XLOC_005030 (gene) - C. hemisphaerica

Overview
NameXLOC_005030
Unique NameXLOC_005030
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000089:237290..243723+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005030 ID=XLOC_005030|Name=XLOC_005030|organism=Clytia hemisphaerica|type=gene|length=6434bp|location=Sequence derived from alignment at sc0000089:237290..243723+ (Clytia hemisphaerica)
aaaaaaaatttactttttggGAATCTCGTTGTTgacaagaaaatcaacaa
agtaAGAAAATGTCGAATGTCGATGATCAATTTGTGAACTGTCTTTGGAC
ACAACTTGAAGAATTATTATCCTTTCCTCCAGAAGAAAGAGAACAGATAG
ATATTGAAGATGTTTCGGCTTGGTTTCGCAATCGAAGTAGCCTCTTCCAA
TCAATTGAAAAAGGTATGTGCAAGTTTTtcaaattgtgtttttttgtAAC
TTGTTCGATTGATtgactgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattttatttttctatacaGATAGTTTGTATA
GTATCATTCGCCAGGCAAGTTTAACACGTTCAAAGGCAGATCAAGTGATT
GTTCATCAAGGTGATCTTGGGGATTGGTAAGAAgctcattttaatgaaat
ttgcgAGGAAATATAACTACCATATGTTCGGACCTTAAcgagaaagattt
ttcatttagCTGGTTTTAAGGTAGTTTGCCGGATTTATCAAAATTCTGGT
TTaatcattcattcattcctAGGAAGAAGTTAGTGTTGACAATTCATTTG
TTTCTTCTCGCAAAATAATGCTAGTGAGAGAAAGTTGGTTGTTACTCAGA
ATCTGACTTTTTATGGCAGAGTACAAGTTTTTTTAAGCATAGCCAGGATG
GGATTTTGGATTGAAAACAATAGATTGTGTATCCTGAGAATTGATTGTTT
ACACTGATTCCATCATcattttttaccagtttttacaTCATATTACGGGG
TACAGTGATGGTATATGCAAAGAAGATGCCGCAAGGTGGCGAGGAAGTGG
TCCTAAGTGAAGTGCAATTTGCTAAGGGAAGTAAAGAACGGTCTCGATTC
GGACAAGAGCTTAACACACTGAGTAAGtctctattttttatttctattca
tGATGTAATTTTTGTTTAGACGGAAATTTAAAATCGACAGAAACACCCCG
ATTCTTGTCAGTtatggcaaatttaaactagaaaaaagttgttcaaaatT
TGTCACTACTGACAAAAACCTGGGTGTTTTCAAACCAAGTGAATCAAACT
TGTTCCCTGTACAGTAATCAAGATTGATGAACACCGTACCATCCAATCTG
TATAAAATTacttcaaaaatgaaagaacaTATTTTGGTACTGATTAGTTA
TTTTGTGATGTCCCCTCGATATTTTGGCTAATCCTCTTGTGTCCTCTATG
CTGACACTTTGGACTTTTTATACTTGAGTATTCACATCATTTTCATTGCC
TTAGTCATAGTCTAAACGAAAGTCCAGTTTGGAGTTCGTCAATAGATACA
CAAGGTCTTTGCGCGGTTTCTTCTAACAAAATACAATCTTCCTTTACAAA
TACAGGAGCTGGTCGGTGTTTCGGTGAACTCAGCATCGTGAGTAAGAACT
CTACAAGAATTGCCACTGTAATTGCTGATGAGCCGGCCCTCCTCATTACC
GTTAGCCGTGAGCTCTACCTATCATTGGTGGGTGAGAAACACGCTGAAGA
AATAGTGCAAAGATCAGCATTTATTAATATGCATCCTTTATTTCGCGGAT
GGTCGGCTGCGTATCGTAATCTGCTGACCGAGAATTTGCAGTACAAAAAG
TTGAAGTTTGGAGAACAAATTGTTGAGCAAGGTATGATTTATCTATTGAT
CAATTCTTTCTTCGAGTTTGAATCAGGTAGTCACACTAAACGGCATACAG
GATTACTAAacgttttttcatttttttgcagtgatcATATCATAAGCCAA
ATCAGATGTGTTTATTGCTTCATATTTTGAACTGCTGGTAGAAACTTTAC
