|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008983 ID=TCONS_00008983|Name=TCONS_00008983|organism=Clytia hemisphaerica|type=transcript|length=1498bp
gtggtatacaccaattttgagggtaaaatcagttagtacactatgggata
actgcaagggtggtggtgtctgaagaaattgtccaaaattgcagttattc
cacatagtgtcaaggagtaactgcaagaccccccccctagttttgttggt
tacatcagtcagaaaacacattttaaacacggcaattatgaaaaattcac
tatggtcagagcccttaaacagCTTTGTGGAAAGCTTTGTCTCTAAACTT
GTTACGTCGAAAActtaattttctatttcatttttagaaaccGAGCAAAC
AATTCACCCCTGAAGAGTATAAAGAACTCAAAAAGAAACTCCAAGTGGCG
GGAAAGACTGCATGAGAATGTTGTAGgaatatatttattatttaatttgt
tcttttcaattattcaacaacacaaaaaattccgaaaaatatattttgtt
agTAACAACTACTatagaagaaaaaacattttatcgATATCCATGTTTAT
ATACCCAACATGTATAAGATTTGTTAATAAATACGTTCAGCATTAAAGAT
TGCCAATAGTGTCAACTCCAATAGATTGAATCATAAATTACTGGATCTGT
CATTGGgaataaacaatagaaaaataatacTAGTCCTAGCACAAAAACAA
TGGAAACCAATTTCGGGTATTTACAATCAGGAATGCTACCAAAATCTGGA
AATTCCATCATGTTGCAAAAAGCATGACATATGACAGGTCCAATTAAATG
TCCAGTTCGTAAAAATAAGAATGCCGAATAAGCACCAAATAATGTAGTGT
AGGAGAATTGGAAGAAGGATGATAATAAAACAGGTACTAATTCGTTTCCA
GCTTTCAGTTTTTCTCGAATATGATGAAAATGTGCAACACCAAAGAAAAG
TGGAGCAATAAAAATACCAGCACTGTTTCCATAGTCAGGAACTAAAAGAG
GAAGCATACATGCACGAAAAATAAGCTCCTCTGAAACGGGTGCCACTACT
AATGTTCTATACCATTTCAAGTCGGTATAATACTCGGTGGAGAAAATGTC
AGCTTTAACTCCTTGAAAACCTTCCAGGACAAAATATAATACCAGTGGTC
CAGCAAATAAAATTATAGTTAAGATTAAAGGTGCAATGGCTGCAATCAGA
ATTCTATTTCCATGCAATCCAAGTAACATCCAAAAGATGTTTCTTTTGCC
TTCTTCcattacaaaataaacaaaaatcggcCCCAAAATGCAAACAATTG
ATACTCTTAATATCCGCTCTTTTATAGTTTTAGGATGATCTCTTGGTAAA
GTAGATTTTGTTAGGTATAAACTTCCAACATATGAAACAGCCAAAACCAA
ACAAGAGATTATTGCAAATCCTGccattatattttttaataatctACCTG
AAAGTCAAAAGTTATGTAAATACAAGAATTTTTAtgaacattcacaaaat
tatttttgaataccattttgatcaaaaatattaATCTGGCCCTAGCCT Run BLAST on NCBI transcript from alignment at sc0000089:242226..243723+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008983 ID=TCONS_00008983|Name=TCONS_00008983|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0000089:242226..243723+ (Clytia hemisphaerica)
gtggtatacaccaattttgagggtaaaatcagttagtacactatgggata
actgcaagggtggtggtgtctgaagaaattgtccaaaattgcagttattc
cacatagtgtcaaggagtaactgcaagaccccccccctagttttgttggt
tacatcagtcagaaaacacattttaaacacggcaattatgaaaaattcac
tatggtcagagcccttaaacagCTTTGTGGAAAGCTTTGTCTCTAAACTT
GTTACGTCGAAAActtaattttctatttcatttttagaaaccGAGCAAAC
AATTCACCCCTGAAGAGTATAAAGAACTCAAAAAGAAACTCCAAGTGGCG
GGAAAGACTGCATGAGAATGTTGTAGgaatatatttattatttaatttgt
tcttttcaattattcaacaacacaaaaaattccgaaaaatatattttgtt
agTAACAACTACTatagaagaaaaaacattttatcgATATCCATGTTTAT
