XLOC_004293 (gene) - C. hemisphaerica

Overview
NameXLOC_004293
Unique NameXLOC_004293
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:161195..167732-

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004293 ID=XLOC_004293|Name=XLOC_004293|organism=Clytia hemisphaerica|type=gene|length=6538bp|location=Sequence derived from alignment at sc0000078:161195..167732- (Clytia hemisphaerica)
AAGGTATTCCAGAATGTAGGATGGAGCAATACGATTGCTTTTCGAAAGGT
AAGTGCAAACAGTGCTTTTCACGTAAGGAGTAAACAGCTTGTTATATTTT
ATCTTCTCGTTTTAGATGTATACAAGAAAAGCTTATTACAAGTAAACTAA
AATATTACAATTTTCTTGTTGCATCAATTGGTCGATCACCACACCATGGA
CAAGCACTTACGTCCAAATCGTTTTGAATGCGAGCCAAATGCTGTAAATG
CAGAAAAACAATGGAGACACTGGTACAGAACATATGAAAACTTCATAAAC
TCTATAACTTTCCCAGAAGGGACAACAGATCAAGCACGTCAAGAACAAAA
ACTCAGTACCCTCATCAATTACGTTTCTCCATCAGTATATGAATTTATTG
CCGAAGCAGAAAGCTACACCAGAGCGATAGAAATTCTTCGTCAACTTTAC
GTTAAGCCGGTCAATGTTATGTATAACCGTCATGTTCTTATCACCCATCG
TCAAAATGATACAGAAACAGTCGACCAGTACCTTCAAGAACTTGAGAGAC
TTAGTAAGAACTGTAACTTTGCTGCTGTAACAGCAGAGAATTACCGTCAA
GAACACGTCAGAGACGCCTTCATAAATGGTTTACGTTCTTCTGTTATTCG
TCAACGTTTGCTAGAAAGTCCTACACTAACCCTTCAACAAGCCTTCCAAC
AAGCACGTACATTAGAGCTCGCACAAAAACATTCTGACAATTTTCAATCC
TCGCCAAGCATGGTCGCTGGTGTCGCTGGCAACTCAATCGATATTCCACC
AGATGCTACCGTTGCTGGAGTTGGAAAAGGAAGCACTTCAGGAACTGAGA
AACAAAAGTGCTATTTCTGTGGTAATGACCGTCATCCTCGCAGCAAATGC
CCTGCAAAAGAAAGTACGTGCAATAAGTGTTCGAAAATTGGACATTGGGA
GAGAGTCTGTCGTTCAACCAAGACAAGTGCTAATCTAGGAGCTGCATCCT
TACCACCTGCTTCAAACCCATCACTTTGTGCCACTCAACAAAACAAAGCC
ACAAATAGTAATGACTCAACCATGACTATAACTTATGTGAATAATCGATC
TTTGAATACGCTCGTTGATTTGGGAAGCGATCTAACCTTCATCAGTGAAA
AAGTAGCAAAGAAATTGAAACTCTTTATACTACCGGCACCTGCAAAAACC
GTTACCCTTGTAGATCGTTCTCAGTCATGCCCAGTGGTCGGAGAAGTAGT
TATTGACGTTTCTGTGAACGGGACACTTTACACCGGACAAGTTGTTTTAG
TACTGAAAAACTTGTTTGTTGAAATGATTATCGGTAAAGACTTTATGAAA
AAGCACAAATCAGTCACTCTTCATTTCGGAGGTTCTGAACCAGCTCTTCA
GTTTCCTTCCAAAGACACAGTCAGTTGTAATCTCACAGCTATGAAGATCG
AACCACCAACTCTCTTTGCCAACATACCAGCTAACGCTAAGCCAATTGCA
TGCAAGTCCAGAAAGTATACAATGCATGACAAAACTTACATTGCTCAAGA
AACCGAACGTTTGCTGAAGGACGGTATCATAGAACCGAGCACGTCACCTT
GGAGAGCCCAGGTACTCGTTGTTCCAGAAACTGAAACTCATCGTAAGAGA
CTCGTTGTCGATTACAGTCGAACAATCAACACATACACCGACCTTGACGC
TTATCCTCTACCACACAAAATTTCAGGCTATTCACTCTTTAACACGTTAG
ATCTCAAAAGCGCATATCATCAAATACCCCTTCGAGATGACGAAAAGAAA
TACACCGCTTTCGAGTCTGGAGGTCGACTTTATCAATTTACCCGAATGCC
CTATGGTGTGACAAATGGTGTTTCCGCCTTTCAAAGAACTATTGATAGTA
