XLOC_004359 (gene) - C. hemisphaerica

Overview
NameXLOC_004359
Unique NameXLOC_004359
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000079:73483..82961+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004359 ID=XLOC_004359|Name=XLOC_004359|organism=Clytia hemisphaerica|type=gene|length=9479bp|location=Sequence derived from alignment at sc0000079:73483..82961+ (Clytia hemisphaerica)
AAACCAGGCCACTTCACCATGGTTTCAATAACAACACTTCATCGAAAGAT
GAGCCAAGAAAAGaagtttcaaagcaaaaaaaacaaaatcaaaaacagat
CGTCAGCACAAATAGTACTGTACTACAGAAGAAAAGCAAGAGAGACAATA
CATTTACTACAAGAGAATCATGGATAAATTACCTTGGATTTTTGTCGTTT
GTTTTGGGTGTCTTTCTGTNAGTATTACAAGAGGATGGATAAATTACCTT
GGATTTTTGTCGTTTGTTTTGGGTGTCTTtctgtttataattttttacag
AATCGAGAAGTCAATTTACGAGTTTTGCAATTGCACGAACATCAAGATCA
AGGTATCATTATATTTCAAATAACATTTCATTATCAAGTTTCCATGAGAA
CGGACCATAAGTCTGAAACatgttagactggagtcgtttataatgcgtgt
aatacagaagtataggcgttatatgataatacgattattgttacgggatt
tagtttgtataaacgactgtaAGAATCCGGTGTCCCGGCCTTAGAGAATC
TCCGGCTAGCTACGTAGAAACTTGCGTAgaagaaaaacaatttatcaagc
aacaaaaaactcttaaaacaaaatcaactcaaatgaaaaatttttaacgc
gcacaaatccacacacattgttttttttcaagaatttcatTTTGAGTGGT
AAAAAGTTATAATTGTAATATTGACgcttcttttgtttggagttagtgca
caaaggtttctagacgactaaaattattccctccattactttttgcttta
tttctactatgcctgaattagtcgtctagttTGCTGGACTAGAAACATGT
CGtgaaaaatcaaataataacAGCCGCGTTCTTTTTTTTGTGTCCAACAC
ATTATCAAGATATATTACAAGATTTTAAACGTTTTGCGTCACCAAAATCT
GGCATTTTATCAGATCTGTGGATATTGGGTTGTGCTAAAGCTCGTTTGCA
TTTTTCTTTAGGTGCCAATCGATACCGTAGAGATGCCTCAACTAAAGATG
GTGATGACGAagacttgaaaaggttcatGTTGAACTTTCCGGCTGAgaag
atttgtaaaaaattcATGTATGTTTGTGCAAAAGGTAAAAATTGCTGAAT
CAACGAAATGTTCTAAatgcttttttttaagaatatcttctataagaata
ccagggtgaaaattggccaaatcgtaagaataccctaagaataccctcta
tggtgaatttcacagaatttgataagaatttagtcattttgtatttggtt
aacataaaaaactgcttcctttgttagagatgGATCGAAACTTTGAGGAA
GGATGTTCataaagtccaaaactctcaaattgatcattttttatgtttgt
aaaaaagttaagtctaaaaaagtaagaatacgttatgAATATCGCCatga
atatttcaccctcaattttggcactttcttaagaatacttgaccctatAA
AGATGCGAAGAAAAAGTTTGTAAGGATCACCCTAACCCATAAAAAAAAGT
Atgaagaaaaatcgaaaaatcaaaagattttcatcaagttaaaggtttta
tttaagagcaatatcgtttgcttactcatcaattttgatttttacaagct
ttttcacattggattggaGAAGGGGGGGTTTCAcgtttggcggaggagcg
gaatcggcccttttttcggacggagtggcggaatttagtgaaaatttaga
tggaattacggaaattgggttctctgacggagacggaaaattagacaatt
ttagtgcggaaaaacggaatttagcaaaaaaaattgcggaatttcggaat
tggtaaaagatattccaaatttgcggaattttcgacaaaattattgaatt
tcaaaggaattttcggtgacggaattttNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCCCTGGagacggatgtggagcaaggtGATCAGAAAAagggaaagaa
aatttctttgtatatatcagcataatataacaataggtactgataggtag
acactgtcctgaaatgaaatatgtgtctgatatgaaacgagattacttat
gtaaaaataaaacctttaatgctAAAGAGctaattttcttttattcatct
aCAGATAAGTGCAAACAAGAGGAGACAGcggtcatcaaaacaaaagagtc
CAACAAAGGGGGGAAACCTCAAGAGTGCATTCGTGGTCCTCCAGTAAGTA
TACCAAATTATTCTGGTAGAGTTAGTTCACAAAAGGCTATCttactttga
aaaagttttgaaatttggaaCAGATGTTTCTTTTGGGTCCTAGAACCTCT
AATCGAATCGACAATGTTAGTGGCATTTTTATGATGATAACGTCAATTTT
CAGTACATACCTCTTGcaaacaattttcttttgcaTAGCTGATATAATAC
CTAAATAGCTTCCTAGAAAATTTTGTTGACACTtataaactttttgactt
ttaatataatcttaTTAACAACATGTATGCCAAATTTTACAACTATATAC
CAATTAGATCAGGTTTAGACAGGGAGGGGGATCTGCTTTGCTAATTTTAA
AAGCTGAATTTTCCAGTTTTTTCTCTAACTTCAGTGTAGCttctatttga
aaaatgtaaacttTAATGAGGCTTAATAGTTTTCTTTCTCTTTGACATTT
AAAAGAAGTTCAACACAATTGATGTTAAACTGTAATTCCAATAGTTTTCT
TTCTTTAGAGGAAGGGGGGGGGCTCCACTTTCTAGCTCATGGCACAAGCC
CTGATCATGTCAAAATGATTTGACCATCTCTAATGTCTAATTTGCCTTTG
TGTCTATGgcatagatatcttatataaaacactagatagagctactatgt
atttctcaagaaaatgcacGTACGGCAGGCGAAGCAAAATAATCcaccat
ctttgctgaaagttgGTCAgagttcggtaccggcaatttgttaAACCAAG
CAAAAAAACTGAATAGCGATAAGCGACGAGGCGAAAGATAGGCTTGATCG
ATCAAATTACCGGCACCGAGCTATAGTCTacttatcaaagatggcggatt
atttAGATTCAAATAGggacagagtagctctatcaaGTGTTTTAAAGATA
TCTGTGGTTTATGGTGTCAAAACCGTCTTGTTATTTAAAGATCATACTTC
gattcttttttcaataaaggGACCACCAGGACCTGGACTTGAATTTCCAA
AACTTGTTAAAAGCACACTGCATAATGATGAAGTAAACATTTCAAActcc
aaaacattcgaatgtacaTTTTATGGTAACCCCATACCTACAGTAACATG
GAGAAGCCCTGCAAAGAATTTCAGTATCTCCTCAACAATTGATAAACAAA
AGCTTGAAGTTACAAGCCGTTTTGTGATCTCGAACGTTTCCTGGGATGAA
CAAGGTCCGATAGTATGTCATGCGAAGAGTTTACTCGGTGAAGCAGGAGA
TGCAGGAAACCTTACTGTATTAAGTAAGTGATTGTTCTTTTATCTGGAAA
TCTtataagtaaaagaaaagaTATATAAGAAAGGATTGCCAAAAATGGAG
TTTCCAGCATCAAAGGATAAAAGTTAATTTGCTTCTTCTTCActgttcat
cttcattttcaacaaTGTGTTATTTGCCCAGGGGgtcactcgattcaaaa
acgacccaaaattaggcctttgaaatcggaacCTCACATTGCAAAGAAAA
TTTAACCAGATTTGAGTAAAGTTGgccgaaaaatcgacccttacagtgca
ccactttctaaaacatttttgaccaattttagggaaaatggtcagatttt
caaaattttacacatctttgctcatttcgagCCTTTCGAGTTCATTTCAA
AGGGACCCTTAAGGGCCAcacgtacggtaggtcgtttaccttgagtgccc
cccccacCCCGGTATTATTGGAATTAATACTATATGGTTGAAAAATAACG
AGCTAAACGGCAAGAATTAGTGCACACTAAAAGCAAATATGccataccca
gctggcacacaacgttttttcgacgtttatctaacgttcacaacgtccat
