XLOC_004969 (gene) - C. hemisphaerica

Overview
NameXLOC_004969
Unique NameXLOC_004969
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000088:397056..406589+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004969 ID=XLOC_004969|Name=XLOC_004969|organism=Clytia hemisphaerica|type=gene|length=9534bp|location=Sequence derived from alignment at sc0000088:397056..406589+ (Clytia hemisphaerica)
GAACTTCAAAAGATGAAAACAAGTATAATAATTTCtattcaagttttttt tctgtTCATCGACCATTGTTCGAGTTCACCATATTTTTTCCTCAATCATC ATCATGCAGCTCCAGAAAATAACTTCACAGAGATATACGATGGATCTTGT AGTTCTTGGACAGTCATTCCACCAAGTAAACTAGTTGCAGGTTATCCGAA AATGTGCTCTTTAGAGACGCCTAGCATTATAGCTCCCGAAGGAATTAACG AGGCGAAATCGATTTTGAGTTTATTCCAAATATCTGTTGGGAAATGCACC TTGGTTGATGGGAAGTGTCGTGAACAACTGGAAGTTGATGTTGTCATTAC TTTTAAAGATAACAAGGAAAAGTTCATACAACGTGCTCTAATGCCAAACT GGACTGTCACAGAATCAAGAGATTTTAAAATTGACTCCACAAAACAGATC ATCAGAACcataaatttaccaaaaaatcaACGGAAAATAACCAGTATCAA ATTGActataaactcaaaaaactttatagGTAGTATTTTACAAGTTTCAC TTTGGACAAATGCTTGTTTACAAACGATCGCTAGCCATGCTGTATTTCCG TATTCTGTTACACCTGGGTATACAAACGGAACATGTGTTGAGAATGCAGT ATCATTGTTACCATATTTGAAAGGTGATTGTACTTCAACTGGTTATCAAT CATTCTTGGGAATCTGTCTTTGTGGTACTGGATATATGTCATCCGGTGAT CAATGTATAGGtaagaaaatttaaagataagtcctttcttttcaaaagaa acaacAGGAGTTAAGAGTAGACTATTTTGAGGACATTTTATATGGTACAC TCCCTTCTCATCATCGTTCCCAGTgctttcttttcaaaagaaaatacagC AAATAAAGTAGAACTTTTTTGAGGGCGTTTTATTTACGCCAATGGTTCCA TATGGTACTCCCTTTTCACACTCCCACTGGAAGACTTGGCCAAAATATCG GTCAATTACCAAATTTTTTCCCCACNCCCACTGGAAGACTTGGCCAAAAT ATCGGTCAAGTACCAATTTttttccccactgaaaataatcaaataaacaa atcctcattGCAGAATATTGTACTATTCTTTTCATCCCACTGAATATTCT AActtaaaaacaatggaattaaaATCCTTAGCcataaaaacatagaaata tctATCCCCAATAAGTTTCAGTCTATGGTTTTTGACCCGACTGGNTATCT ATCCCCAATAAGTTTCAGTCTATGGTTTTTACCCCGACTGGCAAGAAAAT TCTTACGGGGTCTATGAGAAGGAGCTGTTGGTAATAgatttattaaaaga aaacttcCTAGCAAAGCTTAGGACGACTATATTGTGAAAGTGccataatt tcatagcaatatTATCCCCACAGTATAATACTCTATGCGAGTTTAAACGC CAAACATTGTCAAAAATCATTTACTTCTGTTTTTCAGCTTGTCCATCCAA CTACTTCAAAACGAGTTTTGGGTATGGCAATTGTACAAAATGTGGTATGA ACTCATACCGATTAGAGAATAGCACATCACAAAATTGCCAATGTAAAGAA GGATTTGTCCGTTACTCCAGCGAAACGTctgaattttcaaaaccttGTCA TGACTGGAACAAGATAGGTAAAAATTATCCATAACCCTAtcaccaaggat