TCONS_00007686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007686
Unique NameTCONS_00007686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007686 ID=TCONS_00007686|Name=TCONS_00007686|organism=Clytia hemisphaerica|type=transcript|length=2163bp
AAACCAGGCCACTTCACCATGGTTTCAATAACAACACTTCATCGAAAGAT
GAGCCAAGAAAAGaagtttcaaagcaaaaaaaacaaaatcaaaaacagat
CGTCAGCACAAATAGTACTGTACTACAGAAGAAAAGCAAGAGAGACAATA
CATTTACTACAAGAGAATCATGGATAAATTACCTTGGATTTTTGTCGTTT
GTTTTGGGTGTCTTTCTGTNAGTATTACAAGAGGATGGATAAATTACCTT
GGATTTTTGTCGTTTGTTTTGGGTGTCTTtctgtttataattttttacag
AATCGAGAAGTCAATTTACGAGTTTTGCAATTGCACGAACATCAAGATCA
AGGTGCCAATCGATACCGTAGAGATGCCTCAACTAAAGATGGTGATGACG
AagacttgaaaaggttcatGTTGAACTTTCCGGCTGAgaagatttgtaaa
aaattcATGTATGTTTGTGCAAAAGATAAGTGCAAACAAGAGGAGACAGc
ggtcatcaaaacaaaagagtcCAACAAAGGGGGGAAACCTCAAGAGTGCA
TTCGTGGTCCTCCAgGACCACCAGGACCTGGACTTGAATTTCCAAAACTT
GTTAAAAGCACACTGCATAATGATGAAGTAAACATTTCAAActccaaaac
attcgaatgtacaTTTTATGGTAACCCCATACCTACAGTAACATGGAGAA
GCCCTGCAAAGAATTTCAGTATCTCCTCAACAATTGATAAACAAAAGCTT
GAAGTTACAAGCCGTTTTGTGATCTCGAACGTTTCCTGGGATGAACAAGG
TCCGATAGTATGTCATGCGAAGAGTTTACTCGGTGAAGCAGGAGATGCAG
GAAACCTTACTGTATTAACAAAACCAGTCATATTAAATCATCAAAACTTG
GTCTTCACACCAGAGGGAATCACTTTCGATTTTCCCAAATGCAAAGTTCG
ATCAAACCCACCAGCAAAAATCACTTGGAAACGCATTTTCTGGTCAATGC
CAGCAGGCCGATTTTCAACCAAACGAAATAATTTACTAATTAACAATGTC
CAGTTTAAAGATGAAGGATTTTATGTTTGTGAGGCGGAAAATTTTCTAGG
AAAAGACAAAGCCACGACACAGTTGAAAGTTAGTGCGCTTGAGATTCACG
AATCCTCACCACAATCTATCACAATAAACCATGGTGAAACTGCCAACATT
AATTGTTCAGCATTTGgaaatgccaaaaaaatgaATGGAAGAATCTCATC
AAAGACTGGTTCTAAAGTGCAATATTTTGTTGAACGTGCTCCTTCAGGCA
ATTCGATTCTGTTACAAGCAGTGGTAAATCAAGAAGGAATTTATTCTtgt
gaaattcaaaatgaagctggAAAGAAAGTGCGAACGTCAGTCTTTGTTGA
GATACGGCAAGTTCCTACTACTATGACATcatcaacaaaaatttcaactG
TCAAATGTATGAACTACGAATTCAGATGTCACCGTAGCAATCGATGTATC
CACAGATCATGGAAGTGTGATGGCGCGCTTGACTGTCCAAATGGTGAGGA
CGAAGACCCTGCGATTTGCTAGGACTTGAGACTACTACTAGGACTTTAGG
ATTTGAGAGGACTTTTTGAGGATGTTAATCTATGTAAAAGGTCTTGAATG
CGTAATGTATTGatcatttcttataaaaacgaacGAAATGACCAAATGAT
TATTGATTTAAATCAGATGAAAACATTCCAGAGATTCATCACCAGTGAGA
GTGTTGCAATTCAATccgttttcattttttagtcACATACAcactttttc
tataagaatggtgttaatccatttcatcatggatattcttaacttttgtg
agaaaatctttctaaaatattcttacagtattcttaagttaggatcctaa
ttcagactagatttaacattaaGCATTAAAATggcttttttgtgaaagga
gtgaacttacttgggggtaattgacactttataattgaaaatgctctaga
aatggcattcttagctttagtaacaaaatttcatgatggtgatattctta
gcatattcttaaaattttttggccatttttatcatggacattcttataaa
gtgtattcttataaaaaaagcgtgtaaaattatttctttccaaaataaaa
agttaatcaATAG
Run BLAST on NCBI

protein sequence of TCONS_00007686-protein

