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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007607 ID=TCONS_00007607|Name=TCONS_00007607|organism=Clytia hemisphaerica|type=transcript|length=416bp
AAGGTATTCCAGAATGTAGGATGGAGCAATACGATTGCTTTTCGAAAGTG
ACAGCAAAGATGTTCCAAGACAAAGCGAAGATTGCATGTCAGAGAGAATG
TCCAGTACCTTGTGAGATTGAATCTCTCAAAGTGGAAACTGGCCAGTATG
CGATCGGAACCAAATCCACGTACAAACGCTTTGCTGCATTGAGAAATACT
ACTGAAGAGGAAGGCAAGAACTTTATCAGTAACAATGTCGTAGGGCTGAC
AGTGTCTTACGATGATGTGATGTATATCCAAGAAAAACTCACTCCCTCAG
TCGATTGGGAAATATTACTCGCCACCATTGGAGGAAGTTTGGGATTATGT
TTGGGTTGCAGTTTCATTACAATTGTCGAGTTCTTGGTTTTTCTTCTCAT
TGATCTTCCGTTCGGT Run BLAST on NCBI protein sequence of TCONS_00007607-protein >TCONS_00007607-protein ID=TCONS_00007607-protein|Name=TCONS_00007607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
GIPECRMEQYDCFSKVTAKMFQDKAKIACQRECPVPCEIESLKVETGQYA
IGTKSTYKRFAALRNTTEEEGKNFISNNVVGLTVSYDDVMYIQEKLTPSV
DWEILLATIGGSLGLCLGCSFITIVEFLVFLLIDLPFG Run BLAST on NCBI transcript from alignment at sc0000078:161195..167732- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007607 ID=TCONS_00007607|Name=TCONS_00007607|organism=Clytia hemisphaerica|type=transcript|length=6538bp|location=Sequence derived from alignment at sc0000078:161195..167732- (Clytia hemisphaerica)
AAGGTATTCCAGAATGTAGGATGGAGCAATACGATTGCTTTTCGAAAGGT
AAGTGCAAACAGTGCTTTTCACGTAAGGAGTAAACAGCTTGTTATATTTT
ATCTTCTCGTTTTAGATGTATACAAGAAAAGCTTATTACAAGTAAACTAA
AATATTACAATTTTCTTGTTGCATCAATTGGTCGATCACCACACCATGGA
CAAGCACTTACGTCCAAATCGTTTTGAATGCGAGCCAAATGCTGTAAATG
CAGAAAAACAATGGAGACACTGGTACAGAACATATGAAAACTTCATAAAC
TCTATAACTTTCCCAGAAGGGACAACAGATCAAGCACGTCAAGAACAAAA
ACTCAGTACCCTCATCAATTACGTTTCTCCATCAGTATATGAATTTATTG
CCGAAGCAGAAAGCTACACCAGAGCGATAGAAATTCTTCGTCAACTTTAC
GTTAAGCCGGTCAATGTTATGTATAACCGTCATGTTCTTATCACCCATCG
TCAAAATGATACAGAAACAGTCGACCAGTACCTTCAAGAACTTGAGAGAC
TTAGTAAGAACTGTAACTTTGCTGCTGTAACAGCAGAGAATTACCGTCAA
GAACACGTCAGAGACGCCTTCATAAATGGTTTACGTTCTTCTGTTATTCG
TCAACGTTTGCTAGAAAGTCCTACACTAACCCTTCAACAAGCCTTCCAAC
AAGCACGTACATTAGAGCTCGCACAAAAACATTCTGACAATTTTCAATCC
TCGCCAAGCATGGTCGCTGGTGTCGCTGGCAACTCAATCGATATTCCACC
AGATGCTACCGTTGCTGGAGTTGGAAAAGGAAGCACTTCAGGAACTGAGA
AACAAAAGTGCTATTTCTGTGGTAATGACCGTCATCCTCGCAGCAAATGC
CCTGCAAAAGAAAGTACGTGCAATAAGTGTTCGAAAATTGGACATTGGGA
GAGAGTCTGTCGTTCAACCAAGACAAGTGCTAATCTAGGAGCTGCATCCT
TACCACCTGCTTCAAACCCATCACTTTGTGCCACTCAACAAAACAAAGCC
ACAAATAGTAATGACTCAACCATGACTATAACTTATGTGAATAATCGATC
TTTGAATACGCTCGTTGATTTGGGAAGCGATCTAACCTTCATCAGTGAAA
AAGTAGCAAAGAAATTGAAACTCTTTATACTACCGGCACCTGCAAAAACC