ttattatacactggatgtACAAGTAagagatttttgccgatttctcgtgt actagctatgtccgcagtaatgatattattgttcactctccttccctcat taaatgatttttcgatacatttttattgcattttttatcacaaatcactc atccaattcccaaaagagacttaaaaatttcctgtgagagtcagattctt cctctTAATTGTTAATTATAAgttgttatgacgtttcaagttgtgaaaaa gatacaaaagacgtgttgtgtataagaaatttaatgttgacaccggaaat tttcaaacttcaacctaaaaaaaaccaccttgccaccacgtgcctccaaa aaattttcataccacagtggaaccaagacactcaagtcttatgtatgtta atttcagctcttctggggacagtcttggaaagatatttccaattgaaaat ttNNNNNNNNNNNNatatttccaattgaaaatttcgtgtcactataagca ttttgtctgaatttcttgtctaatgatgtttttctcacattagatttcac aaatgtatccagcttgaaatgctagccttactttcaaactttttttctaa aaatgtgcgaaaagaaagagctagagaactttttaaaaataagaatgata aatatttttagaaatcagacatcttcgagccgccatgacagttgtccttt gcggacaaagctagaacatcaattgttttctgaaacaatgataaaataca atgatcgctctccatcgttttatgagttgtttatccagtgtatataatga tcgctctccatcgttttatgagttgtttatccagtgtataataaatcttt gctaTAACACAAAAGCCACAATCGGGCTCTTGTTGAAGCGTCCTGCTTTA TTTACAAAGTACATGGTAATGACTTAAGGGCGCTTGACTTCACTCGACTA TAGAattataaagcccaaagggctagatgtcgtattttgactgaaaaaag tGCCTACCTAAATCATGTGACATTACAacagaatttcagcgcttgaccaa tcagaagcttcgcagattttcgaaaacattgGCAACTATATttcttgcga tattcacttttatTATTTTGCCTACGATGTCTTaaagtacgacatctagc cctgcgggctttataaatctatgcacTCGACCCTGGTTTAATCGAGGTCT AATTCGATTCTCATTTCGTATAGCTTTAAAGACAAACATTGATTCCTTTC GTGTTTTAAATATTGGACTGAGGAGGAAGAAACTTCGGTCAGGAGTTCAg cttttttggaattttcatcTTAGGAATAACTTCTGTAGGGACTGAAGGGA TAGCTTCTGGTATCAAAATGCGTTATTCATTGTTGATAATccgttttatt tttttccctaGATTGCCCGAAAGATTCCTTCAAAATCAACAGTACCATTG ATGCTTGTTTAAAATGTGGTGCCAACTCGTTCAGAATATCGACTGATTCT CCTCAAAATTGCCAATGTCGTCCAGGTTTTATTAGATACaaaaatgaaac taaaatgTACGAAAAGGCTTGCcatgatttgaaagttttcGGTGAGTGAG TAACAAAGCTCTGGACATGTTTTTGAAAGAATATAAACATTTGCCTGAAA CGACAGTCGCCAGACCCTAATTATTACGTTATTTCAGATTCTTTCTGATT CGCCGTGGTTTTACGTAAGGTTCTTTTTTATCCGCACTCACTAAAATTTA CCTCTGTTTTCCGGGATTTTTTCGCTAGTTTTCTCGGGATAACCGGCATg agattaaaaaatgtttttctaaaagtaTGTAAAATCCTGTGTTTACaaaa ctgcctaactttccgaagctcatTTTCCAACTACACTAAATCGtggtctt tttccgctagaaaagtggcaaaggaatcttagtacgggaatcttatacaa aacaatggtaactcgggttttttgtCCATGATCTTATGCAACACGACGAT AATGAGGACTGGAATCTCCTTTTAAAAGATGTTTTAAAGGATTAATCAGA AAAACATTGTATTTTACAGGAAAATGTGCAAATGAAAAGATTGTAATGGC