>TCONS_00007686-protein ID=TCONS_00007686-protein|Name=TCONS_00007686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MDKLPWIFVVCFGCLSVYNFLQNREVNLRVLQLHEHQDQGANRYRRDAST
KDGDDEDLKRFMLNFPAEKICKKFMYVCAKDKCKQEETAVIKTKESNKGG
KPQECIRGPPGPPGPGLEFPKLVKSTLHNDEVNISNSKTFECTFYGNPIP
TVTWRSPAKNFSISSTIDKQKLEVTSRFVISNVSWDEQGPIVCHAKSLLG
EAGDAGNLTVLTKPVILNHQNLVFTPEGITFDFPKCKVRSNPPAKITWKR
IFWSMPAGRFSTKRNNLLINNVQFKDEGFYVCEAENFLGKDKATTQLKVS
ALEIHESSPQSITINHGETANINCSAFGNAKKMNGRISSKTGSKVQYFVE
RAPSGNSILLQAVVNQEGIYSCEIQNEAGKKVRTSVFVEIRQVPTTMTSS
TKISTVKCMNYEFRCHRSNRCIHRSWKCDGALDCPNGEDEDPAIC
Run BLAST on NCBI

transcript from alignment at sc0000079:73483..82961+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007686 ID=TCONS_00007686|Name=TCONS_00007686|organism=Clytia hemisphaerica|type=transcript|length=9479bp|location=Sequence derived from alignment at sc0000079:73483..82961+ (Clytia hemisphaerica)
AAACCAGGCCACTTCACCATGGTTTCAATAACAACACTTCATCGAAAGAT
GAGCCAAGAAAAGaagtttcaaagcaaaaaaaacaaaatcaaaaacagat
CGTCAGCACAAATAGTACTGTACTACAGAAGAAAAGCAAGAGAGACAATA
CATTTACTACAAGAGAATCATGGATAAATTACCTTGGATTTTTGTCGTTT
GTTTTGGGTGTCTTTCTGTNAGTATTACAAGAGGATGGATAAATTACCTT
GGATTTTTGTCGTTTGTTTTGGGTGTCTTtctgtttataattttttacag
AATCGAGAAGTCAATTTACGAGTTTTGCAATTGCACGAACATCAAGATCA
AGGTATCATTATATTTCAAATAACATTTCATTATCAAGTTTCCATGAGAA
CGGACCATAAGTCTGAAACatgttagactggagtcgtttataatgcgtgt
aatacagaagtataggcgttatatgataatacgattattgttacgggatt
tagtttgtataaacgactgtaAGAATCCGGTGTCCCGGCCTTAGAGAATC
TCCGGCTAGCTACGTAGAAACTTGCGTAgaagaaaaacaatttatcaagc
aacaaaaaactcttaaaacaaaatcaactcaaatgaaaaatttttaacgc
gcacaaatccacacacattgttttttttcaagaatttcatTTTGAGTGGT
AAAAAGTTATAATTGTAATATTGACgcttcttttgtttggagttagtgca
caaaggtttctagacgactaaaattattccctccattactttttgcttta
tttctactatgcctgaattagtcgtctagttTGCTGGACTAGAAACATGT
CGtgaaaaatcaaataataacAGCCGCGTTCTTTTTTTTGTGTCCAACAC
ATTATCAAGATATATTACAAGATTTTAAACGTTTTGCGTCACCAAAATCT
GGCATTTTATCAGATCTGTGGATATTGGGTTGTGCTAAAGCTCGTTTGCA
TTTTTCTTTAGGTGCCAATCGATACCGTAGAGATGCCTCAACTAAAGATG
GTGATGACGAagacttgaaaaggttcatGTTGAACTTTCCGGCTGAgaag
atttgtaaaaaattcATGTATGTTTGTGCAAAAGGTAAAAATTGCTGAAT
CAACGAAATGTTCTAAatgcttttttttaagaatatcttctataagaata
ccagggtgaaaattggccaaatcgtaagaataccctaagaataccctcta
tggtgaatttcacagaatttgataagaatttagtcattttgtatttggtt
aacataaaaaactgcttcctttgttagagatgGATCGAAACTTTGAGGAA
GGATGTTCataaagtccaaaactctcaaattgatcattttttatgtttgt
aaaaaagttaagtctaaaaaagtaagaatacgttatgAATATCGCCatga
atatttcaccctcaattttggcactttcttaagaatacttgaccctatAA
AGATGCGAAGAAAAAGTTTGTAAGGATCACCCTAACCCATAAAAAAAAGT
Atgaagaaaaatcgaaaaatcaaaagattttcatcaagttaaaggtttta
tttaagagcaatatcgtttgcttactcatcaattttgatttttacaagct
ttttcacattggattggaGAAGGGGGGGTTTCAcgtttggcggaggagcg
