XLOC_005490 (gene) - C. hemisphaerica

Overview
NameXLOC_005490
Unique NameXLOC_005490
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000099:366754..376696+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005490 ID=XLOC_005490|Name=XLOC_005490|organism=Clytia hemisphaerica|type=gene|length=9943bp|location=Sequence derived from alignment at sc0000099:366754..376696+ (Clytia hemisphaerica)
TAATGCTGAATATCGGTGAAAGCTACGAATGCTCTGTTTCAATAATCTTG
TTGCTTCGGTGATAtcgaccaaattttgatcaGCTCAATATACATTAGAC
TCCAGATTTGTCTCAGAAAGGAGCCNAAAATCGACCAAATTTTTATCAGC
TCAATATACATTAGATTCCAGAATTGTCTCAGAAAGGAGCCTAGACAAAA
TTAGCCTACACTGGGCCTTTTAATATTGGACATTGAGAATACTCCAAAAG
TAAATAATCTTAACATTGTTGCTGCGATCTCGGCTAAATTTTTATCAGCT
CAATATACACTCTAGAATTGTCTCAAAAAAGAGCCAAGACAAAATTAGCC
TGCGCTAGGCCTACAATCTTGGAactccaaaaaaagtttttttgacagTG
TTGCTGcgatttaaatcaatttttgaaatggtATTAATGGATGGCAAAAA
CCATGAAACTTGGCTTCAAAAACGTCGGAAAACATTCGTCGCATATTTGA
TCGAGACATGCGCACTAGGCATGGAATATTCGTTGACTTTCATAACACTT
TGGATGTACCTGAAAGATGTAATACAAACAGAtgatttgaatttctttta
cAGTTCAATCTCGGCTGTCTATCTCATATCACAGGTAAAGACCTTTTTGT
CCTATATTTTCCAATATAGCCTGTAATTCCGGGGGGGgcatacttaggca
aaaataggtgttTGTTATGTGCGTGCCTTATTAAGgttattttaagtatt
tttctgaaatttgcccgtaccggtgaaacaggtctccgaccccgattcga
accaccaaatgcaagcaaccttggtttacaaacccaatgcctaaccgctt
gCGCCAACCAGACACGACAGAAaactgtcattcacaaatacttatagcgt
gtaatttacagaccttaattaagaaagctcccaaccctaccggtgcccct
acaaggatccctatgGGATCCTAAGTTATGTCACAGGGTACGAATGctcc
taagaaggccttcggccttatattggactctcgagctccaaccctaaccc
taactgataataaccgaacccccgtctaggtccgcggattgaaaaatttc
gattgcatcctggagtatgatatcgtttgctaaGCCTAAAGGTTTCATAA
ATCAGCATTAAATTGATCTCTCTTTAAGGGTCTgtttttttcacaaactc
gaGTGAAAGAAAGAGTGATGTCcactttttcagcaaaaatcagcctctct
aaaggccggtctccacttgcgcgcgctgtgaTCGCACacgtttcaacttt
tttcaaccattACGTCAGAttgcgccaatggagttgcttcattttccttt
ttaccACAATAGAGTgaaagctttgctcgaaaaggtacgatcgaagcgcg
cgcaagtggagactggCCCTAAGAGTAATGTTTGGAGGTCAAGCACGCAC
TTGCCCAGCATCTTTCAATTCAGGCTATCATTTGGTGAGTCAAGTTAATT
CTTTACGATATCATTATTCGAATTGTTGATTTCTCTTATAGGTTGCAATG
TCGGTGTTATTCGGTGCTTTATTCGACCATTATCGAAACGCCCGCCTCAT
GATCCTTATTGGAAACCTATGTATCATCTCAGGTAACATTCTCTACACTA
TACCCTTCTCTCCGTGGTATTTGTTCACTGGGCGTCTCATCTCTGGCGGT
