XLOC_005555 (gene) - C. hemisphaerica

Overview
NameXLOC_005555
Unique NameXLOC_005555
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000100:219819..225417+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005555 ID=XLOC_005555|Name=XLOC_005555|organism=Clytia hemisphaerica|type=gene|length=5599bp|location=Sequence derived from alignment at sc0000100:219819..225417+ (Clytia hemisphaerica)
TATGAGAAGAGCTTTGCATTTTGTATTCAAAGTTGCCGACAGAAAAGCAA
CAATagatttttatagaaatgtACTTGGTATGAAGGtaacatatttttat
tttatccttgataatactttgaatttcaattttgtaCTAGGCTTCTTTAT
TTCTACTTTtgatttttgcagatttgaccCTGATGATTCTCCCAGTCGAA
CCTTAATTAGCAGTCACGATTGAAAAGCTGATTAGTATCAAAGAatagat
ttttgattatttgatGCAAAAACTTCCATCTGCTATAAATTGGATGCGTT
TGCTATTCGATTGTCCCACCTTTTGGGACTTTTTTAAAAGACGATTTAAC
TAGAAAACGAATGATAGGTTTATTGTAGGGTGTCCACTAATTTGAGGTTT
TCTATGAATTGAGAGTTTTTTGGTACATACTCTGACATATTCTGTCTTTG
TTGTATATACCAATATAGATTTTACGACATGAAGAATTCGAAAAAGGTTG
CGAAGCTGCTTGTAATGGGTAAGGGCCATTTTATTGGTTTTAATATTGTA
ATTAATTACGCATGTTGACATCTTGGGTAATTTTTGCTTTTCTATAATTA
GGGATTTATGTTAGGAACAGATCATGCTGATTACCCTCTTAAAATGTGCC
ATAGgttataaaaacttgaaaaaaccagaaaaaacatcaatttttagggT
AGGAACCATTTTTGGTTTCCCTACCCGGGTATTTAGGGTCCACCGACTGC
TCAAAGGGGCCGCCCTagtagtgatttttttctttgtcaaaagATAGTCa
tgtgacccctcattggaaagGGAATTTCATGCAGATTCCAAAAAAGGTCC
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAGTTTATAAAACCCTCCAAAGAAGTCAAGGTAATTAAACTTGAATAGG
CTGATAAAGTCAAGGAGCAGAAAACTGAAGCCtttactgaaaaagaaaag
gcaaGAATGAGTGAAGGGTCAAAAAAGTACTCATTATTGGAGACTTATCT
CAGGCCCATATAACTCAGAAGAAGAAAATACTTTAGAAGTACGTAGAAAC
AAACTTGGATGATAAACTTAAGAACAAATGATGTATAATGAAGTGAAATA
TGCCAAAATTACATGCATGTCTCTCAAGCGAACAGCTGCAGTCTTTCGTT
TGAGAAAAGATTCCGCAGAAGAGTATGTTGAAAACTTGAGCTCTTACCTT
AGTATTGCACGTTGTTGCTTTAGACAACTATTaaagatcttagaaatgtt
ATACATGGAATTGTGGGTAAGAGGGATGATAGTAAATCACTAACACTGGA
ACTCAACTCTCCTTTACAAGGGGATGAAACAATACAGTCAAAAAAACTTG
TTATATTGGGGAGCAGTAAAGTCCAAAGACTTGTGATATTGGGGAGCATG
TTATTGCCTTTTGGCATGAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTAGCAGTGAGATT
CCGAGGTGGGCGTGGCCTTAAAGGCCCCGGTAGGGAAGTCAAAAAAGGTT
TCTACCGAATTTGTTCTactttttctgaaattgtaCATGTTTTGGCACAT
TTTGAAGGGGTAATCAGTTTATGATTccaaaaatccatttttaacaTAGA
TCCCTACTATAATAACAAATGAATAAATGAGCAATTGTCAAAAGGAGgtt
ttatacacgttttttttaagaaacacacttttaagaaacatgaggctcaa
aatgcctaaaaactaagaaatatgagaatgagaaaattttaacatttttt
aactcggttttttaagaaccttccaatcaaaacaaatgttttttttcttt
gcatgaataggctgattatgtcaaagagaaacatttaaggctcaaaaggc
cgatttcttaagaaagattgaggctgcttggtaaaactagtttcttaaaa
aaaagaaaaaaaagcgtgtacagaTTTTACTAACGTAAAAAGGAGGAACT
TTAAGAAACGCATAAGAGTAAACGATTAGCGAAAGCACGTTTATAATTTA
TATCTTTTCATTCGCACTTTTTTTTAGTCCTTATCATGGGAAAAGAAGCT
ACGGAACAGAAGATAACTATTGTTGACTTTGTGTTTGCTATCCCAACTGT
CAAATAAATGAATTATCCTCATTGAATTTCTTTggtaaaaatattctcaa