ATTACATCATTTCATAACTCCTCGCATACCTAGGTGCTCCATTAGATTAC
ATTTATTTCGTGATTGAGGGTCAAGCCAAAGTGACGATCAATCCGATCGA
GCATCAGAAATCTTACCATCAACTGCTAAACAAACCACCCTCAAAGCTGG
TGGAGGTCGGTGAAAATGCCGCAGCTTCGGGAATCTTCGATGATGAAGAT
GCAGAAGATGATGAAAATACTATCGACCCTTATAAAAGTATGTCTTGCTT
TCATCAGATCTTGAAAAACgcatcttttataagaacataatatcagaatg
ttcttaacacTCAATCCCAtacaatccttttcatcttgattcgtaatgcg
tgcaagttaagtattgtcaataagtgtaattgacttgcaaaagcaattaa
tgcaaaggatgatgggattaaaaaactcggacaaacagtaattttgatgt
ctatttttagaatcactgcggtatgctattTGGCAACTTGTTTTTCAGGT
ATTAACACAATGCAGCGGAGAGTCTTGAAGCAAACTGAGCATTTCTACGC
ATCAGAGCTCCGTTATCGTGAACTGGATGTCTGTACGCTAGGTGCGCAAG
GGATCATTGGTGATATCGAGGCAGTTTTAGATCTTCCAAAACACATATCA
TCTGCATTTTGCCTCCAAGAAATGAGCTACTATCAAATGGATCGAACCAG
TTTCGTGAAatttataatgaagaaaaaaccaGAAACACTTGAAAAATTAC
GACGGGCAGTCTTTGAGAAATTGACTTACAGACATTCGCTGTTCGATAGC
ACCATCCCGATTTACCGTGCTTTATTGACCTTCTTTGATAAACCNTCGCT
GTTCGATAGCACCATCCCGATTTACCGTGCTTTGTTGACCTTCTTTGATA
AACCAAAACCAAAGGATAATCGTAAAAGCATCATCAAGATTTATAATGCA
AGAAAGTCCCACAAGAAACCTACTGGTATCAACTTTTTTGAGCAATTAAC
TAAAGGGAAATCCATCAATGCTAAAACTGTAAgtataaaaaacataaaaa
tataacaTGCAAGATCCCTGGGAAATTTTAGAGCTTCTTGTTTCATAAGG
GTTGTGTATCTTAAGGAAACTACTTTTAGGGAATTTGTTGAGACCCCTGT
CTCAATAACCAAGTGAAAAATTATTCGCCAGTAAAGATTTACTCAGCTAA
TTTGTGCCAATTGGAATGaacaattattttttctttcaaattctaTTTTC
AATCGTTCCGCAGCGAAAACAATCTATACATCCACTGCGAAGACCGATGC
ATGAAGCTTTGCAACCGCGTGATCAGACCACCCAACCTGCGACGGACGAT
CAAAATAAAACGGAAAATATAAATCAAACGTaagttttgaattgaaatta
aCAGAAATACTCATCTAAACCATTGACGGGATTTATAATTTTTAGTTGCA
AAACTGCAGGATGCCTTGTGAAGAAACGACGACAGGGCGACGACATAACC
CTATGTGAGTAAGTAATACAAGTAGTATAACTGTGTTGTGAAAAGACCAA
AAGCTAATAATTATCAGTTTCTCAAACTCTTAGAatacttttctttcatt
ttcaggaAACAAGGCcgaaaagaggtaagactataCATGCATGAATCATG
GCGGCGATCTCAATTAAACAtactttaagggctctgaccatagtcagaaa
attgattttagtatctgaacataaaagttatgttttagattctttaacac
ttttaacaaagaaatgCCTTTATAAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
TCtttcataaaaagtgctaagttttaatgggtaattaacctttttgtttc
gaactttttccaaactgtccgcaaagaattgaactatttcaaattttgcg
gaaaatttttctaaaaagatgtgtcaaaagttaaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacaaaaattttccgcaaaaa
cttttattgttcggtaaaagatacaccatctactgcgaaaattttttcaa
aatgttttttcttcgccgaaagtaagctcttcaaagttgaaatactcttc
ctcgcaaaagtcttcattttcttcttcatcaatttttttcaatgtaattt
ttgaattttcagatccaggaatagtttgtctaacagaaaatgtataacat
