XLOC_004435 (gene) - C. hemisphaerica

Overview
NameXLOC_004435
Unique NameXLOC_004435
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000080:148162..151946+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004435 ID=XLOC_004435|Name=XLOC_004435|organism=Clytia hemisphaerica|type=gene|length=3785bp|location=Sequence derived from alignment at sc0000080:148162..151946+ (Clytia hemisphaerica)
CTGAAAATAGTTGCACTAATTCCAAATTTGTAGTGAACTTTGAACACGGT
AAACAGCCCCATTGTAGAGAAGGAAGTATAAAATTGGCCTGGAAATCTTA
TAAAAGAGCAAAATGATTCGATAAACTCAAACAAACTCAAGGACCAGGTA
ACAAAGCACAGGAGCAAGGAAGGAAGAAGTAAGAAAGTCAAAGCAGAATA
AAACACTTTCCATCACAACAACGATGGGTGAAAGTGAAAAGAAACCAACA
GAAGATGTAGAGATGAAAAAACCTCAAGGGAAATTGAAAGGATTTCTAAA
TAACCCTTGGATCTATTGGTCATTGATTATTTTGCTGCTTGGAGGAATTG
CTGCACTGACAGCTCTTGTAGTGGTCCGTGACAATGAGAACCAAGGAATC
AAACAAGTCCTGGTGCCAACCGAAAAACAGAGCAGTAAGGAGACAACAAA
GAAAGATGACAGCGACATAGAAGTGGATTTCGAATCATTGAATGGGACAC
ATTTCGGACGAATGAAGGCTGCCCATAATGGTAGCGAAGCAGTGATCACA
TACAAGTTGTTATGTCAACACAATGAAACACATTATCATTCTATTATGGA
CTGCAGAATGACCCAGTTAGGTTGTGCAGAGATTAAAAAGGTAAAAGATA
TATTTCTTCTATATGAAAATTCTAATGGGATGGTAAAACAGTACACGGTA
ACACGCGGCGGTAATAACCCTTTATCCTTTCTTTTAAGTGCTGACCAGAC
CATAGCTCACATGGtgagaaaatcaatatttgaagaTAAAGCCTTTCTTA
CAGCCCCGGTGGGAATTCTTTCCTACATTTGGGGATGAAACGCTCTATCG
AAATCCTAAATGGGGATATAGATTCTACTTTTCTTAAGACAAAAAATCta
atggggatggttttggagtgcaatattCTGCCTTGAAGTTCAAATGGGAA
TGAAATGAAAGTAAATTTCCCAGTGGAACTGAACATGTAGGCTAATTTTC
CCACCAGAAAATGATGCTATAATTTTGGTCAGAATGTGTTGGCATTTCTG
GGTATTTTAGCGTTTTGCCGAATTTAAAGTTCAGAATGACATTTTCAGGA
TTTAGGATCCTTAAGATCGTAAGTCTTCAGTCTCAGATTTAAACTTAGAG
TTAAAACTCAACTTTCCAAGTTAAGTTAAGACACTTAAAATCTACTTgca
gtttctaaacttttgcTGGGAAATTCCCCTTGTACCAAATATTGTGACAA
TAGTTGTAGCTAGACATCCTTGTAAAACAAACCGCTGGAAccacagcccc
actggaaaatttggcaaaaatttcgtccccagtgggaaaaAGCCCTAGta
tttcagccccactaggaAATTGACTCTCATTTCATTCCCATTCGAAAatc
aatgtttgaaaaaattgcACTACTCCAagaccatccccactggattcttt
aaccttggaacaatttCTCTCCCCATctggatttcaataggaatttttaa
ccccgctgtgggaaaaagttccgctggggctgtgagacaggggtgtggcT
AATCATGAAATTATCTATTCTAGATGAATGTGAGTcaagaagaaggagaa
aaagaaaaagaagatgatgACGAATGCTTAATGGAGAATATGACCTTCAT
TTTCTCGATCGATATCGACGGCAATTTCTACACCACTGAAACAGAGTTAT
TCGATTCAATTCGATTAGCTGTTGCTCTTTACACAAGACATCTGAAGCTT
CCCAGCGGTGAGAGTGAAGGTGTGGGAAACGAGAATGTCCACAAAACCAA
TTCAACCTTCGCTTTTGTTTCATCACATGGCATAACTTTTGAAGTCTTGG
AGCTATCCGAAGATGAATTGCGACCGCTTGTAAAACATAGACGGAAAAAG