gaatcggcccttttttcggacggagtggcggaatttagtgaaaatttaga
tggaattacggaaattgggttctctgacggagacggaaaattagacaatt
ttagtgcggaaaaacggaatttagcaaaaaaaattgcggaatttcggaat
tggtaaaagatattccaaatttgcggaattttcgacaaaattattgaatt
tcaaaggaattttcggtgacggaattttNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCCCTGGagacggatgtggagcaaggtGATCAGAAAAagggaaagaa
aatttctttgtatatatcagcataatataacaataggtactgataggtag
acactgtcctgaaatgaaatatgtgtctgatatgaaacgagattacttat
gtaaaaataaaacctttaatgctAAAGAGctaattttcttttattcatct
aCAGATAAGTGCAAACAAGAGGAGACAGcggtcatcaaaacaaaagagtc
CAACAAAGGGGGGAAACCTCAAGAGTGCATTCGTGGTCCTCCAGTAAGTA
TACCAAATTATTCTGGTAGAGTTAGTTCACAAAAGGCTATCttactttga
aaaagttttgaaatttggaaCAGATGTTTCTTTTGGGTCCTAGAACCTCT
AATCGAATCGACAATGTTAGTGGCATTTTTATGATGATAACGTCAATTTT
CAGTACATACCTCTTGcaaacaattttcttttgcaTAGCTGATATAATAC
CTAAATAGCTTCCTAGAAAATTTTGTTGACACTtataaactttttgactt
ttaatataatcttaTTAACAACATGTATGCCAAATTTTACAACTATATAC
CAATTAGATCAGGTTTAGACAGGGAGGGGGATCTGCTTTGCTAATTTTAA
AAGCTGAATTTTCCAGTTTTTTCTCTAACTTCAGTGTAGCttctatttga
aaaatgtaaacttTAATGAGGCTTAATAGTTTTCTTTCTCTTTGACATTT
AAAAGAAGTTCAACACAATTGATGTTAAACTGTAATTCCAATAGTTTTCT
TTCTTTAGAGGAAGGGGGGGGGCTCCACTTTCTAGCTCATGGCACAAGCC
CTGATCATGTCAAAATGATTTGACCATCTCTAATGTCTAATTTGCCTTTG
TGTCTATGgcatagatatcttatataaaacactagatagagctactatgt
atttctcaagaaaatgcacGTACGGCAGGCGAAGCAAAATAATCcaccat
ctttgctgaaagttgGTCAgagttcggtaccggcaatttgttaAACCAAG
CAAAAAAACTGAATAGCGATAAGCGACGAGGCGAAAGATAGGCTTGATCG
ATCAAATTACCGGCACCGAGCTATAGTCTacttatcaaagatggcggatt
atttAGATTCAAATAGggacagagtagctctatcaaGTGTTTTAAAGATA
TCTGTGGTTTATGGTGTCAAAACCGTCTTGTTATTTAAAGATCATACTTC
gattcttttttcaataaaggGACCACCAGGACCTGGACTTGAATTTCCAA
AACTTGTTAAAAGCACACTGCATAATGATGAAGTAAACATTTCAAActcc
aaaacattcgaatgtacaTTTTATGGTAACCCCATACCTACAGTAACATG
GAGAAGCCCTGCAAAGAATTTCAGTATCTCCTCAACAATTGATAAACAAA
AGCTTGAAGTTACAAGCCGTTTTGTGATCTCGAACGTTTCCTGGGATGAA
CAAGGTCCGATAGTATGTCATGCGAAGAGTTTACTCGGTGAAGCAGGAGA
TGCAGGAAACCTTACTGTATTAAGTAAGTGATTGTTCTTTTATCTGGAAA
TCTtataagtaaaagaaaagaTATATAAGAAAGGATTGCCAAAAATGGAG
TTTCCAGCATCAAAGGATAAAAGTTAATTTGCTTCTTCTTCActgttcat
cttcattttcaacaaTGTGTTATTTGCCCAGGGGgtcactcgattcaaaa
acgacccaaaattaggcctttgaaatcggaacCTCACATTGCAAAGAAAA
TTTAACCAGATTTGAGTAAAGTTGgccgaaaaatcgacccttacagtgca
ccactttctaaaacatttttgaccaattttagggaaaatggtcagatttt
caaaattttacacatctttgctcatttcgagCCTTTCGAGTTCATTTCAA
AGGGACCCTTAAGGGCCAcacgtacggtaggtcgtttaccttgagtgccc
cccccacCCCGGTATTATTGGAATTAATACTATATGGTTGAAAAATAACG
AGCTAAACGGCAAGAATTAGTGCACACTAAAAGCAAATATGccataccca
gctggcacacaacgttttttcgacgtttatctaacgttcacaacgtccat
ataacgttagatgaacgttgaaacaacattgtgtgctagctgggtaAGCT