GGTGGGTGTCTTCGCTCTATCATGACGGCCGAAATTGTCCGCGCTTATCC
CGAATTGGAATTAAGTGGGAAATTTTCATCAATCGGGCTTTCATTTGCAC
TTGGATTTGTTTTTGGACCATTACTGAATATTCCTTTCGCAAATGAAAAT
TTCTTACTTTTTGGAATCCCGATTTCGTACGCTAACGCACCTGGGCTGGT
ACTAAGTGTTATTTTCATGGTGATTCAGTTACTGGATTTTTATTTGGTTT
CGAATTTATCATTGGAATATGATATGAAAGAATTTGGTGATGGTGATAGT
GGAAGCCAATATTCAATCATTAGTAATGATAGCAGTGGCGAAGATGGCGG
TGTTGATGGTGGTGGTAAAAGTCAATATTCAATCATTGGTGATGACGGCT
ATGAGGAAAGTCAGATTAAAGATGATCTTGGTAAGTTTCATTCATTCAAT
TTTGATCGTATGCTTGCTATTACCTTGTAGGAATCATTGATATACACCCT
TTATGTCTTTAAACTTTCCACGCTTTTCTACTTTAAGAGTTattatcaag
aaaaaaaacaactacTGCATTCTCTTAAGTACTCTGAGTTTCATGTCTTT
GCACGACAATCATCAGGTCCTAATAGAAAAACTTTCGTAAGTGTcgtttt
cattgtattttctaTAATTTCAGATTCATCCAGCCGACTACTTCCTTTCA
CCATTGGCGACGAAGATTCGGATGATCAACCAAGACACCAATGGTatata
ttcttcaaaatgatacACAATGTCCAAATCTGTTTCATCCTTTTCTTATC
CCTTCTTTTCATGTATTGTATGGTTTTGTTTGATTTATGGTTACCAATGA
CTGCAACCGAATATCTCCAATATGGTGTCACTGAAATCAATTACGTCATT
CTTGGATTTGGTGCATGTGCAGTTGTCCAATTGATCGTGTTTACATTTAG
ACCCATTCCCCAACATTTACTGATTTATTTTGCGATGTTTTGTATCGTTG
GAATGATGCTAGATTATGCCATCTTTGTTGTATTGCGACATTTCCATGGC
AACCATACTGTAAACATAGTATTATTGGCCATTTGGGATTTTTTAGCAGC
AAATATCATTGCGATGGAGGAAATATTTCTTATAGTAACCCTAGCAACAA
AGGTTGGATCACGTGTTCAAACTACCACAGAAAGCATCCGATTGGCTTGT
TCAAGGACTGGGGCGATTTTAGCTCTGACGTCAGCAGCGAGTGCTTTTAG
TTGGATCACAATAACATGTTCCATTTGTATTTCTTTATTATTTATCTCCT
TAATATTTCTAATTGTAATGCACAAAAGGTTGAGTGAGGAAAGGGTTCTT
GTAAGATAGGAAATACTCTTAGATGCATATTCAACATATATTCATTCATT
CAAGGGGTTGAAAAATTCTCGAATTCTAATGAACGATAGGGCTTAATTGC
TGTTGGAGTTCGAAATTATAATTCTCCATACCCCAAAATCAAGTTTAAGA
TAAAGCTTttcagtttttggacctaccccggtggggtggaggtcatataa
attcacctctgtccgtccgtccgttcgttaccagcttttctcgagattga
atcataggaatcatttgatttttggtaaaaaggtgcaaaatggtagtagc
caaaatgtgacggatcccgattttcgaaaaaaaaaatttttgggcatatt
tgggccaaaaaacggctaaaaaacgggatttttggactttgtgaaaaatt
ggatcattaattttttctgattttttgcatgaaagtagggtaccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcata
ggtaaaagatggctcaagcagatttttgcaaaaaaatttatttggcttaa
aaaacgcatgtttatctataagaatcactattgataagcatacatgttct
tagtcaaattactcaattttttatgagatagatgtttgttttgctcacgt
gggcttacttttgaagcatatgtgtgtttagacatgaaattttggttgct
tggcgtgtttttatagaaaaactggccaaattcgatattttttataagta