ATACCCAACATGTATAAGATTTGTTAATAAATACGTTCAGCATTAAAGAT
TGCCAATAGTGTCAACTCCAATAGATTGAATCATAAATTACTGGATCTGT
CATTGGgaataaacaatagaaaaataatacTAGTCCTAGCACAAAAACAA
TGGAAACCAATTTCGGGTATTTACAATCAGGAATGCTACCAAAATCTGGA
AATTCCATCATGTTGCAAAAAGCATGACATATGACAGGTCCAATTAAATG
TCCAGTTCGTAAAAATAAGAATGCCGAATAAGCACCAAATAATGTAGTGT
AGGAGAATTGGAAGAAGGATGATAATAAAACAGGTACTAATTCGTTTCCA
GCTTTCAGTTTTTCTCGAATATGATGAAAATGTGCAACACCAAAGAAAAG
TGGAGCAATAAAAATACCAGCACTGTTTCCATAGTCAGGAACTAAAAGAG
GAAGCATACATGCACGAAAAATAAGCTCCTCTGAAACGGGTGCCACTACT
AATGTTCTATACCATTTCAAGTCGGTATAATACTCGGTGGAGAAAATGTC
AGCTTTAACTCCTTGAAAACCTTCCAGGACAAAATATAATACCAGTGGTC
CAGCAAATAAAATTATAGTTAAGATTAAAGGTGCAATGGCTGCAATCAGA
ATTCTATTTCCATGCAATCCAAGTAACATCCAAAAGATGTTTCTTTTGCC
TTCTTCcattacaaaataaacaaaaatcggcCCCAAAATGCAAACAATTG
ATACTCTTAATATCCGCTCTTTTATAGTTTTAGGATGATCTCTTGGTAAA
GTAGATTTTGTTAGGTATAAACTTCCAACATATGAAACAGCCAAAACCAA
ACAAGAGATTATTGCAAATCCTGccattatattttttaataatctACCTG
AAAGTCAAAAGTTATGTAAATACAAGAATTTTTAtgaacattcacaaaat
tatttttgaataccattttgatcaaaaatattaATCTGGCCCTAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008983-exon-sc0000089-1491911889:242226..243723 | TCONS_00008983-exon-sc0000089-1491911889:242226..243723 | Clytia hemisphaerica | exon |
| TCONS_00008983-exon-sc0000089-1510915933:242226..243723 | TCONS_00008983-exon-sc0000089-1510915933:242226..243723 | Clytia hemisphaerica | exon |
| TCONS_00008983-exon-sc0000089-1575043694:242226..243723 | TCONS_00008983-exon-sc0000089-1575043694:242226..243723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:242226..243723 + |
Blast
BLAST of TCONS_00008983 vs. Swiss-Prot (Human)
Match: FACE2 (CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.515e-54 Identity = 120/244 (49.18%), Postives = 151/244 (61.89%), Query Frame = -2
Query: 697 GRLLKNIMAGFAIISCLVLAVSYVGSLYLTKSTLPRDHPKTIKERILRVSIVCILGPIFVYFVMEEGKRNIFWMLLGLHGNRXX---XXXXXXXXXXXXXXAGPLVLYFV------LEGFQGVKADIFSTEYYTDLKWYRTLVVAPVSEELIFRACMLPLLVPDYGNSAGIFIAPLFFGVAHFHHIREKLKAGNELV-PVLLSSFFQFSYTTLFGAYSAFLFLRTGHLIGPVICHAFCNMMEFP 1398
G L + ++ SCL LA SYVGSLY+ KS LPRDHP IK R V +V L P+ V E LL L G R+ AA+ PL+LT+ILF GPL+ + +G + V A TD++W R V+AP++EEL+FRACMLP+L P G +F PLFFGVAHFHHI E+L+ V + LS+ FQFSYT +FGAY+AFLF+RTGHLIGPV+CH+FCN M FP
Sbjct: 27 GGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSELPRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPLLLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFP 270
The following BLAST results are available for this feature:
|