AGTTGATGAAGTTTATCATTTTACATCCATTGATATCaatgaaaaactaa atttttcctGCATCTATGGTCAAACAGACGAAGCTAAAAAGCTCAATAAA ACAACAGTATTGTTTCGGAAATGTTTGTTCTCAATTCTGTCCTATAGCAC GGAATGGCAACCACTAGATCTATCAACTTGTGGACGAAACACCAAAGGGA AAACGCTGGAAAATATCGATGTCGTAAGTCCTTCTTTTAGCCTTCTTTAT GAACCGTTTTTACTTCGAGTTGttactatttttcaaaaatcttcaaactt aGATAATTTAATACCAGTTGTTTAACCCATATATGTTTAGTCTTAACTGC CCTCGCATGTGACAAATAATGAATCATTTTTCTCAGCCACCTTTTCTCGG CCTTTCTCAAATATCAGATCGTATTCCATTGGATTTTGTTagcttgaatc ttgaattctcaCAAAATTCCAATAAGGGGTTATTGAGTCTNTGGATTTTG TTAGCTTGAATTCTCAAAACTCCAATAAGGGGTTATTGAGTCTATACGTC ATTGACAAGTTTATCTTTTGTCTTTCAGAATGATATTGATAACAAAACTG TTAACGAATTTTCGAAACAGATCAGTAACTTGACGTCCAATACTTCACTG GTAAACAACGAGCAAGCCGTTCAAAATTTAACCAAAGTCCTTGAGAAAAT TGTTGATATTCAAAACACTAGCATTGAGGTAATCTTTTTGCTACTCATCT TGGAaaaagcatagtataagaaagctgcagctttcttatactatggaaaa agtaagtaagtaagccTACGACCGCAATCGGAAGCGATCCGAAAGCTCTT CTCTCGATAGTAATCTACcagaaggtaggggagggcgccacaaTTTCTCC CTGAATTGCTCCACTTACATTTGACCCTTAAGTTAAGTTCCGTTTTGTAT TAAGTACGAAATATTTGGCATGGCCTGAGATTTAACCCACAACCTTCCGC ACAGCAGCCGAATGCTCTACCTTCGCACATTCCGCATATTTAAAAGGGTA TATGCTTACAAATAACCATAACTCGATGTTACAGGTCAAAGAAAACGTTT TGAAGATTCTGGACAACATCATTCCAATCAACGATTCAATTATTCcaaac gaaaacaaaaatcaacttcttcattTTGTTGACAAAATCACTGAAAACAT TCAACAACCTTCGTTCAATTATTCCGGTCAAAATCTCGCTGTCTCGATCC AAACGTGGAACAGGTCACAAGCAACAaatataaaaagttttgaagacAAT GATCAAATTAAGATTCAGTTTAGAAATTCACCTAAAAATGCTGACATAAG CATTAACACCACAGCGTCGATATACCTTCCTCAATCTACATATGAAAACT CACAAAATGATCTTCAAATCATATCAACAGCTTACAAGAAAGATACCTTT TTCAGTAACACAATAGAAGAAGAGAAAACAGGAGAGGATTGGGAAGTCGC GAGCTTTATAATGTCAGCATCAATTAAGGGGCAAGTCGTTGAGGGATTGA CAACACCAGTAAACATGACGTTTAAAGTGAATGGAACCAAGTATGATTTG CCAAAAGCCAAATGTGTTTTCTGGGATATAGGTAAGTCACGGAGATTGTG atatcacaaaaaaaaattatattttaatcaTTCTCTTAATATTCCCAGCC ACCTGTCTTTTTCCTAAATTGATAAAGACAAAACCTTCTTTAACGGTGTA GAAAAGGTAATACCATAGTCGTtgtaaaaacactggtctggaaggctttt gtcgctttttattgttaaaagatggagcttacgcaccaaaatcgatttat tttgcaaactttttgatcatgtgattggaaaatagaccaatcccaagagg agattttggtaatgtgatcaaaaagtatgcaaatcacAACTTgccttttg tttgtaacaaaaagaaaatgaacaaaaagctaaaacaatacattgccaga ccggggtcttttataatgactatggtaaTACCAAGTTTATGCATGTGTGT TTTTTCTGCGAGGGAGAAGGTAAGGCtctaatttgtctacatcctgactg