cattatcaattactaaggtattagcttttctcgagattggctctttcatt
ctttaagactttttgcacaaagatgcataactataaaccctcgaatgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcggctaaaaaagggttttttggactttgtgaaatattgg
atcgttgtttttttctgattttttgcatgaaagtaggtaaaagatgggtc
aagcagatttttggaaaataacttttcagctcaaaaaaggcatgtttatc
tataggaatcactattaataagaatacatcaatgttcttagccaaattac
tcaattttttgatgagatagatgtctttttatgctcacgaagtcttgaat
ataaaagaatatttcaagagcatgaaattttcgtttctaaacgtttttct
tataagaaacaaacgactaattttaaaagatcgtcactatttgtgttctg
aacgATTGTTAAATAACGTTCATgttcacgtagatatcaattatatatgt
gttaaatgcataaccaggtaggttcataaaagtatcacttgttcctTTAG
CAGCAGTAAATATTTTCAGAAACTAATATACTGTATTAGGATCCTGATAA
GATCCGGAGGGGGGGGTGTTTGAATAATCGTTCACAACAAACAGGAAACC
CATCTTGATAAGGCACCTGCTGAGAATAAACCCTTTGGGATATTACAATG
TATtagtaggggccactatgtcgcgaaaaagcttcccgtgtggagcagct
tgtgcaaaggatTTTATgcttgaatattgttccttgaatgtaaaagatca
aaatttgagaggtggggccggctgtgaccacccgttgccatggaaactga
cgtcattggttactatggcaactaaaataaaaagtcgtcaaaattgaaaa
aaatttgtttcattcaaagaaaaaaagagcatgaaatactgataaagaaa
aaggtcacaacctatatctgaaaatgaatatatcaggagatattaaggaa
ataaggcaaaatgacgtcataaaacNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGAAAGAATACCTtccagtgaacaaaaaatattatta
cgaaaaagtctgaaaatcctttttaagaagtctatgagcaaaaattgata
tttttaaattttgcaataaattcAAACTAAATTGCTTAGTGTTCTATTGT
AATTCctcaattcaattttcaataaaatcgaAGGGAGATAAACATCAGGC
CCGGCGATACCGGGAGACCTTTTGagtaaatgagattttttctaaaattt
ctagcgaattttatctcattttgaggcTTTAGCCTCCCCatccactttta
cggttgttccgccggacCTGAACATAACATAAAACTCTCAAGCTACAAGT
TGTTAATTGCACTTTggaatttttaatttcaaaaaactgcGCACCAAAGT
CAAAAAGGTTTAATAAGAAGTGGATGAATGCATCAAAGAGTGCTTAATGA
ATGCTACGTTTTTTTCAGTTCAATTTGTTTTCTTGCACAGgtttagaatt
tttaaacatAGTCAATTATTCTGGATTGAATATGAAAAAAACGGAGAATG
CTTTACAACCAACTAGAAAAGCTTTCAAATTATGTgcggtttttttttca
ttattaagATGCATTTTTTAATACGGAAGTAAgcaattattttttgattt
gagtAATAAATATAAGCTTAGCGAGACTGAACATTTCCGTCATGAAACTG
ATAGAGATATGATTCTAATGTCATCTGACatggggatatagctcagtggt
agagcattcgactgcagatcgagaggtcccCGGTTCAAACCCGGGTGTCC
CctaagttttaaatttttttgacttagTTCATCATATTTCAGAGCTTCGT
GGTATTTAGACTAGAGTCTGAACTTTGCATTGTCGAGTGAAGAGACTACC
TTAAAGTACGAAGTGAGGGTACCAAATTTGCGTTTTTatgcggaactaat
tttggcgataGACAaccaaaaacgcgaaaattagttactgccaaaattag