CAGCATTAAATTAGCTTAGGTTATTAGAAGGTCATATAGAGtagaaattt
tctaatttaaattCTCATAAAGCTATTTATTTATGTGGCAACGCAGGCAA
AAAAGCCTTCCTGAAAAGCTTAAATTGCTGGCCTTTCTCAAATGATACtt
ctattgggcttttccagaaaaaaatcgtgcaccccctgttgaggaggtcc
atttccgttccaaggggctAAGGTTTGAAAtacagtggaattccataagg
gtagacgaaaatccgtcaaaaataagcggaattccaagggggtaatgatt
gaaaatttgtaaaaattcggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcc
aagggggtaggtcacaaaaggttggacctcctcaacagggggtgcacggt
ttttttctggaaaagcccatttggCCATAACCACGATGTAATTATTACAA
CTCACTCTCCTTTCCAGCAAAACCAGTCATATTAAATCATCAAAACTTGG
TCTTCACACCAGAGGGAATCACTTTCGATTTTCCCAAATGCAAAGTTCGA
TCAAACCCACCAGCAAAAATCACTTGGAAACGCATTTTCTGGTCAATGCC
AGCAGGCCGATTTTCAACCAAACGAAATAATTTACTAATTAACAATGTCC
AGTTTAAAGATGAAGGATTTTATGTTTGTGAGGCGGAAAATTTTCTAGGT
AAGATATCTTTGTGATTGAATACGAAAATTTCCGGCGGTACTATTCATCA
TGTCATCAAATCGATGAAGCAGGTTGTTGATCAAAGTACAGAGGCTAGCA
TGTacacgtttctttataagaacaaactataaaagagcataaggcttcgg
tgtcaaaaatattaagaacaaattaagaacattttatggctttgtgtact
caaaaacaaaaataatcacaaaatggtgaaaaaactctgttaagaacatc
ccaaagacttcaaaatttttggatgttcttattaaaaaaacgtgtatgca
acTTTTTTTGATGTATCTTTCGTACTGAGATTTCTTTCTCTTAGGAAAAG
ACAAAGCCACGACACAGTTGAAAGTTAGTGCGCTTGAGATTCACGAATCC
TCACCACAATCTATCACAATAAACCATGGTGAAACTGCCAACATTAATTG
TTCAGCATTTGgaaatgccaaaaaaatgaATGGAAGAATCTCATCAAAGA
CTGGTTCTAAAGTGCAATATTTTGTTGAACGTGCTCCTTCAGGCAATTCG
ATTCTGTTACAAGCAGTGGTAAATCAAGAAGGAATTTATTCTtgtgaaat
tcaaaatgaagctggAAAGAAAGTGCGAACGTCAGTCTTTGTTGAGATAC
GGCGTAAGTTTGTCAGTAGTATGTTATGTACGCTATGAAGTTTAACTTTT
AAGTAAATTCATATaagcaactttggtaggatttgttggcttcaaatcct
ataagggagattcgattctagcccttcgatCTTATCCTTCATtggttttg
ccttttttaactCTATCTTCTGAATCCAAATACATTCTTCCCTTACCCCA
TTCTTTTTATATAGAAATCTTACACTAgacataactttcattaaggtgcc
accgcagcaaaacgtacacatagagttgaatttgctttcaaaaggaaaaa
ttctttcaaatgctaacaaatgtttcaagggagtgatttacagtctactt
agagtgacatccgtgccttttcttacacttttttataagagcaatttcat
aagaatacgaggctaaaatttggccaaaacctaagaacaaattaagaaga
atctaagccttagatttcagaaattactgagaaatACAGGTTTCCATTTT
TATTAATATTGACATTGAAGCCTGAAAAACTTATATAAAACTAAGAGCAG
CTCAGCCTAGtatacacaatagacagatccaggcttttaggccttactct
tggtctataggcactgctataggcggccactagtgactcccaccgggaat
tgcttattaataggtttaaacataatagacaacattcacaaaagatgttt
atcaatagagattttaaataaaagaatgtttaaaacacagctgaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
actctctattgtttcattaaaacctcagtgcgcatgcgatttatctggag
aatttcaatattcaaaacaagagcagtgctcatagcccgaagagtaggag
ttttacgctcgaaacgaaggaagatatgacgaaGCCTaagcccagccaga
atcatatgacttgctggtttttcttataaagagtGTTTATCTGAagtaga
caggcagctgacgacatcaaaaaaagtgaataagtgaaaattcgagggac
aaatattgagtacttattttgaaatctttatagtttagagagtcagaaaa
atttactCGGCGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAATTTTTAGGATCAGTAGAtatatgggaacaagaaaa
