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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008851 ID=TCONS_00008851|Name=TCONS_00008851|organism=Clytia hemisphaerica|type=transcript|length=3471bpRun BLAST on NCBI protein sequence of TCONS_00008851-protein >TCONS_00008851-protein ID=TCONS_00008851-protein|Name=TCONS_00008851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1049bp ELQKMKTSIIISIQVFFLFIDHCSSSPYFFLNHHHAAPENNFTEIYDGSCRun BLAST on NCBI transcript from alignment at sc0000088:397056..406589+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008851 ID=TCONS_00008851|Name=TCONS_00008851|organism=Clytia hemisphaerica|type=transcript|length=9534bp|location=Sequence derived from alignment at sc0000088:397056..406589+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000088:397056..406589+ >TCONS_00008851 ID=TCONS_00008851|Name=TCONS_00008851|organism=Clytia hemisphaerica|type=CDS|length=31500bp|location=Sequence derived from alignment at sc0000088:397056..406589+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008851 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 7.731e-47 Identity = 139/489 (28.43%), Postives = 240/489 (49.08%), Query Frame = 1
Query: 1600 NQLLHFVDKITENIQQPSFNYSGQ-------NLAVSIQTWNRS---QATNIKSFEDNDQIKIQFRNSPKNADISINTTASIYLPQSTYEN-SQNDLQIISTAYKKDTFFSNTIEEEKTGEDWEVASFIMSASIKGQV-VEGLTTPVNMTFKVNGTKYDLPKAKCVFWDIDGN----YWSTRGCKTLVNSKNEVTCECNHLTNFAILFNVYQVDEDVLNSQEVLNYVSLIGCILST---GCLAATLFAFSCARHKHTRRKTAQLIIINFCIALTLLLIAFMLTTKITITSGV-LCHTMSGVLHFLLLATFSWTATQASFLYKKTVRATRNFKGEDRRTFYISFCL-AWGLPIVVSGVTSNFTSAQF--VEPVTHSCIMKGDIFIYSTIIPIACII-LFNLIVFIMVMRKVHGHFKTRASFQQNEDKQMWKRAKATMACMVLLGLTWSFGFMAVGDLRAPLQWLFCITNTLQGVFVFVFYVLLNDEVRKAW 2994
N++L +++ ++ +SGQ LA+++ + + A +I S+E+ +I N P + ASIYLP+S E ++LQ I FF T + + ++++SASI + ++ L PV +T + G + + C FWD + N W++ GCK + N C+C+HLT+F +L ++ + D +N Q +L ++ GC +S+ G T AF HK R+ I+IN C AL +L + F++ + ++ V +C T + LH+ LL +F+W +A +Y V+ + + + FCL WG+P ++ +T + + + P T C +K D Y +++ C+I L NL +F V+ +++ ++ Q+ K + K TM+ LLGLTW F F A G +R +LF I NTLQG F+FVF+ ++ + VR+ W
Sbjct: 2537 NEILRIIERTGHKME-----FSGQIANLTVAGLALAVLRGDHTFDGMAFSIHSYEEGTDPEIFLGNVPVGGIL-----ASIYLPKSLTERIPLSNLQTI-----LFNFFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYGQVHCAFWDFENNNGLGGWNSSGCKVKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQ-ILALITYTGCGISSIFLGVAVVTYIAF----HK-LRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPN----YILKFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNS---VKSQIQKTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQW 2997 The following BLAST results are available for this feature:
BLAST of TCONS_00008851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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