ttcccttatgGCAGGAGTACTTCGTcgtaaatttggaaaaaaattaccat
aattatcaaaaataatctGACatggggatatagctcagtggtagagcatt
cgactatGAAAAATCTCTatgaaattttataagaatccgCGCAAAACTTA
CGTTCCTTTCGAATAGATACCCAATAAATATAATAATTCGcgaaaattca
gaaaatctcTATGAAATTCTATAAAAATCCGCGCAACACTTACGTTCCTT
TCGAATAGATACCCAATAAATATAATAATGAAATATTGAATACATGCCCT
ATCCACTAaagtataaatttctcaaatggacttttccagaaagaatttta
cccccactgttgaggatatttttcgaagtatcgaacccctggatatccta
ctttattagtaaagaccctgGGTATCCACTCTTAATTATATgttcaaccc
cctggatatcctctcttataaagatgcttacccctggatatcgtattttt
tacttgaaaagacactgtAACCCCTGTATATCCGCTCCCTTAAAGATATT
TAGCCCcttggatatccacttttgaacaaaaatcgttaaccccctggaaa
ataaccaaaataataataagcattattgccaaaagtttcaagataGATTG
GTGATCATCAATGGCAAAAAACTtttgcgaaaaattatttttggcggTTT
ACCTGAGGGTCAATAGGGAAAATATGGGTATTTTCAAtgaattttgacac
tttataagactggaaaagtgcttatttaaggagatataggatttggctcc
cggactagcAGTGAAGAGGTCTATCGGGATcgattttctttataaacaga
AGTTTTTACGCTCCCACGAGGGACTTGAAATTACTCTTTTGGCTGTATCT
CGATTTTTAACAATGACTTTTCGTGCAACCTCTATGGAATTGAGTGTCAT
CTGTTATgttgttaatatttttacaaatccTCGAGAGAATTGAAGACAGT
TTTTAACTGTTTCATGTCGTTGACGCAATCTCTAGATAGCAGAACTCACT
TTTTAATGATACTTGGCTTCAGTTCGTGCGTGAGTCGAATTAGTTGAAAA
TAGTGAAGCTCGAAGAAAGTGATCAAACGTTTTTGTTGAGAGGGATGCTA
AATAGTTTTGGTCAGTTGAACTTCTAAATATCAATTTCCGATTGTCACAT
GAACTATGTAATGCTGAATATCGGTGAAAGCTAATTTTGATCAGCTCAAT
ATACATTAGACTCCAGAATTGTCTCAGAAAGGAGTCTAGACAAAATTAGC
CTGCGCTAGGCATACAATCTTGGAACGCTGATAATActctaaaaataaat
aatcttGGCATTGTTACTAcgatttaaatcaatttttgaaatggtATTAA
TGGATGGCAAAAACCATGAAAGTTGGCTTCAAAAACGTCGGAAAACATTC
GTCGCATATTTGATCGAGACATGCGCACTGGGAATGGAATATTCGTTGAC
TTTCATAACACTTTGGATGTACCTGAAAGATGTAATACAAACAGatgatt
tgaatttattttacaGTTCGATCTCGGTTATCTATCTCATATCACAGGTA
AAGATTTCTTCCTATATTTTCCAATATAGCCTATCATTCCtggggggata
cttaggcaaaaatgggtgtttTTGCTATGTGTGTGCCTTATTAAGgctcg
ggtttttcaccttccaaagtctctctaagccTAAGGGTTTCAAAAATCAG
ATAAATTTAAATTGGTCTCTTCTAAGGGTCtgttttttttcacaaactcg
aGTGAAAGAAAGAGTGACGTCcactttttcagcaaaaatcagccTCTATA
AaggtcggtctccacttgcgcgcactGTGATCGCACACgcttcaactttt
ttcaaccgttacgttagatcgcgccaatggagttgcttcattttcctttt
taccACAATAGTGTgaaagctttgctcgaaaaaggtacgatcgaagcgcg
cgcaagtggagaccggccctAAGAGTAATGTTTGGAGGTCAAGCACGCAC
ATACCTAGCATCTTTCAATTCAGGCTATCATTTGGTGAGTCAAGTTGATT
