XLOC_005090 (gene) - C. hemisphaerica

Overview
NameXLOC_005090
Unique NameXLOC_005090
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000090:12779..16494+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005090 ID=XLOC_005090|Name=XLOC_005090|organism=Clytia hemisphaerica|type=gene|length=3716bp|location=Sequence derived from alignment at sc0000090:12779..16494+ (Clytia hemisphaerica)
TTTAGATATAAAGATTAAACAACATAAAGATGAACTATAAACGCCAACGT
TTGGAGCCTGTGACCAACTACAAATCATATATTGAAATATTAATACAAGA
AAATAAACTTAGTAGCAGCGCAGAATTTGACAGTCAAAATTTGGAGAATT
TGAACCTATATCCTCAGTTTATTATGATGCCCAATGTCTTATTTTGGGAT
CTTGAAACAAAATTAAAAGACATACNGGAGCCTGTGACCAACTACAAATC
ATATATTGAAATATTAATACAAGAAAATAAACTTAGTAGCAGCGCAGAAT
TTGACAGTCAAAATTTGGAGAATTTGAACCTATATCCTCAGTTCATTATG
ATGCCCAATGTCTTATTTTGGGATCTTGAAACAAAATTAAAAGACATACA
ACTCCTTCTACCATCTTGTCCGGAATGTGGTGGTGGTTTGAAAACATTGC
CTGTAGACAAAGGAGCAAATTATTTTATGAGACAACTGTATTGCGTGAGT
GAAATTAAATTATTAGTGTCAACGAAACTCTGTTGCTCTTATACAAAGAA
GCATCAGTTTGCTGGATATGATCCAAGGATATTGGAGAAAACTAATAATA
GTGGCATAGAAATACCTTTTAAATTGTTTCACCGTGCTGGAGTCACATTA
CAGTTATCCacttttatttttgagaatatttgCAATGGTTCTCATATCAA
GAAGCTACATGAATTGATATTGAAAAATTATGGTGAAAATCTTAATAAGA
AATCTGTAAActttggtttgaaattttcacgaGAAACTATTGAAATGGAG
CATATGATAGCTTTTCTATCTTCACAGAGGCTTTGCTTACCAAGCCCACC
TCTATTAACACAATGTTTTCTCTCTTATTACAATGAACTTGAATGTGGCA
TTAAAAAAACTTGTGAAAATATTGATGTTCCAGACggctttgtttacatt
gatgatTCCTTCGATATCAGAAAATCTTCAATTACCAATACTCTtgataa
aattgtttttgtttcaaatgaTAAAGGATTGGTGATGTTTTGGAAGTTGG
TTAAAGATAAAGATTGTTTTACAGTAAGGATAACAGTTAACTTCTTTTCA
ATGTTAGGtatataccgtaagttggtctaatggtctaatccctcttctaa
ttccgacacccttctttagagataggaataatatgaaggtcagaatcaca
aatatagaaaaaacattttccttctctgattgctaagcaaagaaaattag
tttcaatcagcaattctgaccttcctattattcctatctgcatagaaggg
tgtcgaaattagaagagggaatggtgacattagaccaacttacggtatat
aCTTTATGCAAGCGGGATGCAAGCAGATTTCCGTGACAACATTATGTGTG
AGTCCATTGTTTTTATTAATAGATGGCGATAAAGCTTAAAAATTTAGtat
ggatttttgaaatttcccccAGTCTACCAGGCTTAATGTTGTTCTTTTTT
CTAACGAgaatgatattttttaatttcatcacGGATTATTTTTCAACTGA
TACTCTAATAGGAATGTCCATAAGGTCAGTGCTAAAATCGATCAATGATC
AAAAAATGATCTGAATTGACTGaattaatttttaaacaatttttattttt
ctaggaAGTTGTATCGTTCATTTCATCATATAATGAGATGCATCCGGATG
CTAAGATCAAAGGCTGTTTTACTAGCAAATGTTGTGAATGGAAACAAGAT
TTGATATCACATTTCAGTGAAGATTTTATTGTCAGAGGAAATCTACCTCT
GCTTATTGAGTGCTTGGAAGGTCGCTTGGAGGAGGAAAATTCTAATTTAG