atcaactcgacgtttgtcccaaagtcgtccagattttagatgtcgtcagc
tgcctgtctaaagatactgctcttcatatgttattttactaatgtagaCG
TTTAGCAGCATATAACTGTTCAAATACTTTGAGTAGGGTAACATTTTCat
taacctatgaagagcgcttaataactacttgtggtataaaaagggaattt
cccagaaaagggaatttccttagattcattaactctccagggataagaaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttcaaaatg
agtaatcagatcaaaataactctggaaaagtctttttgatgatgataaaa
caatagagagaccgtaagaaaagaatgctaccgttaagcggaactaaaat
actgaaaaacgcagTTTTGCGGTGGCAAAAACGGATTTTTGTCTCATAAA
AAATCACAACCCTTTCACACAGACCCGATATGATCTTTTCAGCCATTGAG
GGTAAAAATAACAGGCCAAAACTCAATGGGCATTGATATTCCAATCCATG
TTTTTTATGACCTTAaaggatttgaattccattatttacgagccagaaaa
ttcatcagtggggatggaaaaatgtCTTATAtaatttgcttatctgattc
tttctttatgatgataaCAGTTAGAGTATAATTTGCCACTGGGGAcgaaa
tattttcattaatttttccagtggaaagcggtcccactgggtctgtgcga
agggggggggggtaaaataGGTAAAAGGGTAAAATCATATCAAGTCAATA
TCACTTTCCATCTTCTATCTACAGAAGTTCCTACTACTATGACATcatca
acaaaaatttcaactGTCAAATGTATGAACTACGAATTCAGATGTCACCG
TAGCAATCGATGTATCCACAGATCATGGAAGTGTGATGGCGCGCTTGACT
GTCCAAATGGTGAGGACGAAGACCCTGCGATTTGCTAGGACTTGAGACTA
CTACTAGGACTTTAGGATTTGAGAGGACTTTTTGAGGATGTTAATCTATG
TAAAAGGTCTTGAATGCGTAATGTATTGatcatttcttataaaaacgaac
GAAATGACCAAATGATTATTGATTTAAATCAGATGAAAACATTCCAGAGA
TTCATCACCAGTGAGAGTGTTGCAATTCAATccgttttcattttttagtc
ACATACAcactttttctataagaatggtgttaatccatttcatcatggat
attcttaacttttgtgagaaaatctttctaaaatattcttacagtattct
taagttaggatcctaattcagactagatttaacattaaGCATTAAAATgg
cttttttgtgaaaggagtgaacttacttgggggtaattgacactttataa
ttgaaaatgctctagaaatggcattcttagctttagtaacaaaatttcat
gatggtgatattcttagcatattcttaaaattttttggccatttttatca
tggacattcttataaagtgtattcttataaaaaaagcgtgtaaaattatt
tctttccaaaataaaaagttaatcaATAG

Coding sequence (CDS) from alignment at sc0000079:73483..82961+

>TCONS_00007686 ID=TCONS_00007686|Name=TCONS_00007686|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000079:73483..82961+ (Clytia hemisphaerica)
ATGGATAAATTACCTTGGATTTTTGTCGTTTGTTTTGGGTGTCTTtctgt
ttataattttttacagAATCGAGAAGTCAATTTACGAGTTTTGCAATTGC
ACGAACATCAAGATCAAGGTGCCAATCGATACCGTAGAGATGCCTCAACT
AAAGATGGTGATGACGAagacttgaaaaggttcatGTTGAACTTTCCGGC
TGAgaagatttgtaaaaaattcATGTATGTTTGTGCAAAAGATAAGTGCA
AACAAGAGGAGACAGcggtcatcaaaacaaaagagtcCAACAAAGGGGGG
AAACCTCAAGAGTGCATTCGTGGTCCTCCAgGACCACCAGGACCTGGACT
TGAATTTCCAAAACTTGTTAAAAGCACACTGCATAATGATGAAGTAAACA
TTTCAAActccaaaacattcgaatgtacaTTTTATGGTAACCCCATACCT
ACAGTAACATGGAGAAGCCCTGCAAAGAATTTCAGTATCTCCTCAACAAT
TGATAAACAAAAGCTTGAAGTTACAAGCCGTTTTGTGATCTCGAACGTTT
CCTGGGATGAACAAGGTCCGATAGTATGTCATGCGAAGAGTTTACTCGGT
GAAGCAGGAGATGCAGGAAACCTTACTGTATTAACAAAACCAGTCATATT
AAATCATCAAAACTTGGTCTTCACACCAGAGGGAATCACTTTCGATTTTC