CTTTACGATATCATTATTCGAATTGTTGAATTCTCTTATAGGTTGCAATG
TCGGTGTTATTCGGTGCTTTATTCGACCATCATCGAAACGCCCGCCTCAT
GATCCTTATTGGAAACTTGTGTATCATCTCAGGTAACATTCTCTACACTA
TACCCTACTCTCCGTGGTATTTGTTCACTGGGCGTCTCATCTCTGGCGGT
GGTGGGTGTCTTCGCTCTATCATGACGGCCGAAATTGTCCGCGCTTATCC
CAAATCGGAATTAAGTGGGAAATTTTCATCAATCGGGCTTTCATTTGCAC
TTGGATTCGTTTTCGGACCATTATTGAATATTCCTTTTGCAAATGAAAAT
TTCTCGCTTTTTGGATTCCCGATTTCGTACGCTAACGCACCTGGGCTGGT
ACTAAGTGTTATTTTCATGGTGATTCAATTACTGGATTTTTATTTGGTTT
CGAATTTATCATTGGAATATGATATGAAAGAATTTGGTGATGGTGATAGT
GGAAGCCAATATTCAATCATTGGTAATGATGGCGGTGGCGATGGTGGTGG
TGTTGATGGTGGTGGTGAAAGTCAATATTCAATCATTGGTGATGACGGTT
ATGAGAAAAGTCAGATTAAAGATGATCTTGGTAAGTTTcattctttcaat
tttgatcGTATGCTATTACCTTGTAGGAATCATTGATATACACCCTTTAT
GTCTTTAAACTTTCCACGCTTTTCTACTTTAAGAGTTattatcaagaaaa
aaaacaactacTGCATTCTCTTAAGTACTCTGAGTTTCATGTCTTTGCGC
GACAATCATCAGGTTCTAATAGAAAAACTTTCGTAAGTGTcgttttcatt
gtattttctaTAATTTCAGATTCATCCAGCCGACTACTTCCTTTCACCAT
TGGCGACGAAGATTCGGATGATCAACCAAGATACCAATGGTatatattct
tcaaaatgatacACAATGTCCAAATCTGTTTCATCCTTTTCTTATCCCTT
TTTTTCATGTATTGTATGGTTTTGTTTGATTTATGGTTACCAATGACTGC
AACCGAATATCTCCAATATGGTGTCACTGAAATCAATTACGTCATTCTTG
GATTTGGTGCATGTGCAGTTGTCCAATTGATCGTGTTTACATTTAGACCC
ATTCCCCAACATTTACTGATTTATTTTGCGATGTTTTGTATCGTTGGAAT
GATGCTAGATTATGCCATCTTTGTTGTATTGCGACATTTCCATGGCAACC
ATACTGTAAACATAGTATTATTGGCCATTTGGGATTTTTTAGCAGCAAAT
ATCATTGCGATGGAGGAAATATTTCTTATAGTAACCCTAGCAACAAAGGT
TGGATCACGTGTTCAAACTACCACAGAAAGCATCCGATTGGCTTGTTCAA
GGACTGGGGCGATTTTAGCTCTGACGTCAGCAGCGAGTGCTTTTAGTTGG
ATCACTATAACATGTTCCATTTGTATTTCTTTATTATTTATCTCCTTAAT
ATTTCTAATTGTAATGCACAAACGATTGAGTGAGGAAAGGGTTCTTGTAA
GATAGGAAATACTTTTAGCTGTCTAGTATACAATAAATTTATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009812TCONS_00009812Clytia hemisphaericatranscript
TCONS_00009813TCONS_00009813Clytia hemisphaericatranscript
TCONS_00009814TCONS_00009814Clytia hemisphaericatranscript
TCONS_00009815TCONS_00009815Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:366754..376696 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.63	37.37	12.85	8.96	0.17	0.13	0.19	0.03	0.19	0.33	0.04	0.13	0.1	0.02	0.03	0.05	0.3	0.3	0.13	0	1.21	0.69	37.08	29.53	0.25	0.47	2.33	2.58	23.63	28.42