GTTACCCTTGTAGATCGTTCTCAGTCATGCCCAGTGGTCGGAGAAGTAGT
TATTGACGTTTCTGTGAACGGGACACTTTACACCGGACAAGTTGTTTTAG
TACTGAAAAACTTGTTTGTTGAAATGATTATCGGTAAAGACTTTATGAAA
AAGCACAAATCAGTCACTCTTCATTTCGGAGGTTCTGAACCAGCTCTTCA
GTTTCCTTCCAAAGACACAGTCAGTTGTAATCTCACAGCTATGAAGATCG
AACCACCAACTCTCTTTGCCAACATACCAGCTAACGCTAAGCCAATTGCA
TGCAAGTCCAGAAAGTATACAATGCATGACAAAACTTACATTGCTCAAGA
AACCGAACGTTTGCTGAAGGACGGTATCATAGAACCGAGCACGTCACCTT
GGAGAGCCCAGGTACTCGTTGTTCCAGAAACTGAAACTCATCGTAAGAGA
CTCGTTGTCGATTACAGTCGAACAATCAACACATACACCGACCTTGACGC
TTATCCTCTACCACACAAAATTTCAGGCTATTCACTCTTTAACACGTTAG
ATCTCAAAAGCGCATATCATCAAATACCCCTTCGAGATGACGAAAAGAAA
TACACCGCTTTCGAGTCTGGAGGTCGACTTTATCAATTTACCCGAATGCC
CTATGGTGTGACAAATGGTGTTTCCGCCTTTCAAAGAACTATTGATAGTA
TTATTGAAAAGGAGAACATTCCTGCGACTTTTCCGTATGTAGACAATGTC
ACTGTCTGCGGTAAATCTCAACCTGAACACGACGATAATCTTAAGAAGTT
CTTAGATGCATCTGAGAAATATGGCATCACCTTCAACCATGAGAAAAGCA
TTCTATCGAGTTCCAGCATCAAGTTGCTTGGCTACGAAGTCCAGCATAAC
TCCATCAAACCTGACCCTGATCGACTCAAACCGCTAATGGAACTCCCAGC
TCCAATGGATACCGCCTCACAACGCAGGATTGTCGGTATGTTTGCTTACT
ACAGTCNGTACTCGTTGTTCCAGAAACTGAAACTCATCGTAAGAGACTCG
TTGTCGATTACAGTCGAACAATCAACACATACACCGACCTTGACGCTTAT
CCTCTACCACGCATAGACGAAACTGTCGACAAAATTTCAGGCTATTCACT
CTTTAGCACGTTAGATCTCAAAAGCGCATATCATCAAATACCCCTTCGAG
ATGACGAAAAGAAATACACCGCTTTCGAGTCTGGAGGTCGACTTTATCAA
TTTACCCGAATGCCCTATGGTGTGACAAATGGTGTTTCCGCCTTTCAAAG
AACTATTGATAGTATTATTGAAAAGGAGAACATTCCTGCGACTTTTCCGT
ATGTAGACAATGTCACTGTCTGCGGTAAATCTCAACCTGAACACGACGAT
AATCTTAAGAAGTTCTTAGATGCATCTGAGAAATATGGCATCACCTTCAA
CCATGAGAAAAGCATTCTATCGAGTTCCAGCATCAAGTTGCTTGGCTACG
AAGTCCAGCATAACTCCATCAAACCTGACCCTGATCGACTCAAACCGCTA
ATGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTACAGATTAATTTGCTTAATGAATTTTGC
TCTAAATGCGTCGACGTCGACGTCAACATCAAATTTACCCGTCCTGGAAC
GCTCCGTCCTCTTTGCTTAAGCTCGCTAATGCGAGCGCTACAACGGGATA
ATTTGGCGATCAATCAACCTAGCCTTAAAATCATCGAACCTACCCATGTC
ATCTTGGGAGCAAGTATTACCAAATGCACTTCACAGTATCCGCTCTCTGT
TATGCACATCCACCAATTCCACACCACATAAAAGATTGTTTAACTTAAAC
CGAAAATCCACAACAGGAAATTCCTTTCCTTCATGGTTATCTACACCAGG
TCCTGTGTATGTCAAGAAACATGTTCGACAATCAAAATATGACTCGTTAG
TTGAAGAAGCTGAGCTAATCGAAGCAAATCCAGAATATGCCTATGTGAGA
TTAAAGAGTGGCAACGAGACCACCGTTTCTATTAGAGACTTGGCACCCTT
TCCCAGAGAGGAAAGAAACTCATTCAATGATAACACTGAAATTGTTGAGG
AGCCGGATCAACTACAACCAGCTAGTGAAACGGTTATTGAACCTAGACGT
TCAACTCGTGAACGGAAGGCTCCAGAGCGATTTGATGATACAGATTTGTC
ATCACTTTAAACTGTTTTAAACTTGTTTCATTTCGTTATATACATAGGCT
TTATATCTTTACGGTTTTATATCTTAGGACTCTTTTGTATCTTAGGGGGG
AAGATTGTTATATTTTATCTTCTCGTTTTAGATGTATACAAGAAAAGCTT
ATTACAAGTAAACTAAAATATTACACAGCTTAAAATGACATTTCCTTTTT
CTCACACGAACTTCCTTTTAAAATGAGCGAGAACTTTATAGAAGTAACTA
