TCONS_00007686-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007686-protein
Unique NameTCONS_00007686-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007686-protein ID=TCONS_00007686-protein|Name=TCONS_00007686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MDKLPWIFVVCFGCLSVYNFLQNREVNLRVLQLHEHQDQGANRYRRDAST
KDGDDEDLKRFMLNFPAEKICKKFMYVCAKDKCKQEETAVIKTKESNKGG
KPQECIRGPPGPPGPGLEFPKLVKSTLHNDEVNISNSKTFECTFYGNPIP
TVTWRSPAKNFSISSTIDKQKLEVTSRFVISNVSWDEQGPIVCHAKSLLG
EAGDAGNLTVLTKPVILNHQNLVFTPEGITFDFPKCKVRSNPPAKITWKR
IFWSMPAGRFSTKRNNLLINNVQFKDEGFYVCEAENFLGKDKATTQLKVS
ALEIHESSPQSITINHGETANINCSAFGNAKKMNGRISSKTGSKVQYFVE
RAPSGNSILLQAVVNQEGIYSCEIQNEAGKKVRTSVFVEIRQVPTTMTSS
TKISTVKCMNYEFRCHRSNRCIHRSWKCDGALDCPNGEDEDPAIC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004359XLOC_004359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007686TCONS_00007686Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR002172LDrepeatLR_classA_rpt
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 315..379
e-value: 2.1
score: 4.0
coord: 133..200
e-value: 0.38
score: 11.2
coord: 226..289
e-value: 0.005
score: 26.1
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 127..211
e-value: 0.081
score: 22.0
coord: 309..391
e-value: 0.5
score: 19.4
coord: 220..300
e-value: 1.5E-4
score: 31.1
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 407..445
e-value: 1.3E-9
score: 47.9
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 407..443
e-value: 1.5E-10
score: 41.0
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 407..445
score: 12.213
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 404..443
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 125..210
e-value: 4.7E-10
score: 39.3
coord: 223..299
e-value: 4.6E-9
score: 36.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 251..319
e-value: 1.0E-13
score: 50.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 215..250
e-value: 0.063
score: 12.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 120..214
e-value: 9.2E-11
score: 41.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 320..390
e-value: 1.1E-7
score: 31.4
NoneNo IPR availableGENE3D4.10.400.10coord: 401..445
e-value: 9.0E-11
score: 41.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..114
NoneNo IPR availableCDDcd00112LDLacoord: 408..441
e-value: 4.11517E-9
score: 51.4386
NoneNo IPR availableCDDcd00096Igcoord: 139..203
e-value: 4.70782E-6
score: 43.2467
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 421..445
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 120..211
score: 9.537
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 214..300
score: 10.48
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 207..299
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 120..216
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 307..395

Blast
[Close]
BLAST of TCONS_00007686-protein vs. Swiss-Prot (Human)
Match: HMCN2 (Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.917e-18
Identity = 73/258 (28.29%), Postives = 118/258 (45.74%), Query Frame = 0 
Query:  142 CTFYGNPIPTVTWRSPAKNFSISSTIDKQKLEVTSRFVISNVSWDEQGPIVCHAKSLLGEAGDAGNLTVLTKPVILNHQNLVFTPEGITFDFPKCKVRSNPPAKITWKRIFW--SMPAGRFSTK-RNNLLINNVQFKDEGFYVCEAENFLGKDKATTQLKVSALEIHESSPQSITINHGETANINCSAFGNAKKMNGRISSKTGSKVQYFVERAPSGNSILLQAVVNQE--GIYSCEIQNEAGKKVRTSVFVEIRQVP 394
            C   G P PT+TW+    N  +++ +  Q L    +  I++ S ++ G  +C AK+  G A     L V   PVI N    + T EG +  F  CK R +P   ITW +     S   G+F+ +    LL+ N++ +D G Y C AEN +G+ +    L +  L +  + P   ++  G+   + C+A G+      RI      +          G S L +A V++E  G Y C  +N  G+    S FV +++ P
Sbjct: 3963 CEASGIPRPTITWQKEGLN--VATGVSTQVLP-GGQLRIAHASPEDAGNYLCIAKNSAGSAMGKTRLVVQVPPVIENGLPDLSTTEG-SHAFLPCKARGSPEPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTILVLPVFTTLPGDRSLRLGDRLWLRCAARGSPTP---RIGWTVNDRPVTEGVSEQDGGSTLQRAAVSREDSGTYVCWAENRVGRTQAVS-FVHVKEAP 4212
The following BLAST results are available for this feature:
BLAST of TCONS_00007686-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN21.917e-1828.29Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3[more]
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