TTATTGAAAAGGAGAACATTCCTGCGACTTTTCCGTATGTAGACAATGTC
ACTGTCTGCGGTAAATCTCAACCTGAACACGACGATAATCTTAAGAAGTT
CTTAGATGCATCTGAGAAATATGGCATCACCTTCAACCATGAGAAAAGCA
TTCTATCGAGTTCCAGCATCAAGTTGCTTGGCTACGAAGTCCAGCATAAC
TCCATCAAACCTGACCCTGATCGACTCAAACCGCTAATGGAACTCCCAGC
TCCAATGGATACCGCCTCACAACGCAGGATTGTCGGTATGTTTGCTTACT
ACAGTCNGTACTCGTTGTTCCAGAAACTGAAACTCATCGTAAGAGACTCG
TTGTCGATTACAGTCGAACAATCAACACATACACCGACCTTGACGCTTAT
CCTCTACCACGCATAGACGAAACTGTCGACAAAATTTCAGGCTATTCACT
CTTTAGCACGTTAGATCTCAAAAGCGCATATCATCAAATACCCCTTCGAG
ATGACGAAAAGAAATACACCGCTTTCGAGTCTGGAGGTCGACTTTATCAA
TTTACCCGAATGCCCTATGGTGTGACAAATGGTGTTTCCGCCTTTCAAAG
AACTATTGATAGTATTATTGAAAAGGAGAACATTCCTGCGACTTTTCCGT
ATGTAGACAATGTCACTGTCTGCGGTAAATCTCAACCTGAACACGACGAT
AATCTTAAGAAGTTCTTAGATGCATCTGAGAAATATGGCATCACCTTCAA
CCATGAGAAAAGCATTCTATCGAGTTCCAGCATCAAGTTGCTTGGCTACG
AAGTCCAGCATAACTCCATCAAACCTGACCCTGATCGACTCAAACCGCTA
ATGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTACAGATTAATTTGCTTAATGAATTTTGC
TCTAAATGCGTCGACGTCGACGTCAACATCAAATTTACCCGTCCTGGAAC
GCTCCGTCCTCTTTGCTTAAGCTCGCTAATGCGAGCGCTACAACGGGATA
ATTTGGCGATCAATCAACCTAGCCTTAAAATCATCGAACCTACCCATGTC
ATCTTGGGAGCAAGTATTACCAAATGCACTTCACAGTATCCGCTCTCTGT
TATGCACATCCACCAATTCCACACCACATAAAAGATTGTTTAACTTAAAC
CGAAAATCCACAACAGGAAATTCCTTTCCTTCATGGTTATCTACACCAGG
TCCTGTGTATGTCAAGAAACATGTTCGACAATCAAAATATGACTCGTTAG
TTGAAGAAGCTGAGCTAATCGAAGCAAATCCAGAATATGCCTATGTGAGA
TTAAAGAGTGGCAACGAGACCACCGTTTCTATTAGAGACTTGGCACCCTT
TCCCAGAGAGGAAAGAAACTCATTCAATGATAACACTGAAATTGTTGAGG
AGCCGGATCAACTACAACCAGCTAGTGAAACGGTTATTGAACCTAGACGT
TCAACTCGTGAACGGAAGGCTCCAGAGCGATTTGATGATACAGATTTGTC
ATCACTTTAAACTGTTTTAAACTTGTTTCATTTCGTTATATACATAGGCT
TTATATCTTTACGGTTTTATATCTTAGGACTCTTTTGTATCTTAGGGGGG
AAGATTGTTATATTTTATCTTCTCGTTTTAGATGTATACAAGAAAAGCTT
ATTACAAGTAAACTAAAATATTACACAGCTTAAAATGACATTTCCTTTTT
CTCACACGAACTTCCTTTTAAAATGAGCGAGAACTTTATAGAAGTAACTA
TGCCGGCCATTCTGTAGCAATATTCAATCTATTGAATATTTAGTTCAATT
CAATCTTCGATCCTGATATTTAGTTCAATCCAATCCCTCATATTTGGTTC
AATCCCGATATTTGGTTCAATCTAATCCTTCATGTTCAAATTCAATCTTT
TTCATTCAAATTCAATGCTTCCTATTCAAATTCAATCAATCTTTATTCAA
ATTCAATCTTTTCCATTCAAATTCTATCCTTCATATTCAAATCAATCTTT
CAAATTCAACCTTCATTATTCAAATTCAATCTTTTTTCATTCAAACTTTT
CGAAATCTCATTCAATCTTCCTGGGTACGAGTGGATTCAAAAAGAGTTCA
TCTCCAGACTTCCGCCCAGCAGCGTACTTTATGTTTTTTGTTTTTGTTTT
TTTCGGAGATAATAATAACTGATGAATTTTATCTTCAGCGTGAATTTGCC
TGTATGCCACTAATCTTATTATCTCCTTAAGATTTAATAGCTTAAGACTC