AGGGACACGATCGTTTCTGTACAGGCTTCCGGTTCTTTGGCGAAAGAAAA
AGGCATCTACCGTCAGCGACGTTCTACAAATATTCCAGATTTAGGAGGAG
CTTTTGAAAATGGATTGAGAAATATGTGGCAAGGTGGTCCCCACTTGAAG
ATCCCAAATTTAGGTGGAGATTCTGGAAGTGCATTATGGGGGATTGCCAG
GTATAGATACACTCTAACAAACTTTGAACTATTGTTCACTACTTTACCAA
ACATTGAGttatcttcaaattctaaaACCCCCGATTCTTGCAATCTTGAC
TTGAAGATAGATTTTTCGCAGGACAAAAAATGTAACAAAGTGATAAAGGG
ACATATAAAAGTAAATGCAATTGGTCGTCTCTGTATCTGGTTCTTTTGCT
TTGCGAGCGTTAGGAAAGCCGATTATGTGTCATTTGACTTTACACCTGTG
ATCGAGATCGGCTTAAAGCTCAAACTTTCCGTTGGAAATAAATTGGATTA
TGTGTACGAACTTAAAAGATCACATTCAGGCAAGAGTGTCGATCTAGGTC
GTTTAGATGTCAATGTCTTGCTAATTGGTTTTCTGGCTAATAAACATATC
GAAAGATGGATTCTCAAGGAACTTTACAAGCGCCTTGATACAATAGTTGA
ACCACAGCTAGAAAATCAGATCAAAAAGCTTTTACCTAAACCAGGTCAAA
TTCAAGTTTCCAGTGCAGTGATGGGTCCATTGTCAAGCTCCTTGAATCAA
TGTAATAACCTCAATACAATCAGCGTTCAATTATCGAAAATCGGCAATGT
GCTTCAGGCTGTACCTCCACCCTTCGGCCCAAAAAAAATCGCATGTTCAG
GGAATGGATTAATCCAAAGAGTTCACGATGGCTGTTTGCACGATTACGGG
ATGAGTCGAAACAGTGATCACTTAGAAGTGTATTGCTATAAGGGTGCAAA
GCGATTCTGTCTGTCTGGCGAGTTGTGTCCTTGGAGAGGCTCTCAACCAG
CTCAATGTTCAGCAATGTTTGCGCTTGCAACATGTTCCGTTGGAGGTTTG
AGTAGCTCTGCCATGGCAGTGACCTGGGGCCAAACAAGATCATGCTGGAG
AAGTTGCAGTGGATGGTGGATTTTTCGTCGCTGCAGCTGGAATTGCAGAT
GTAGCGGACCCAGATTTCGTGTCAATTGCAATACTGGTTCTGCTACTGTG
AGTTATTATTGAGAATGAACTCTCCTTGAAATTTCATTATGTTATGATTC
GATCTTTAAATATTTCAATCATTTTACTTCACTTAATTTGTTAGGGTTTG
atgagttttattttttattaatgaAGTTTGTTGAATGTTTTGAATACCTC
TTCAGAAGATCGACGCAGTGTTATCGGGTTCACGAACCTAGAAAAATGAA
GAGAGATTTTCAACACTTTATCAACAAGTTATCAACTATTGTAAAGTATT
ATTAAATGACCAAGAATGTATTAGTGGAACCTCCAACTGTTCGAATTATA
CGAAGACTGTTTAAAAAGGGTTTATTGACTTCAGGGAAGAAAAGAGGTAT
ATTCGGCTATTGGAAACTCCACCGTAGTAAATTTTTGCCTtgtattttaa
gtttttcttaggGTTGCATATGAATGCAGAAAACattattattttaagaa
aattaaattgtaaATGTTACGTATGTCAAACACTCGTTAGGAGCAGAGAC
CTTGAATCTTATGGTGAAAAGCACCAAAATTCGACTTAAAAACTACCCAA
GGCTCTTTATTGGCTTTATTGTTCTTGACAGCTTCATTGAGACAGATTAT
TTGTCACATGTTGTTTAACCACTTGATTGTCTAATTTATCATgtaatact
tttatttattttgacaaTAAAATTTCATACACTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007807TCONS_00007807Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007807-proteinTCONS_00007807-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:148162..151946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.88	0.41	1.65	2.47	0.72	0.61	0.41	0.52	12.13	0.6	0.04	0.07	0.13	0.15	1.46	1.85	2.61	2.53	33.87	40.11	29.91	9.39	15.8	8.73	0.09	0.08