TGCCGGCCATTCTGTAGCAATATTCAATCTATTGAATATTTAGTTCAATT
CAATCTTCGATCCTGATATTTAGTTCAATCCAATCCCTCATATTTGGTTC
AATCCCGATATTTGGTTCAATCTAATCCTTCATGTTCAAATTCAATCTTT
TTCATTCAAATTCAATGCTTCCTATTCAAATTCAATCAATCTTTATTCAA
ATTCAATCTTTTCCATTCAAATTCTATCCTTCATATTCAAATCAATCTTT
CAAATTCAACCTTCATTATTCAAATTCAATCTTTTTTCATTCAAACTTTT
CGAAATCTCATTCAATCTTCCTGGGTACGAGTGGATTCAAAAAGAGTTCA
TCTCCAGACTTCCGCCCAGCAGCGTACTTTATGTTTTTTGTTTTTGTTTT
TTTCGGAGATAATAATAACTGATGAATTTTATCTTCAGCGTGAATTTGCC
TGTATGCCACTAATCTTATTATCTCCTTAAGATTTAATAGCTTAAGACTC
GGTGTTCGTGTCAAAAACATATACCAACATGGCGGACAAAAACAAACATG
CTGCAGTTGCAAAATTACTTCAACAAGCAAGTGAAATTTTGGTGTCTGAT
GAATCAACAAATGGACAAATTCAAAGGGCAGCTATGCAAGTAGCATGTTA
AGTGATAAAATTCATCAGTTATTATCTCCGAAAAAAAAGAAGTCTAGAGA
CGAACTCTTTTTGAATCCACTCGTACCCAGGAAGATTTAATGAAATTTCG
AAAAGTTTGAATGAAAAAAGATTGAATTTGAAAGATTGAATTTAAATGAA
AAAGATTGAATTTGAATGAAAAAGATTGAATTTGAATGAAAAAAGATTGA
ATTTGAACATGAAGGATTGGATTGAACCAAATATCGGGATTGAACCAAAT
ATGAGGGATTGGATTGAACTAAATATCAGGATCGAAGATTGAATTGCTAC
AGAATGGCCGGCATAAGTAACCCGATGCACCTTGCTTGAGCCAAAAGTTA
CAAAAAAAGGACTTTAAATACCATACCAAATACCATTTTTGGATGTTTTT
ATCTAAAATTGCTGACTTGCGACAATGTTTTTACCAAACGACATAAAACT
GAATAAATCTCAATTTTAACACGAATGTCTCATTGATCCTAGTAAATTCA
GGTATTTTCTGTTCCAAGTGACAGCAAAGATGTTCCAAGACAAAGCGAAG
ATTGCATGTCAGAGAGAATGTCCAGTACCTTGTGAGATTGAATCTCTCAA
AGTGGAAACTGGCCAGTATGCGATCGGAACCAAATCCACGTACAAACGCT
TTGCTGCATTGAGAAATACTACTGAAGAGGAAGGCAAGAACTTTATCAGG
TGAGCTAGTTGGTTATGGAACATTCCTGAAACAGTCACAAGAGAAACATT
TCAGAAATCCATGGCAGCCTACCGACCTTAGTTGAGAAACACAATGAAAA
GGAAAGGGAATGCTTCGTCTAATGATGTTTTTAGATAAAGGGATAAAGCA
ATCTCGTACCTACTATGTACCAGAGTGTATCTCACGTTAATCGCTTCATA
GTACGGCAATGAATTTTAACAATCTCGTACCGAGAGACACTTGCAACACT
TTTTGGTTTTACTGATGGACGTGAGTTTTGTTTTCAGAATCATAAGCGTA
CAAAGGGACTGGAGTCGAGTTTGGAGAAAAAGATGGAATCTTCCGCATTC
TGGTTGCTTTAGTTTCCACGATCTCAAATAGTCGGTCAGTTAGACACAAT
TTTGGACGCCGGAGAGGGAGTCAGTCTGAAGGTGATTTTTCGGTATCCTT
AGGCATCCTAGTTATGGAAATAGTCGGGTGGACTGGTCAAATCGGTAGCT
TAATATGATTTTCAGGGACAAATGTAGGGTTTATTGGTAAAAAAATGTTG
TAAAATTTTAATGGTTTTTGAGGGTCGGGCAAACTTGTTCAGACCATAAC
TTTTTACTTCAAACTTGGAGGAGAACTTCATCATTTCGGTGACAAGTAAA
ATCAGTCTCTTCCATATATCCATATAACCTGCAACTTGTTTCTTCTTTCA
GTAACAATGTCGTAGGGCTGACAGTGTCTTACGATGATGTGATGTATATC
CAAGAAAAACTCACTCCCTCAGTCGATTGGGAAATATTACTCGGTAAGAC
AATTTACTCATGCAAGAAAGCTACCAATCTGCCCAAGACAGCTCACGTTT
TGAGAAACGATGATTTTTTCGATGATTGAAAAACAACAGTCAATGCCCCG
CCATTTATGGAGAGAGTCGACAAGGCAGTTAAATGCTGCTACGATGAGCA
CGAATCCATTAGTGGATACCAGCAGCCTACAAATAAGTATAATAGAAGTT
CATTTTCATGATATCGTGAATAAAACGCGGCCATACTTTTAAACTATATA
ACTGGTCAATGCACCTCATCTTTTTACGTATTCTTTTTTACAGCCACCAT
TGGAGGAAGTTTGGGATTATGTTTGGGTTGCAGTTTCATTACAATTGTCG
