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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009813 ID=TCONS_00009813|Name=TCONS_00009813|organism=Clytia hemisphaerica|type=transcript|length=1583bp
CTTGGAactccaaaaaaagtttttttgacagTGTTGCTGcgatttaaatc
aatttttgaaatggtATTAATGGATGGCAAAAACCATGAAACTTGGCTTC
AAAAACGTCGGAAAACATTCGTCGCATATTTGATCGAGACATGCGCACTA
GGCATGGAATATTCGTTGACTTTCATAACACTTTGGATGTACCTGAAAGA
TGTAATACAAACAGAtgatttgaatttcttttacAGTTCAATCTCGGCTG
TCTATCTCATATCACAGGTTGCAATGTCGGTGTTATTCGGTGCTTTATTC
GACCATTATCGAAACGCCCGCCTCATGATCCTTATTGGAAACCTATGTAT
CATCTCAGGTAACATTCTCTACACTATACCCTTCTCTCCGTGGTATTTGT
TCACTGGGCGTCTCATCTCTGGCGGTGGTGGGTGTCTTCGCTCTATCATG
ACGGCCGAAATTGTCCGCGCTTATCCCGAATTGGAATTAAGTGGGAAATT
TTCATCAATCGGGCTTTCATTTGCACTTGGATTTGTTTTTGGACCATTAC
TGAATATTCCTTTCGCAAATGAAAATTTCTTACTTTTTGGAATCCCGATT
TCGTACGCTAACGCACCTGGGCTGGTACTAAGTGTTATTTTCATGGTGAT
TCAGTTACTGGATTTTTATTTGGTTTCGAATTTATCATTGGAATATGATA
TGAAAGAATTTGGTGATGGTGATAGTGGAAGCCAATATTCAATCATTAGT
AATGATAGCAGTGGCGAAGATGGCGGTGTTGATGGTGGTGGTAAAAGTCA
ATATTCAATCATTGGTGATGACGGCTATGAGGAAAGTCAGATTAAAGATG
ATCTTGATTCATCCAGCCGACTACTTCCTTTCACCATTGGCGACGAAGAT
TCGGATGATCAACCAAGACACCAATGGTatatattcttcaaaatgatacA
CAATGTCCAAATCTGTTTCATCCTTTTCTTATCCCTTCTTTTCATGTATT
GTATGGTTTTGTTTGATTTATGGTTACCAATGACTGCAACCGAATATCTC
CAATATGGTGTCACTGAAATCAATTACGTCATTCTTGGATTTGGTGCATG
TGCAGTTGTCCAATTGATCGTGTTTACATTTAGACCCATTCCCCAACATT
TACTGATTTATTTTGCGATGTTTTGTATCGTTGGAATGATGCTAGATTAT
GCCATCTTTGTTGTATTGCGACATTTCCATGGCAACCATACTGTAAACAT
AGTATTATTGGCCATTTGGGATTTTTTAGCAGCAAATATCATTGCGATGG
AGGAAATATTTCTTATAGTAACCCTAGCAACAAAGGTTGGATCACGTGTT
CAAACTACCACAGAAAGCATCCGATTGGCTTGTTCAAGGACTGGGGCGAT
TTTAGCTCTGACGTCAGCAGCGAGTGCTTTTAGTTGGATCACAATAACAT
GTTCCATTTGTATTTCTTTATTATTTATCTCCTTAATATTTCTAATTGTA
ATGCACAAAAGGTTGAGTGAGGAAAGGGTTCTTGTAAGATAGGAAATACT
CTTAGATGCATATTCAACATATATTCATTCATT Run BLAST on NCBI transcript from alignment at sc0000099:367121..369853+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009813 ID=TCONS_00009813|Name=TCONS_00009813|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at sc0000099:367121..369853+ (Clytia hemisphaerica)
CTTGGAactccaaaaaaagtttttttgacagTGTTGCTGcgatttaaatc
aatttttgaaatggtATTAATGGATGGCAAAAACCATGAAACTTGGCTTC
AAAAACGTCGGAAAACATTCGTCGCATATTTGATCGAGACATGCGCACTA
GGCATGGAATATTCGTTGACTTTCATAACACTTTGGATGTACCTGAAAGA
TGTAATACAAACAGAtgatttgaatttcttttacAGTTCAATCTCGGCTG
TCTATCTCATATCACAGGTAAAGACCTTTTTGTCCTATATTTTCCAATAT
AGCCTGTAATTCCGGGGGGGgcatacttaggcaaaaataggtgttTGTTA
TGTGCGTGCCTTATTAAGgttattttaagtatttttctgaaatttgcccg
taccggtgaaacaggtctccgaccccgattcgaaccaccaaatgcaagca
accttggtttacaaacccaatgcctaaccgcttgCGCCAACCAGACACGA
CAGAAaactgtcattcacaaatacttatagcgtgtaatttacagacctta
attaagaaagctcccaaccctaccggtgcccctacaaggatccctatgGG
ATCCTAAGTTATGTCACAGGGTACGAATGctcctaagaaggccttcggcc
ttatattggactctcgagctccaaccctaaccctaactgataataaccga
acccccgtctaggtccgcggattgaaaaatttcgattgcatcctggagta
tgatatcgtttgctaaGCCTAAAGGTTTCATAAATCAGCATTAAATTGAT
CTCTCTTTAAGGGTCTgtttttttcacaaactcgaGTGAAAGAAAGAGTG
ATGTCcactttttcagcaaaaatcagcctctctaaaggccggtctccact
tgcgcgcgctgtgaTCGCACacgtttcaacttttttcaaccattACGTCA
GAttgcgccaatggagttgcttcattttcctttttaccACAATAGAGTga
aagctttgctcgaaaaggtacgatcgaagcgcgcgcaagtggagactggC