CCAAATGCAAAGTTCGATCAAACCCACCAGCAAAAATCACTTGGAAACGC
ATTTTCTGGTCAATGCCAGCAGGCCGATTTTCAACCAAACGAAATAATTT
ACTAATTAACAATGTCCAGTTTAAAGATGAAGGATTTTATGTTTGTGAGG
CGGAAAATTTTCTAGGAAAAGACAAAGCCACGACACAGTTGAAAGTTAGT
GCGCTTGAGATTCACGAATCCTCACCACAATCTATCACAATAAACCATGG
TGAAACTGCCAACATTAATTGTTCAGCATTTGgaaatgccaaaaaaatga
ATGGAAGAATCTCATCAAAGACTGGTTCTAAAGTGCAATATTTTGTTGAA
CGTGCTCCTTCAGGCAATTCGATTCTGTTACAAGCAGTGGTAAATCAAGA
AGGAATTTATTCTtgtgaaattcaaaatgaagctggAAAGAAAGTGCGAA
CGTCAGTCTTTGTTGAGATACGGCAAGTTCCTACTACTATGACATcatca
acaaaaatttcaactGTCAAATGTATGAACTACGAATTCAGATGTCACCG
TAGCAATCGATGTATCCACAGATCATGGAAGTGTGATGGCGCGCTTGACT
GTCCAAATGGTGAGGACGAAGACCCTGCGATTTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004359XLOC_004359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007686-proteinTCONS_00007686-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007686-exon-sc0000079-1491911889:73483..73834TCONS_00007686-exon-sc0000079-1491911889:73483..73834Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:73483..73834TCONS_00007686-exon-sc0000079-1510915933:73483..73834Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:73483..73834TCONS_00007686-exon-sc0000079-1575043694:73483..73834Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:74494..74616TCONS_00007686-exon-sc0000079-1491911889:74494..74616Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:74494..74616TCONS_00007686-exon-sc0000079-1510915933:74494..74616Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:74494..74616TCONS_00007686-exon-sc0000079-1575043694:74494..74616Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:75837..75925TCONS_00007686-exon-sc0000079-1491911889:75837..75925Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:75837..75925TCONS_00007686-exon-sc0000079-1510915933:75837..75925Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:75837..75925TCONS_00007686-exon-sc0000079-1575043694:75837..75925Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:76902..77205TCONS_00007686-exon-sc0000079-1491911889:76902..77205Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:76902..77205TCONS_00007686-exon-sc0000079-1510915933:76902..77205Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:76902..77205TCONS_00007686-exon-sc0000079-1575043694:76902..77205Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:78750..78980TCONS_00007686-exon-sc0000079-1491911889:78750..78980Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:78750..78980TCONS_00007686-exon-sc0000079-1510915933:78750..78980Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:78750