ATTTACTTGGACATtcacaaaaagaaaacagatGCATAGCTTTCAAAGAA
AATTGGAAAGAATTCGAAAATACCTTAGctcaacaaaatttcaaagaaga
tACAGTAACAATTATTGATATAATAAAGTCTCACTTTGATAAGGATTGCT
TTCATGAAGTTGTTTATGATTTACATGATGCCAAATATTTTCACCAGATA
cattccaaattacaaaaatgGACAGGTAATTTACATTTAGGTGTGCCAAT
GATCAATGCTATGGTTTCTGTCGGATTCCATCAAATGAACATCCAAAATG
ATGTCAAATTGTGTGAGCCAGAAACTAACTCTACCAACAGTCCTTCTGAA
GACTCAAATATAATTTCCCTTATTGACTCAATTTTAGCAAATTTTCATGA
TGGAATTTGCGAGGATAAAGCCGAGGTAGACAAAGAAATTATTAATTATA
TGATGTTTTTGAAATGCTTTAAATATGTGAGCTACTGTGCCCCTGATATT
GTTCAGTCACCACATCTATTACCTCATTTTGTGTCATCAATACAACTTGT
ATCAATACCGTATTATTCAACTAATACTGACACTACCAGTAGCCAATACT
TGGACGATGTAGAGAAACTGAGATCACTGGTAAACTGGTCAAATCAAAAT
TCCACAAATGAAAATACAGAATTTTTGACATGTTTTTTGAAACATGTAAC
CACATTGAACAATGCAGACTATACAACACATCTATCAGAACTGGAAACTA
AGTTTGGCATTGACTTTGAtaatccaatagaacaaattgTTGAGAAAGTT
GGCTTACTTTTACATTCAACCAAAGCTGATGAACCATTCAGTGGAATAGC
ATTTGTTGAGAGTTTATCAAATCTGTTTTgtgttgttttcttttttgtta
cCAGTATTAAACGATTTCCTCTTATACCTGTTTACCCTAAGAAATGGGAT
TCCTTTTCACCATTTGTTTTGGTGTTGATTGAGGAAGGACATGAGATAGT
GATGCTTGATCCTTCATCTCTGGTCATCGCTCCACAGTCAAATGATAAGG
AAGAGGAGGAAAAAGTGAATTCTGAGAAACAATTTAATTGTAGATGTGGT
CGTGGAATGGCGGAGAAAAAGTTAACATCAAAATGTGTGACTATTGATGG
TTCAAAATATCCAAGCAGATGTTTATGTTTTAGAGCCGGTGAACCATGTT
CAAATTTATGTGATTGCAAAGCCTGTGCCAATCCTCATGGCGTGAGGCTG
ACATCAAAACAACAGGAGGGCGTAGTAGACCAAACTCGAATAATACGGAA
AAGGAACAAACACGAAACACAAAAGTCTATTAAGagaattcaaaatcaat
ttaaacaATTTCGTAAAACATATGGTGATAAAGAGAAATGGACTTGGGCT
GAATACATTCTTTTTGAATACGTATTGCATGAACTGGCGTTAGACTATAA
CCAAGAGAAAAACGGTCCACTAGCATGGGCAGATATATCTATTCTCATGG
ATAGATTTGTTGAGAAATATAAATCTTTTTGTCACATGCTGAAAGTTTTT
TCTCCACATTTGGAAAATCTACTTAAAGAGAAGTCGAAGAAATCGTTAGA
AAAACGCTATTTAGAACGACAAGAGTCAATCTATACAACTGCGTGATCTG
GCATGACTATTATCTAGTATTTTGTTTCACCTAGGGAACTAACttcttgt
taaaaaaattctcgaaatttctCGACAAAATTATTTCCCTTAAAAGGTAA
TTTCATTCTTTCAATGTTTTCAATAAATATATACAAATTATGGCATTTAA
TATATTATATAACTATTTATCgatcacaaaaaaaaatcaataatgaCACT
ATGTAAAATCATAATG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009081TCONS_00009081Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009081-proteinTCONS_00009081-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:12779..16494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.31	3.95	1.37	1.29	1.26	1.05	1.22	1.46	0.8	0.86	0.79	0.52	0.68	0.48	1.16	1.34	1.59	1.28	0.64	0.38	0.84	0.6	11.78	9.86	1.29	1.01	0.65	0.96	5.3	6.69