GGTGTTCGTGTCAAAAACATATACCAACATGGCGGACAAAAACAAACATG
CTGCAGTTGCAAAATTACTTCAACAAGCAAGTGAAATTTTGGTGTCTGAT
GAATCAACAAATGGACAAATTCAAAGGGCAGCTATGCAAGTAGCATGTTA
AGTGATAAAATTCATCAGTTATTATCTCCGAAAAAAAAGAAGTCTAGAGA
CGAACTCTTTTTGAATCCACTCGTACCCAGGAAGATTTAATGAAATTTCG
AAAAGTTTGAATGAAAAAAGATTGAATTTGAAAGATTGAATTTAAATGAA
AAAGATTGAATTTGAATGAAAAAGATTGAATTTGAATGAAAAAAGATTGA
ATTTGAACATGAAGGATTGGATTGAACCAAATATCGGGATTGAACCAAAT
ATGAGGGATTGGATTGAACTAAATATCAGGATCGAAGATTGAATTGCTAC
AGAATGGCCGGCATAAGTAACCCGATGCACCTTGCTTGAGCCAAAAGTTA
CAAAAAAAGGACTTTAAATACCATACCAAATACCATTTTTGGATGTTTTT
ATCTAAAATTGCTGACTTGCGACAATGTTTTTACCAAACGACATAAAACT
GAATAAATCTCAATTTTAACACGAATGTCTCATTGATCCTAGTAAATTCA
GGTATTTTCTGTTCCAAGTGACAGCAAAGATGTTCCAAGACAAAGCGAAG
ATTGCATGTCAGAGAGAATGTCCAGTACCTTGTGAGATTGAATCTCTCAA
AGTGGAAACTGGCCAGTATGCGATCGGAACCAAATCCACGTACAAACGCT
TTGCTGCATTGAGAAATACTACTGAAGAGGAAGGCAAGAACTTTATCAGG
TGAGCTAGTTGGTTATGGAACATTCCTGAAACAGTCACAAGAGAAACATT
TCAGAAATCCATGGCAGCCTACCGACCTTAGTTGAGAAACACAATGAAAA
GGAAAGGGAATGCTTCGTCTAATGATGTTTTTAGATAAAGGGATAAAGCA
ATCTCGTACCTACTATGTACCAGAGTGTATCTCACGTTAATCGCTTCATA
GTACGGCAATGAATTTTAACAATCTCGTACCGAGAGACACTTGCAACACT
TTTTGGTTTTACTGATGGACGTGAGTTTTGTTTTCAGAATCATAAGCGTA
CAAAGGGACTGGAGTCGAGTTTGGAGAAAAAGATGGAATCTTCCGCATTC
TGGTTGCTTTAGTTTCCACGATCTCAAATAGTCGGTCAGTTAGACACAAT
TTTGGACGCCGGAGAGGGAGTCAGTCTGAAGGTGATTTTTCGGTATCCTT
AGGCATCCTAGTTATGGAAATAGTCGGGTGGACTGGTCAAATCGGTAGCT
TAATATGATTTTCAGGGACAAATGTAGGGTTTATTGGTAAAAAAATGTTG
TAAAATTTTAATGGTTTTTGAGGGTCGGGCAAACTTGTTCAGACCATAAC
TTTTTACTTCAAACTTGGAGGAGAACTTCATCATTTCGGTGACAAGTAAA
ATCAGTCTCTTCCATATATCCATATAACCTGCAACTTGTTTCTTCTTTCA
GTAACAATGTCGTAGGGCTGACAGTGTCTTACGATGATGTGATGTATATC
CAAGAAAAACTCACTCCCTCAGTCGATTGGGAAATATTACTCGGTAAGAC
AATTTACTCATGCAAGAAAGCTACCAATCTGCCCAAGACAGCTCACGTTT
TGAGAAACGATGATTTTTTCGATGATTGAAAAACAACAGTCAATGCCCCG
CCATTTATGGAGAGAGTCGACAAGGCAGTTAAATGCTGCTACGATGAGCA
CGAATCCATTAGTGGATACCAGCAGCCTACAAATAAGTATAATAGAAGTT
CATTTTCATGATATCGTGAATAAAACGCGGCCATACTTTTAAACTATATA
ACTGGTCAATGCACCTCATCTTTTTACGTATTCTTTTTTACAGCCACCAT
TGGAGGAAGTTTGGGATTATGTTTGGGTTGCAGTTTCATTACAATTGTCG
AGTTCTTGGTTTTTCTTCTCATTGATCTTCCGTTCGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007607TCONS_00007607Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:161195..167732 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.18	0	0	0.29	0	0	0.68	3.99	2.96	0.1	0	0.39	1.71	6.19	23.64	0	0.48	0.2	0.71	0	0.66	0	0	0	0