..78980TCONS_00007686-exon-sc0000079-1575043694:78750..78980Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:79327..79635TCONS_00007686-exon-sc0000079-1491911889:79327..79635Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:79327..79635TCONS_00007686-exon-sc0000079-1510915933:79327..79635Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:79327..79635TCONS_00007686-exon-sc0000079-1575043694:79327..79635Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1491911889:82207..82961TCONS_00007686-exon-sc0000079-1491911889:82207..82961Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1510915933:82207..82961TCONS_00007686-exon-sc0000079-1510915933:82207..82961Clytia hemisphaericaexon
TCONS_00007686-exon-sc0000079-1575043694:82207..82961TCONS_00007686-exon-sc0000079-1575043694:82207..82961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:73483..82961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50699	1.77054	1.50134	1.14761	0.198876	0.174159	0.910377	1.09509	8.31681	7.30727	9.60329	8.30972	29.6466	27.1261	95.1208	99.6192	22.8439	24.5754	20.3735	20.88	21.6311	19.5599	13.2627	13.208	13.3922	12.1784	3.10208	7.0381	46.031	54.7493
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR002172LDrepeatLR_classA_rpt
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00007686 vs. Swiss-Prot (Human)
Match: HMCN2 (Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 3.265e-18
Identity = 73/258 (28.29%), Postives = 118/258 (45.74%), Query Frame = 1 
Query:  658 CTFYGNPIPTVTWRSPAKNFSISSTIDKQKLEVTSRFVISNVSWDEQGPIVCHAKSLLGEAGDAGNLTVLTKPVILNHQNLVFTPEGITFDFPKCKVRSNPPAKITWKRIFW--SMPAGRFSTK-RNNLLINNVQFKDEGFYVCEAENFLGKDKATTQLKVSALEIHESSPQSITINHGETANINCSAFGNAKKMNGRISSKTGSKVQYFVERAPSGNSILLQAVVNQE--GIYSCEIQNEAGKKVRTSVFVEIRQVP 1416
            C   G P PT+TW+    N  +++ +  Q L    +  I++ S ++ G  +C AK+  G A     L V   PVI N    + T EG +  F  CK R +P   ITW +     S   G+F+ +    LL+ N++ +D G Y C AEN +G+ +    L +  L +  + P   ++  G+   + C+A G+      RI      +          G S L +A V++E  G Y C  +N  G+    S FV +++ P
Sbjct: 3963 CEASGIPRPTITWQKEGLN--VATGVSTQVLP-GGQLRIAHASPEDAGNYLCIAKNSAGSAMGKTRLVVQVPPVIENGLPDLSTTEG-SHAFLPCKARGSPEPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTILVLPVFTTLPGDRSLRLGDRLWLRCAARGSPTP---RIGWTVNDRPVTEGVSEQDGGSTLQRAAVSREDSGTYVCWAENRVGRTQAVS-FVHVKEAP 4212
The following BLAST results are available for this feature:
BLAST of TCONS_00007686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN23.265e-1828.29Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3[more]
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