gccagggggggggtcatgcagttattatataaacactatgacaattacta
ccgtggtggtatataaaccaaaatttgggaaaacagttactctNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNagtgaaaaaattgccaaatttggcatttttgggggtggtatacaccaa
ttttgagggtaaaatcagttagtacactatgggataactgcaagggtggt
ggtgtctgaagaaattgtccaaaattgcagttattccacatagtgtcaag
gagtaactgcaagaccccccccctagttttgttggttacatcagtcagaa
aacacattttaaacacggcaattatgaaaaattcactatggtcagagccc
ttaaacagCTTTGTGGAAAGCTTTGTCTCTAAACTTGTTACGTCGAAAAc
ttaattttctatttcatttttagaaaccGAGCAAACAATTCACCCCTGAA
GAGTATAAAGAACTCAAAAAGAAACTCCAAGTGGCGGGAAAGACTGCATG
AGAATGTTGTAGgaatatatttattatttaatttgttcttttcaattatt
caacaacacaaaaaattccgaaaaatatattttgttagTAACAACTACTa
tagaagaaaaaacattttatcgATATCCATGTTTATATACCCAACATGTA
TAAGATTTGTTAATAAATACGTTCAGCATTAAAGATTGCCAATAGTGTCA
ACTCCAATAGATTGAATCATAAATTACTGGATCTGTCATTGGgaataaac
aatagaaaaataatacTAGTCCTAGCACAAAAACAATGGAAACCAATTTC
GGGTATTTACAATCAGGAATGCTACCAAAATCTGGAAATTCCATCATGTT
GCAAAAAGCATGACATATGACAGGTCCAATTAAATGTCCAGTTCGTAAAA
ATAAGAATGCCGAATAAGCACCAAATAATGTAGTGTAGGAGAATTGGAAG
AAGGATGATAATAAAACAGGTACTAATTCGTTTCCAGCTTTCAGTTTTTC
TCGAATATGATGAAAATGTGCAACACCAAAGAAAAGTGGAGCAATAAAAA
TACCAGCACTGTTTCCATAGTCAGGAACTAAAAGAGGAAGCATACATGCA
CGAAAAATAAGCTCCTCTGAAACGGGTGCCACTACTAATGTTCTATACCA
TTTCAAGTCGGTATAATACTCGGTGGAGAAAATGTCAGCTTTAACTCCTT
GAAAACCTTCCAGGACAAAATATAATACCAGTGGTCCAGCAAATAAAATT
ATAGTTAAGATTAAAGGTGCAATGGCTGCAATCAGAATTCTATTTCCATG
CAATCCAAGTAACATCCAAAAGATGTTTCTTTTGCCTTCTTCcattacaa
aataaacaaaaatcggcCCCAAAATGCAAACAATTGATACTCTTAATATC
CGCTCTTTTATAGTTTTAGGATGATCTCTTGGTAAAGTAGATTTTGTTAG
GTATAAACTTCCAACATATGAAACAGCCAAAACCAAACAAGAGATTATTG
CAAATCCTGccattatattttttaataatctACCTGAAAGTCAAAAGTTA
TGTAAATACAAGAATTTTTAtgaacattcacaaaattatttttgaatacc
attttgatcaaaaatattaATCTGGCCCTAGCCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008981TCONS_00008981Clytia hemisphaericatranscript
TCONS_00008982TCONS_00008982Clytia hemisphaericatranscript
TCONS_00008983TCONS_00008983Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008982-proteinTCONS_00008982-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:237290..243723 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.53	16.08	5.29	4.44	6.05	3.54	4.59	5.17	1.97	1.58	1.86	1.71	1.64	1.32	1.51	1.82	2.24	2.22	0.93	0.9	3.67	4.6	21.31	19.03	57.3	24.62	3.68	3.58	11.75	14.56