CCTAAGAGTAATGTTTGGAGGTCAAGCACGCACTTGCCCAGCATCTTTCA
ATTCAGGCTATCATTTGGTGAGTCAAGTTAATTCTTTACGATATCATTAT
TCGAATTGTTGATTTCTCTTATAGGTTGCAATGTCGGTGTTATTCGGTGC
TTTATTCGACCATTATCGAAACGCCCGCCTCATGATCCTTATTGGAAACC
TATGTATCATCTCAGGTAACATTCTCTACACTATACCCTTCTCTCCGTGG
TATTTGTTCACTGGGCGTCTCATCTCTGGCGGTGGTGGGTGTCTTCGCTC
TATCATGACGGCCGAAATTGTCCGCGCTTATCCCGAATTGGAATTAAGTG
GGAAATTTTCATCAATCGGGCTTTCATTTGCACTTGGATTTGTTTTTGGA
CCATTACTGAATATTCCTTTCGCAAATGAAAATTTCTTACTTTTTGGAAT
CCCGATTTCGTACGCTAACGCACCTGGGCTGGTACTAAGTGTTATTTTCA
TGGTGATTCAGTTACTGGATTTTTATTTGGTTTCGAATTTATCATTGGAA
TATGATATGAAAGAATTTGGTGATGGTGATAGTGGAAGCCAATATTCAAT
CATTAGTAATGATAGCAGTGGCGAAGATGGCGGTGTTGATGGTGGTGGTA
AAAGTCAATATTCAATCATTGGTGATGACGGCTATGAGGAAAGTCAGATT
AAAGATGATCTTGGTAAGTTTCATTCATTCAATTTTGATCGTATGCTTGC
TATTACCTTGTAGGAATCATTGATATACACCCTTTATGTCTTTAAACTTT
CCACGCTTTTCTACTTTAAGAGTTattatcaagaaaaaaaacaactacTG
CATTCTCTTAAGTACTCTGAGTTTCATGTCTTTGCACGACAATCATCAGG
TCCTAATAGAAAAACTTTCGTAAGTGTcgttttcattgtattttctaTAA
TTTCAGATTCATCCAGCCGACTACTTCCTTTCACCATTGGCGACGAAGAT
TCGGATGATCAACCAAGACACCAATGGTatatattcttcaaaatgatacA
CAATGTCCAAATCTGTTTCATCCTTTTCTTATCCCTTCTTTTCATGTATT
GTATGGTTTTGTTTGATTTATGGTTACCAATGACTGCAACCGAATATCTC
CAATATGGTGTCACTGAAATCAATTACGTCATTCTTGGATTTGGTGCATG
TGCAGTTGTCCAATTGATCGTGTTTACATTTAGACCCATTCCCCAACATT
TACTGATTTATTTTGCGATGTTTTGTATCGTTGGAATGATGCTAGATTAT
GCCATCTTTGTTGTATTGCGACATTTCCATGGCAACCATACTGTAAACAT
AGTATTATTGGCCATTTGGGATTTTTTAGCAGCAAATATCATTGCGATGG
AGGAAATATTTCTTATAGTAACCCTAGCAACAAAGGTTGGATCACGTGTT
CAAACTACCACAGAAAGCATCCGATTGGCTTGTTCAAGGACTGGGGCGAT
TTTAGCTCTGACGTCAGCAGCGAGTGCTTTTAGTTGGATCACAATAACAT
GTTCCATTTGTATTTCTTTATTATTTATCTCCTTAATATTTCTAATTGTA
ATGCACAAAAGGTTGAGTGAGGAAAGGGTTCTTGTAAGATAGGAAATACT
CTTAGATGCATATTCAACATATATTCATTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009813-exon-sc0000099-1491911889:367121..367387 | TCONS_00009813-exon-sc0000099-1491911889:367121..367387 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1510915933:367121..367387 | TCONS_00009813-exon-sc0000099-1510915933:367121..367387 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1575043694:367121..367387 | TCONS_00009813-exon-sc0000099-1575043694:367121..367387 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1491911889:368295..368883 | TCONS_00009813-exon-sc0000099-1491911889:368295..368883 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1510915933:368295..368883 | TCONS_00009813-exon-sc0000099-1510915933:368295..368883 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1575043694:368295..368883 | TCONS_00009813-exon-sc0000099-1575043694:368295..368883 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1491911889:369127..369853 | TCONS_00009813-exon-sc0000099-1491911889:369127..369853 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1510915933:369127..369853 | TCONS_00009813-exon-sc0000099-1510915933:369127..369853 | Clytia hemisphaerica | exon |
| TCONS_00009813-exon-sc0000099-1575043694:369127..369853 | TCONS_00009813-exon-sc0000099-1575043694:369127..369853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:367121..369853 + |
Blast
The following BLAST results are available for this feature:
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