AGTTCTTGGTTTTTCTTCTCATTGATCTTCCGTTCGGT Coding sequence (CDS) from alignment at sc0000078:161195..167732- >TCONS_00007607 ID=TCONS_00007607|Name=TCONS_00007607|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000078:161195..167732- (Clytia hemisphaerica)
GGTATTCCAGAATGTAGGATGGAGCAATACGATTGCTTTTCGAAAGTGAC
AGCAAAGATGTTCCAAGACAAAGCGAAGATTGCATGTCAGAGAGAATGTC
CAGTACCTTGTGAGATTGAATCTCTCAAAGTGGAAACTGGCCAGTATGCG
ATCGGAACCAAATCCACGTACAAACGCTTTGCTGCATTGAGAAATACTAC
TGAAGAGGAAGGCAAGAACTTTATCAGTAACAATGTCGTAGGGCTGACAG
TGTCTTACGATGATGTGATGTATATCCAAGAAAAACTCACTCCCTCAGTC
GATTGGGAAATATTACTCGCCACCATTGGAGGAAGTTTGGGATTATGTTT
GGGTTGCAGTTTCATTACAATTGTCGAGTTCTTGGTTTTTCTTCTCATTG
ATCTTCCGTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007607-exon-sc0000078-1575043694:167685..167732 | TCONS_00007607-exon-sc0000078-1575043694:167685..167732 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1575043694:162384..162564 | TCONS_00007607-exon-sc0000078-1575043694:162384..162564 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1575043694:161590..161681 | TCONS_00007607-exon-sc0000078-1575043694:161590..161681 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1575043694:161195..161289 | TCONS_00007607-exon-sc0000078-1575043694:161195..161289 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1510915933:167685..167732 | TCONS_00007607-exon-sc0000078-1510915933:167685..167732 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1510915933:162384..162564 | TCONS_00007607-exon-sc0000078-1510915933:162384..162564 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1510915933:161590..161681 | TCONS_00007607-exon-sc0000078-1510915933:161590..161681 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1510915933:161195..161289 | TCONS_00007607-exon-sc0000078-1510915933:161195..161289 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1491911889:167685..167732 | TCONS_00007607-exon-sc0000078-1491911889:167685..167732 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1491911889:162384..162564 | TCONS_00007607-exon-sc0000078-1491911889:162384..162564 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1491911889:161590..161681 | TCONS_00007607-exon-sc0000078-1491911889:161590..161681 | Clytia hemisphaerica | exon |
| TCONS_00007607-exon-sc0000078-1491911889:161195..161289 | TCONS_00007607-exon-sc0000078-1491911889:161195..161289 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:161195..167732 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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