCCataaagccttgaaatgttcttaacttgttctta
acattttagccatcgaagccttgtgttcctATATAGTTTCTCTTAGTTca
aattatatcaaaatttaCTGCTTTTTTGTCTTCGCTGAAGTATAACTGAG
AATTTTGGTCACAAGTTCTTTAGAATTGAATATAAATTTTAGCTCCCAAA
ATTTActtatttttgatattgaaaTGCATCTTCATCTCAGATTCTTTCCA
ATATATTTTCACATTAATTACATACACCATACACTGTTCGTGATTGCTGA
CAGTCAGCGCGGAAAGTTTTCACTTGCTTATGAGATCACGCGTGCATTAA
AAAAAGCTAAAGGTGTAATAATAACGGTACCCACTAAACGTGTTCTACTA
CTTTTGTAAAACCACCACTTGTTATAACTTTAATTTCTTTGAGCTTGATT
ACCCTAAAGACTTTTCCGCCGAATTTCGTACAAAAACGGGGAAAATTCTT
TAACCATCTTTGTTTCAGACGAGGGGATTGACGGCAAAAACATGTCACTG
TTAGCAAGAAGTCCTGATTCATTGGCGTTACTCAATCGATTAGGAATTGC
CAGagtgaaagatattttaagaTTTCAAGATCTAATGGGTGTCATTCGGC
ATGATGTCATCACACATTCGCTTGCGACCCACATCAAAACAAATCGACTC
AATATGGGTCCAACAACATCAGTAATGCGCCCTTCATCTGTCACTTCAAC
AAGTTCGAGAAATCACATGATAGCGACGCCAAGTCATAACTCAAGCGACA
GTCCACTTTCTCCGCCCTCTTCACTACACCTACAACTGAACCCTCAACAC
CCACCACCGCCCCAACACGCCCAACATCAACCTATGCCGCTACCAGTACC
TCACTTTCAAAGATCAACGAGTAACAATATTCCTTATATTCATTACGATG
GAATGACTGATCGAACGATGGCTAACTTACAGTAAgaaatctttccttga
tttacATAAAGCACTAATTCTTATGAAGCGACAAGATATATATCCTTTGC
AAACTCGAATCCAGTCCCATTGTttgcttttttatgattctgatatcACC
CATTCATTGTATTACGTCCATCGTTAAAATCAAAAGAGTGGTGCAAGAGG
CTCTGCGCACAAGATTGCACCTGGAGTACTAGAAAATGTCTCGCACTTAA
ATATGGAACTTCTCAACgatatttgaaaacatttttatccCTTTTTTACC
GTAGGCAGAAAATTATCCGGAACGAAGTACGTAAACGCTGGACGGACGAC
GATCTTCCGACGTTCCGTAAAATGGATACGTCGAACAATGAAGAACTCGA
TGCTTTCGTCGATAAGTTGTTACAAATCGAACTTTTGACGGGCATTGGTC
GAGAATTGATTCGTAAGAAAGTGATCAATATTCTCCGTGAACGAAGGAAG
TATGTTAAACAGGTAAAAGTTGTTGTTTTTAGAAACTCTCTtataccatg
aacatataaacgactggacattaagcgagcttcgttgccgcctgtatttc
aaaattgatatgaaaaatcCAACAATATCCCCTCATGATTTATTCCAAAG
AGGtatattatcaaaatttattgttacattttatgtttttaacgaggcgg
caacgaagctagtaGCACTTTCTACAAaaaacaaaggagatggatgtcca
gtcgtttataagtTTATGCTTATACGTATTCCTGCTCGAGTCTCAATTTT
GACGGCTGGTTTTATATGTAAAAGACGGTATAAGTCTTACTTATAAAAAA
GGCAAGGCTGTCTATGCATTATAGTAGCCTGGGTACCAGAttcaaagttt
tagaaaaaaaattacttcagaCAAGATTGTacaaggtttctaaaatttct
gGGATCTTGAAACCAATTTTACCATAAATTATTCGAACGCACGGAAAAAA
ACTATCGAAAAGAACATTTTCCCTGTAGACGGGTTAGTTGGATCAGACGA
TCAGAGTGTAAACCAGGTATATgttataaaaagtaaatagaCAGTGAAAT
AGTTTGAATATCCAGGGTAATTATCTGAAGAGTTATGGAACTCTAGGGGC
AAGCTCGTCTCTAAAGTcttaaacttttatattttcatttctacCTATCT
TAGAAATTCAATGAAATGGAAGAAATTGGCGAATCGGAAAACCAACTTGA
GgtaatttggtcttctttgtCTCCAGTTATTAAACTACAAAATCGTGACG
AGCTAGTCACTCTTTCTTGCTCTAAACTCTTCCATGGTATTAGTGTGGGG
GAGCGTATCGGTAtgtccattgagtttaaagcccgaagggctagagtaga
atctctaacctttccaaggtaagaaaaagtgaagccatctatttcccatc
cagaacgcgcctaaaACGCGcggcaatcatgacgacggatggtatctagt
ggttccttgGATTTTGAGGACTgtatttttgaaatctggcaatggatttt
actttcaatccggcgtttgtgttaaaaccacgcgcgggcgttctggatgg