ataacgttagatgaacgttgaaacaacattgtgtgctagctgggtaAGCT
CAGCATTAAATTAGCTTAGGTTATTAGAAGGTCATATAGAGtagaaattt
tctaatttaaattCTCATAAAGCTATTTATTTATGTGGCAACGCAGGCAA
AAAAGCCTTCCTGAAAAGCTTAAATTGCTGGCCTTTCTCAAATGATACtt
ctattgggcttttccagaaaaaaatcgtgcaccccctgttgaggaggtcc
atttccgttccaaggggctAAGGTTTGAAAtacagtggaattccataagg
gtagacgaaaatccgtcaaaaataagcggaattccaagggggtaatgatt
gaaaatttgtaaaaattcggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcc
aagggggtaggtcacaaaaggttggacctcctcaacagggggtgcacggt
ttttttctggaaaagcccatttggCCATAACCACGATGTAATTATTACAA
CTCACTCTCCTTTCCAGCAAAACCAGTCATATTAAATCATCAAAACTTGG
TCTTCACACCAGAGGGAATCACTTTCGATTTTCCCAAATGCAAAGTTCGA
TCAAACCCACCAGCAAAAATCACTTGGAAACGCATTTTCTGGTCAATGCC
AGCAGGCCGATTTTCAACCAAACGAAATAATTTACTAATTAACAATGTCC
AGTTTAAAGATGAAGGATTTTATGTTTGTGAGGCGGAAAATTTTCTAGGT
AAGATATCTTTGTGATTGAATACGAAAATTTCCGGCGGTACTATTCATCA
TGTCATCAAATCGATGAAGCAGGTTGTTGATCAAAGTACAGAGGCTAGCA
TGTacacgtttctttataagaacaaactataaaagagcataaggcttcgg
tgtcaaaaatattaagaacaaattaagaacattttatggctttgtgtact
caaaaacaaaaataatcacaaaatggtgaaaaaactctgttaagaacatc
ccaaagacttcaaaatttttggatgttcttattaaaaaaacgtgtatgca
acTTTTTTTGATGTATCTTTCGTACTGAGATTTCTTTCTCTTAGGAAAAG
ACAAAGCCACGACACAGTTGAAAGTTAGTGCGCTTGAGATTCACGAATCC
TCACCACAATCTATCACAATAAACCATGGTGAAACTGCCAACATTAATTG
TTCAGCATTTGgaaatgccaaaaaaatgaATGGAAGAATCTCATCAAAGA
CTGGTTCTAAAGTGCAATATTTTGTTGAACGTGCTCCTTCAGGCAATTCG
ATTCTGTTACAAGCAGTGGTAAATCAAGAAGGAATTTATTCTtgtgaaat
tcaaaatgaagctggAAAGAAAGTGCGAACGTCAGTCTTTGTTGAGATAC
GGCGTAAGTTTGTCAGTAGTATGTTATGTACGCTATGAAGTTTAACTTTT
AAGTAAATTCATATaagcaactttggtaggatttgttggcttcaaatcct
ataagggagattcgattctagcccttcgatCTTATCCTTCATtggttttg
ccttttttaactCTATCTTCTGAATCCAAATACATTCTTCCCTTACCCCA
TTCTTTTTATATAGAAATCTTACACTAgacataactttcattaaggtgcc
accgcagcaaaacgtacacatagagttgaatttgctttcaaaaggaaaaa
ttctttcaaatgctaacaaatgtttcaagggagtgatttacagtctactt
agagtgacatccgtgccttttcttacacttttttataagagcaatttcat
aagaatacgaggctaaaatttggccaaaacctaagaacaaattaagaaga
atctaagccttagatttcagaaattactgagaaatACAGGTTTCCATTTT
TATTAATATTGACATTGAAGCCTGAAAAACTTATATAAAACTAAGAGCAG
CTCAGCCTAGtatacacaatagacagatccaggcttttaggccttactct
tggtctataggcactgctataggcggccactagtgactcccaccgggaat
tgcttattaataggtttaaacataatagacaacattcacaaaagatgttt
atcaatagagattttaaataaaagaatgtttaaaacacagctgaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
actctctattgtttcattaaaacctcagtgcgcatgcgatttatctggag