actgaggacgacggtaaatcagtacTTTCACCGTTCTCGACTTTGCGGGT TTTTCcgaatcgcttcagtcactttaccgtcctccaaagtgcaaatacat aaacttgctaagAATTTACAGGCCTTGTAGTAATTTATATAAAATTCTTT ACTTCCATAGACGGTAACTATTGGTCAACTCGTGGTTGCAAAACCCTGGT GAATTCGAAAAACGAAGTCACTTGTGAATGCAATCATTTGACAAATTTCG CCATTCTTTTCAATGTGTATCAAGTAGATGAAGATGTGTTGAACTCGCAA GAAGTTTTGAACTACGTCAGTTTGATTGGATGTATTTTGTCAACGGGGTG TTTGGCTGCCACGCTGTTTGCTTTCTCTTGTGCACggtaagattttcaaa aaagatatacTTTTTAAAACATTCGCTGCCAATTACGAGTGGTAGAGCTG TCAGGATGCTTCAAAATGACCACAACACTTTCGATACAGAAACTTTTGCT TTCTTTAattacatttttggaatttccgTGAAATTCTAAGTCTATTTGAA GGCATATGAAGAAAACTGAGACCACATGAGCCTCTGAGAGTCCAACCTTA ATGAAATTCCAAGAggtcaaatttttactttctgAAAAGGGCTTAACACT AAACATGTTAAGTCCCTGGAAATTTTCTTCACTTATTTATCCTTTAGAAT TTAGGAATAGCTGAGCTTCAGCCAAAATCAATTGGTTCTTAAAAGAGTTT TAAcatttccaaaataaaaaaattatcgttACTTATCCTCGGTTTTAATA TTAGAGGACCTTGTAATTTTGCACCCAGCCAGAGCCACTTGCTAACACTT TTTACGCTCTAAGAATATCATAAAAAATAAGAACTGCGTTCAAGTTTTTT AATCGTTTCTGGTCATCATCTGCTCATCTTTTCAGCCACAAGCATACGAG ACGTAAAACCGCTCAACTCATTATCATCAATTTCTGTATCGCACTTACTC TTCTCCTGATCGCTTTCATGTTGACCACAAAGATAACCATAACTTCAGGT GTTCTTTGTCATACAATGTCCGGTGTCCTACATTTCCTGCTACTAGCTAC CTTCTCCTGGACAGCAACTCAAGCGTCTTTCTTGTACAAGAAAACTGTCC GCGCGACAAGAAATTTTAAAGGAGAAGACAGGAGGACATTTTACATCAGT TTCTGTCTAGCTTGGGGTGAGTTTTTTATCTTAATTTAGTCAGATACTTT TAgcctggagtcgtttataatccgtGCAATGAAAATAATATGGGTGTTTT AAGATAAGACAATATTTGTTACAGGGCAATTAATTATCAGTTTGCATAAA CTTCAATCTATGCCCCTATAACTATTTTTTTATTAGTCATGCTAGACTAT TTCTACTATACGAGGGAGCCACCTAACGCTAGTAATTCCCCTGAATTTAT ATCCCGCACTTACCCCCATTAACCCTTCTTTTTTGCGGAACATTTAGATC AAGTATATCATTCTCATGACATTGGTTAGACCCGGCTGGAGATTGACCCA ACAGAGGCTCAATCATAATGCTACAGTCGCTTATGCAACTGTGCCTTAAG TAAGCTTACTTGCAAGTTATAAgttgcatagcaaagacatgtataatttc atttttcttttcacaaTAGGTTTACCGATAGTCGTTTCAGGCGTAACTTC GAACTTTACTAGCGCACAGTTCGTTGAACCTGTCACGCATTCGTAAGTCT ATTTTCCAGACttaaaatcaatttattttctactttggtaaatatttgtt ttggtgtaaaaaaataaagtgCCTTAATTGATCGTTTTtatttatgatgt ttttaattaaattcTCTTTCATCACCAAATAACGTTTTGGTATAATAAAT GTTTTGTATTTCCATCTCTTCCAACATACACTTCAATTTTGGGTTTGAAT ATTAGACAAAAAATTCTTTGGCATTGTTAGGAAATTCTTGGTCTTAGCTT TTTTTTAGAGCGAGGGATACTTTTGATGTTAATAGAAGCAAAGGGTTTca tagacgatgttatcgtccggtatagtgatagtaaaggcgggaaaatatag