gaaataagtggctacATTTCCCATctaggagtctcgagtctagcccttcg
ggcttggaagtcaatgggtTGTCAGTAATAGCCTTTGTACGTTAAAAACT
TGTATGTTATGTTAGCGCCAGCCTACTGGTCTTCATCTGATATACTACTC
TGTATCAGAGtgatctcacgtttatcgcttcatAGTCTagggcaatgaat
tttgaaataagccatagatactgggtttgtgtacagacaactaATATACT
GGATACTGATTAATCGTAGACAAAAAGATAAGCAGAGACGCAAAACTAAA
GAATTGACAATTGTATCTTTTCTACAGAATGCACCGTCTTTCCTGTACCT
TGAACGAGAAGGCGAAATGACTTTTCACCAAGAGGCCTCTGGTCATCACC
AAGAAGCCTCCGGTCATCACCACAAAGTGGAAATGCACAGTGAATCAGAT
CATGAATATGATGGAGATAATAGCAACAATTCGGATGGTAAGTCtgaaag
gcttggggacacgagaagtttttttcgcgttggtgcaatgcaacatgctc
catcccaccaacctgaaacgctttctcgtgtctccaccccatttttcctt
ctaccaataaaagtgaaacacaaatgttattaaaagaaaagcctttgtta
tttttgtggTGCTCTTCAAAGCCTTTagtcaacttttttttgaagtATCA
TTATCGCGTGTACGATTTTTTTCTCCGAACGGATCTATCAAAAATTCAAG
TTCAAAGGTCAAATAATCTGCTAAATAATCGGTACACTACAAGAATAAAG
TGCCGTTAAAGCGAgatgaaatcaagaaaatcGTGGCGTACTCAAGTAAA
TTGtatttcataaaatctttttcCTTTGCATTTTAGGTCCTTTGAAGAAA
agattcaaaaacttcccgTCGGAtaacaaaacttaaaaacgaaaaaattc
aAACGATAAACTGCGACAAAGTCAGATTAtatttttatactcttttgaaa
actctttcctttctatttttgtacagattttttacaagctcttgcgtttt
ttgataaaaaaaatatttttctacatCTCTAATaactttatttacatttt
tatttaCAAGATGGAAAATTCAAGAATTAAACAAAGGGGAGGGCGGGTGA
GGGGGCGTATATTATAAGTAGGTCCCCGAGAGCACATATTTAACGTAAAT
ACATAACGCATCCAATGGTTTGCTTTGCTTGTCCACAAAATTATCTGTAA
AAAGGAAATTCACAACTATAATGGACGATAAATTGAAAATAT Coding sequence (CDS) from alignment at sc0000078:581492..586033+ >TCONS_00007603 ID=TCONS_00007603|Name=TCONS_00007603|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000078:581492..586033+ (Clytia hemisphaerica)
atgaATGGAAATGAAAGTTCACTGGATGTGAATGAAGTCTTTGAATTCAT
CAAATCTCATTTCAATGGACATGTTGCACAAAACTTCAAAAACGAGGGGA
TTGACGGCAAAAACATGTCACTGTTAGCAAGAAGTCCTGATTCATTGGCG
TTACTCAATCGATTAGGAATTGCCAGagtgaaagatattttaagaTTTCA
AGATCTAATGGGTGTCATTCGGCATGATGTCATCACACATTCGCTTGCGA
CCCACATCAAAACAAATCGACTCAATATGGGTCCAACAACATCAGTAATG
CGCCCTTCATCTGTCACTTCAACAAGTTCGAGAAATCACATGATAGCGAC
GCCAAGTCATAACTCAAGCGACAGTCCACTTTCTCCGCCCTCTTCACTAC
ACCTACAACTGAACCCTCAACACCCACCACCGCCCCAACACGCCCAACAT
CAACCTATGCCGCTACCAGTACCTCACTTTCAAAGATCAACGAGTAACAA
TATTCCTTATATTCATTACGATGGAATGACTGATCGAACGATGGCTAACT
TACAGCAGAAAATTATCCGGAACGAAGTACGTAAACGCTGGACGGACGAC
GATCTTCCGACGTTCCGTAAAATGGATACGTCGAACAATGAAGAACTCGA
TGCTTTCGTCGATAAGTTGTTACAAATCGAACTTTTGACGGGCATTGGTC
GAGAATTGATTCGTAAGAAAGTGATCAATATTCTCCGTGAACGAAGGAAG
TATGTTAAACAGAAATTCAATGAAATGGAAGAAATTGGCGAATCGGAAAA
CCAACTTGAGAATGCACCGTCTTTCCTGTACCTTGAACGAGAAGGCGAAA
TGACTTTTCACCAAGAGGCCTCTGGTCATCACCAAGAAGCCTCCGGTCAT
CACCACAAAGTGGAAATGCACAGTGAATCAGATCATGAATATGATGGAGA
TAATAGCAACAATTCGGATGGTCCTTTGAAGAAAagattcaaaaacttcc
cgTCGGAtaacaaaacttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007603-exon-sc0000078-1491911889:581492..581615 | TCONS_00007603-exon-sc0000078-1491911889:581492..581615 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:581492..581615 | TCONS_00007603-exon-sc0000078-1510915933:581492..581615 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:581492..581615 | TCONS_00007603-exon-sc0000078-1575043694:581492..581615 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1491911889:582710..583172 | TCONS_00007603-exon-sc0000078-1491911889:582710..583172 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:582710..583172 | TCONS_00007603-exon-sc0000078-1510915933:582710..583172 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:582710..583172 | TCONS_00007603-exon-sc0000078-1575043694:582710..583172 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1491911889:583446..583653 | TCONS_00007603-exon-sc0000078-1491911889:583446..583653 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:583446..583653 | TCONS_00007603-exon-sc0000078-1510915933:583446..583653 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:583446..583653 | TCONS_00007603-exon-sc0000078-1575043694:583446..583653 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1491911889:584345..584392 | TCONS_00007603-exon-sc0000078-1491911889:584345..584392 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:584345..584392 | TCONS_00007603-exon-sc0000078-1510915933:584345..584392 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:584345..584392 | TCONS_00007603-exon-sc0000078-1575043694:584345..584392 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1491911889:585069..585228 | TCONS_00007603-exon-sc0000078-1491911889:585069..585228 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:585069..585228 | TCONS_00007603-exon-sc0000078-1510915933:585069..585228 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:585069..585228 | TCONS_00007603-exon-sc0000078-1575043694:585069..585228 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1491911889:585628..586033 | TCONS_00007603-exon-sc0000078-1491911889:585628..586033 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1510915933:585628..586033 | TCONS_00007603-exon-sc0000078-1510915933:585628..586033 | Clytia hemisphaerica | exon |
| TCONS_00007603-exon-sc0000078-1575043694:585628..586033 | TCONS_00007603-exon-sc0000078-1575043694:585628..586033 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:581492..586033 + |
Blast
The following BLAST results are available for this feature:
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