aatttcaatattcaaaacaagagcagtgctcatagcccgaagagtaggag
ttttacgctcgaaacgaaggaagatatgacgaaGCCTaagcccagccaga
atcatatgacttgctggtttttcttataaagagtGTTTATCTGAagtaga
caggcagctgacgacatcaaaaaaagtgaataagtgaaaattcgagggac
aaatattgagtacttattttgaaatctttatagtttagagagtcagaaaa
atttactCGGCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAATTTTTAGGATCAGTAGAtatatgggaacaagaaaa
atcaactcgacgtttgtcccaaagtcgtccagattttagatgtcgtcagc
tgcctgtctaaagatactgctcttcatatgttattttactaatgtagaCG
TTTAGCAGCATATAACTGTTCAAATACTTTGAGTAGGGTAACATTTTCat
taacctatgaagagcgcttaataactacttgtggtataaaaagggaattt
cccagaaaagggaatttccttagattcattaactctccagggataagaaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttcaaaatg
agtaatcagatcaaaataactctggaaaagtctttttgatgatgataaaa
caatagagagaccgtaagaaaagaatgctaccgttaagcggaactaaaat
actgaaaaacgcagTTTTGCGGTGGCAAAAACGGATTTTTGTCTCATAAA
AAATCACAACCCTTTCACACAGACCCGATATGATCTTTTCAGCCATTGAG
GGTAAAAATAACAGGCCAAAACTCAATGGGCATTGATATTCCAATCCATG
TTTTTTATGACCTTAaaggatttgaattccattatttacgagccagaaaa
ttcatcagtggggatggaaaaatgtCTTATAtaatttgcttatctgattc
tttctttatgatgataaCAGTTAGAGTATAATTTGCCACTGGGGAcgaaa
tattttcattaatttttccagtggaaagcggtcccactgggtctgtgcga
agggggggggggtaaaataGGTAAAAGGGTAAAATCATATCAAGTCAATA
TCACTTTCCATCTTCTATCTACAGAAGTTCCTACTACTATGACATcatca
acaaaaatttcaactGTCAAATGTATGAACTACGAATTCAGATGTCACCG
TAGCAATCGATGTATCCACAGATCATGGAAGTGTGATGGCGCGCTTGACT
GTCCAAATGGTGAGGACGAAGACCCTGCGATTTGCTAGGACTTGAGACTA
CTACTAGGACTTTAGGATTTGAGAGGACTTTTTGAGGATGTTAATCTATG
TAAAAGGTCTTGAATGCGTAATGTATTGatcatttcttataaaaacgaac
GAAATGACCAAATGATTATTGATTTAAATCAGATGAAAACATTCCAGAGA
TTCATCACCAGTGAGAGTGTTGCAATTCAATccgttttcattttttagtc
ACATACAcactttttctataagaatggtgttaatccatttcatcatggat
attcttaacttttgtgagaaaatctttctaaaatattcttacagtattct
taagttaggatcctaattcagactagatttaacattaaGCATTAAAATgg
cttttttgtgaaaggagtgaacttacttgggggtaattgacactttataa
ttgaaaatgctctagaaatggcattcttagctttagtaacaaaatttcat
gatggtgatattcttagcatattcttaaaattttttggccatttttatca
tggacattcttataaagtgtattcttataaaaaaagcgtgtaaaattatt
tctttccaaaataaaaagttaatcaATAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007686TCONS_00007686Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:73483..82961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51	1.77	1.5	1.15	0.2	0.17	0.91	1.1	8.32	7.31	9.6	8.31	29.65	27.13	95.12	99.62	22.84	24.58	20.37	20.88	21.63	19.56	13.26	13.21	13.39	12.18	3.1	7.04	46.03	54.75