aaggAGATAAATACAGACTTATTAGCGTAAAGAGAACTTTTTCACAATAA
TTAATGCAAACACATTTACATTTACACATTCCTCTACTCTTTAAGACCTT
ATGATGGAAAATGGAGCAAGACAATGGTTGGCTATGGTGCAGAAGATGAC
CATTTTGTTGTGGAACTGACTTACAATTATGGgatcaaaagttacaaatt
GGGAAATGATTTCTTGGTATGCCCtataatcaaaattgaaaatcttgcTC
TGCTAAAGTCCATTCattttaagtgtgcactaatcTTCGttttacatgct
tttttttCATGTAATGCTTCAATTTTACTGTTGAAAAGATTatgcaaaca
aacaaacaacaaacaaaaagcGCACCTAATTAGTTCAATAGCATTCATTA
TACGACtgaattaaaatttaatttttgaacaaaaactttcaaaagaattg
gaaaaaattggagTGAGAAGATTTATTCTTCTCGACTGGAACATTTAACT
AATATACTTAAAACTGGACTACTTTAATCATCCTTAACCATCCATGCACT
CAAAATTACCTTTCCAACAAGGTAGCACTTTTAATCAGACCCCAGAtcct
atttttttcatttcatttcattttcattagtATTATAACCTGTTTTTTTA
TGTTCACTTTCagttttaagaattttcaatactttatcattcttttcttt
atacagcttttattttatatccaatcaaattcaatattcaatttcttctt
ctgtGTTTAGAATATTGGCATAACCTCTAATTCTGTCATCGATAATGCCA
AGAAGGTTGGCTATGAAGCAGAGGAAATGTCTGATGGGAAAACATTACTA
GAAGCTCCAGGAGGATATCAATTTGTTGTTTGTGCTGGATCAAAAGATGG
AGGTTTGTCAGAGTTTCATAATCTTGCGGTTTATAGACTTGAGTCGTTTA
TTAGTAAAAGtacatagtgcggaaaggggtctgatccccccttcttaaat
gatcccccctTTCTTGGAACCCCCCCTCCCCAACATTTAGAAATGTCTAT
CCCCgagggttttgggctaaattttttaaggtaaagagggaagggaaaaa
gtaaagaataattaaatctggcaaatataataccactttttagtgaaaat
aaagaacttcctttcatgcagaccaaatttcataacagtgctggaaaata
atctacaatatatgtaaggCCCCCTTCTTTAACGATCCCCCCTTCTTGCT
ATccccccttcttcacttttttggaaggtgtcatcccccttTAAGAAGGG
GGGGTCCGAACTATGTAGAATAGGACATTGAGGGAAATTAGTTATTAATA
CCTcgagtttcattttgaaatacctTTAAATATCCCGAACGAAGTGAGGG
CTATTCAAAGTGTTTCAAAATGATACTAGGGGCAttaatccaaatttcac
gacaTGGGTGTTACGGTGAAGTCTCTTGAATTCatacctctataactcga
atgtctcctgaactcgaacaagtttgctGGTCTGTTCAGCTAAAAAAacc
cttataaaccttactcgaacaaaattttgtgtttcccgttcaaaaaatac
tttaatgggataaaatattttcttacactgatgtcataatgtgataaaat
ttcgcggatttgggtgtcatccgcgaaatttagtccctatgaaaatttgg
aaaggccttagccgcaaaatattttcaaacaaaactaaaaaagtgtcaaa
taaactacttttttaaatgtttactggcatcaaagaagtgctaataatgc
gtatttcaacaaccaacatgcatgatttgacagtaaaaaacacaaaatcc
TAATAGTGCCATCTGCGAAACCAAGTCCccgcaaaatcttaaaattttac
gaatgagctcaaccgcgaaatttcaaattaaagttTTATCATCGAATTGG
TTTGCAGACCGTATGTAAACAACATTTAcactaaaaaaaatattttttct
gtaaaaatcaccCTATATTtgtggaatattgcaaatcgatcTGACAATAT
GGCAGACTGCTTCACAATAAATTGATAAAGTGTATTTAACCCTTTAGTAA
GAATGAACTCAACAAAGATTTATACAATTTCAGATCCAGTTTGCACGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009908TCONS_00009908Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009908-proteinTCONS_00009908-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:219819..225417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.67	65.14	24.89	25.11	46.91	36.7	47.39	44.99	50.31	47.69	68.21	44.03	43.16	37.77	51.98	58.42	53.66	54.6	27.23	38.12	30.62	32.32	49.21	53.04	33.82	36.98	32.99	24.06	65.69	53.23