XLOC_004778 (gene) - C. hemisphaerica

Overview
NameXLOC_004778
Unique NameXLOC_004778
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000086:96600..100019+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004778 ID=XLOC_004778|Name=XLOC_004778|organism=Clytia hemisphaerica|type=gene|length=3420bp|location=Sequence derived from alignment at sc0000086:96600..100019+ (Clytia hemisphaerica)
TTTGATATTATTGAATATACTTTTTTGACCGTAGTTGCCAATTGCCGCGC
AGctattttttgtccgttttaccaacctaaaaccgtcccaatcttttttt
cgcacctatagacaatacaaaaaggtgtaaaaaaagaattagatCAAGTT
TAGGCGGGTAATTAATTAATAAAGCGGCACACGCCTGACCGCGTGACTAC
GGTTTATTTGTAGAAAACATTGAAAGTAAACTCACACATTGTGATGAAGC
CATACAATTCTTTATCGGTACTTCTCTTCGGAATGGTGTTGGCTTGCGTC
ATATTGATCTTCAGGATGTCCGAACTAAAAGGTGAGAGAAAAatcgtttc
ttttttataagaacagttttCGTAAGATTAAGGTTCAAGTTTGCAAATCT
TCAAAGTGAAATAACATTCTGACTTCATAAATTAGTTGACTTTTTCAACT
GACCCTGAGTCCTTTTAGTGTAATTAGCATAAACATATCTATGCTTAAAT
TCTCGAGACCATAAAAAGGCTAAAGCCAAAATCTGCTACTGGTTCATAAA
AAGAGGCTACACCGTTCTAtctctaaattttcaatttttgatctactact
cttgtctcccggaTAGACGTCCCCCcactaattgttaagagaaaaaaaat
ccatccccctgctcttattaagacccccctctaattaaattcgaataatt
caatattttattacagtgtagatagaccataaacttgttaaaattttcct
tttcgttagtattggttcttattttacgtgttcatttgttaaagtttctt
ttttgttgttaaaattGATATAAGTTAAAAGAATTCTGTCTtcaaatccc
cccccccccctcttatttCATCCCCcagcttattagaatttagaaaatgt
tcctaccccctgcttatttggacctcccgtctattcgggagacaagagta
gctACTTacgcttttttcaaaaattgaaatgatacaTTTTATATATGTAA
CATTAAAACATACCTCTTTCCTACCCGGTGTTTACTTCGGGGAAATATAG
TCAATGAAAATGACAGATTATTCTTTTACAATTTATTAATATTTATTTGA
TAATCAAGTTATCGGTTCGGCACAAATCGTCTTCAATGTGCCAATAtgtt
atcaatttttttaatgttttttaatttctatcaaattttgGTGCTTGCCC
ACTTTTCCATTCCCACCCTTTCCATTTCCCATCCCGCATTAAAGACAGTC
taaaaactattttcaaaacattgcaGATAATAGGTATTGATTTATAAGAT
CAATATAAAGCTTTTTCATTCTGGGAAACGGGGATTTTCATCTTTAGTtt
agtagtaagtaagtctgcgaccacagtcggaggcgacccgaaggctcctc
tttcgatagctatctacccgaaggtaggggagggcgccactctttctcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaagtaccattttgggaatc
tttggtatgacccggctgggggttgaacccacaaccttgcgaaccgtagc
cggatgctctaccactgtactacggtacTTAGGTTAGTACATAGAACcgc
ctctacagattcgaacgtttgcttcgaTAATTCTGCAGAAATTATGTTGC
TTAACAAAAAGCATGTGAACCCTTATGCACCCATcatattttagcttttt
ttatctcttttagaTATATTCTCTTTCCTAACATTGACGAGAATCAAGGT
AAAAAGTGTACCAATCTTCTAGAGTGAAGCTACAAACGAACTGTCTTAAT
TGAAAACTAAACCTTCGATATTGAAGACTAAACCCTTCTATTGTAATCTG
TCAAAGTCAATAGGTGGTGTattattttcattaatttaatgaaaataatt
aatGCACGATTAATCATGTCGATCCTTACCAGAAAGGATATTGAAGCtca
attttatgattttcataacattcattctagatttttgtctTAATTCCTTA
GCCTACTGAAGAAGGACCAAGCACAAAATATACATCTGAAACACAACAAA
CACGTCACGACCAGTTACAAAAATTCTGCGCTACACATCAAAATATTCAT
TACACTCGGAAATATGATGCCAACTTGATGTATAGTCGAAAACAAAAGAT
CATGTATTGTCATATACCGAAAGTTGCATGCTCCACGTGGAAAAAGATCA
TGGCATACTTTCTTGGACTTCTGAAATCACCGTGGAAGGATGTCACCTTG
GCAGAAGTAagtaaaatattgattttcttcaTCTGAGACATCTGAAAGCT
GtgcaaattctaaaaataaaatttaaggatttTATGCTCTTTTCTTCTGC
GGGATTtcctaaaatataaatttatcgTCTACACAAAGTCACTAAAAAGT
AATAATTTAGGAAggtgataatattgaaagcagAGGCTAGTCCAGGGCGG
GGTAAACAGTCTCGGAGGTGTTCACACTGTTTTTACCAAGCTCTACCGCC
ACTATCTTTTCCGTCGATCGTTCATTGCGGCTTTAATCTCGAGCTTGTAT
TTCCCTGCGTTTACTCTTATTtttgtattgatttttttttcagctttaCG
GTTTCGACATTCCAAGTTTTCAAACAGCATCCAATCTAActatcaatcaa
atcaaaagcaACAAGAATTATTATTCCTTTATGTTTGCACGTCACCCTTA
CGACCGGTTATTTTCCGCATACCGGAACAAGTTTTTAGATCCGGTAAATC
TTGGATATTTGAAACATTACGGACCTATGATCATCTCAATGGATGTGAAT
CCACTGTCACATCGAAAACGTTCGGATGGATTATATAGAATCACATTTGA
ACAGTTTGTTAAATTTGTGATAAAAGCAGGACCAGATTTTGACGATCATT
GGAGACCGCAGACCAGAATATGCCATATATGTGATCTAAAATACAAATAT
CTTGGCAAATTTGAAACTATGGAGAATGATGCTAattacattttcaaaac
attgaatgaaagtttgaaatttccaaaaatggcAGAATACAAACTGAAAA
CAACACAGATCTTAAAGAAATATTACACAGAGTTACCGAAACCTTTGATG
ACgcagatttttgaattttatagaAATGATTTTGATGCTTTTGGTTATGA
CCCAAATTATTTCTTTTAAcgtttaaagataacttttgaTGGATgctttt
gctcttttttatattgtaattaatttatcaacttaaaaaaaattttaaat
cgaAGATTTTGCAAATcgct
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008534TCONS_00008534Clytia hemisphaericatranscript
TCONS_00008535TCONS_00008535Clytia hemisphaericatranscript
TCONS_00008536TCONS_00008536Clytia hemisphaericatranscript
TCONS_00008537TCONS_00008537Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008534-proteinTCONS_00008534-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:96600..100019 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.06	0	3.23	5.06	12.28	8.8	4.26	8.29	0.45	0.25	2.05	1.19	0.39	0.35	0	0.04	0.32	0.09	0	0.16	0.57	0.27	0.04	0	0.04	0