AGGTATGGCGGTatacgaaaaaaaaatcgatgggagagtttcgaagactg aCACACtataccgactgtaaactctttttggcaaaaaactcgtttgCGAT TTTTTTTCGGCTTCGGGCTTATTTCAATTTACGTTCTGAAACGTAAAACG TGAAATTTCAACTAAACAGTAGCTTCACCTGAACAAAGTTATCGTCTGTG AATTTTCATTTGCTAGTGAGAAAAGATTTGATGCCGGAGGTTGACGCATt aattacacccccttctcaaagatccactgggaccccttctcaTTGAaaga attggccaaaatatcgtccccagtgaaaaattatactgtaatttttgtcc ctactgaaaataatcagataagcaaatcatCACTGCAAAATGTTGTGCTT TTTTTTCcgtccccactgaattttctggctcggaAACAATGGAATTCAGA TCCCCAGCCATGAAAAAACATAGGAATAGCAATCCcaatcgagttttggt ccgttttATACCCCCACTGGTTCAAAAAAtaccactgggtctgtgagaag gggttgcAGCTCATGGTTGTGAAAACGTGACGGGATTGATGAATTATACG ACAACTCCCGTTTTCGAGTTTGCTTTTTTAGGTGAAACTCGTCCGGAACT CGTCGAATACAATAGAATAGTCTAGCCTATCCTAAACTATAGATTCCTCC CGACTCTCTCTTAGATGCATCATGAAAGGtgatattttcatttattcGAC GATCATCCCAATCGCATGTATCATTTTGTTCAACCTCATTGTTTTCATAA TGGTCATGCGCAAAGTTCATGGTCATTTCAAAACACGTGCTTCCTTTCAA CAAAACGAAGACAAGCAGATGTGGAAAAGAGCGAAGGCTACAATGGCGTG TATGGTTCTATTAGGATTGACCTGGAGTTTCGGATTCATGGCTGTTGGTG ATTTACGTGCTCCTTTACAATGGCTGTTTTGTATCACGAACACTTTACAa ggtgtttttgtttttgttttctacGTTCTTCTCAATGATGAAGTCCGAAA AGCTTGGAATTCAAATTGGACTGAAAGCTCATTTACATCAACTTTGGTAT CACGTGCTACTAATATTCGAAAGTTGGTAGCAGAAAACGGATTAACGTTA GTTTCTTTCGCGACTAAAAGTCCGTCACCGAAACCAAAGCATAAAGCAAC AACTGAAACATAATGTAAAAAAATAGACCGAATGATAAACACTTGATGCT GAGCTAATCTTGATCCCGGCTTATTTCTGGGCTTAAAGACAAAGTTTGCA CCACAGACTGTTGTGCTCTGATTGGTATATAACAACATTAGAATCCGATT GGATGGAGTAACTTAACGAAAACAGATGGTTGAAAACATGTTTTTCTTCA CCATCCATACAGGCAGCACTCTTCCACTTGGCAGAAAGGGCAAAAATATT TAAGTTCCACCTTTCATAATAACGATACTGACAATAGAGCAACACCATTT ATAAACTTTCTATAAACCCGCTTCTTCATCTCCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008851TCONS_00008851Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008851-proteinTCONS_00008851-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:397056..406589 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
ADGRE2PREDICTED: EGF-like module-containing mucin-like hormone receptor-like 2 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04 0.02 0.05 0.01 0.09 0.11 0.04 0.08 0.25 0.53 0.12 0.1 1.34 0.98 2.35 2.36 0.24 0.7 2.18 2.3 0.94 1.14 0.37 0.43 0.7 1.13 0.12 0.02 0.91 0.91