TCONS_00009908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009908
Unique NameTCONS_00009908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009908 ID=TCONS_00009908|Name=TCONS_00009908|organism=Clytia hemisphaerica|type=transcript|length=414bp
TATGAGAAGAGCTTTGCATTTTGTATTCAAAGTTGCCGACAGAAAAGCAA
CAATagatttttatagaaatgtACTTGGTATGAAGATTTTACGACATGAA
GAATTCGAAAAAGGTTGCGAAGCTGCTTGTAATGGACCTTATGATGGAAA
ATGGAGCAAGACAATGGTTGGCTATGGTGCAGAAGATGACCATTTTGTTG
TGGAACTGACTTACAATTATGGgatcaaaagttacaaattGGGAAATGAT
TTCTTGAATATTGGCATAACCTCTAATTCTGTCATCGATAATGCCAAGAA
GGTTGGCTATGAAGCAGAGGAAATGTCTGATGGGAAAACATTACTAGAAG
CTCCAGGAGGATATCAATTTGTTGTTTGTGCTGGATCAAAAGATGGAGAT
CCAGTTTGCACGTG
Run BLAST on NCBI

protein sequence of TCONS_00009908-protein

>TCONS_00009908-protein ID=TCONS_00009908-protein|Name=TCONS_00009908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MRRALHFVFKVADRKATIDFYRNVLGMKILRHEEFEKGCEAACNGPYDGK
WSKTMVGYGAEDDHFVVELTYNYGIKSYKLGNDFLNIGITSNSVIDNAKK
VGYEAEEMSDGKTLLEAPGGYQFVVCAGSKDGDPVCT
Run BLAST on NCBI

transcript from alignment at sc0000100:219819..225417+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009908 ID=TCONS_00009908|Name=TCONS_00009908|organism=Clytia hemisphaerica|type=transcript|length=5599bp|location=Sequence derived from alignment at sc0000100:219819..225417+ (Clytia hemisphaerica)
TATGAGAAGAGCTTTGCATTTTGTATTCAAAGTTGCCGACAGAAAAGCAA
CAATagatttttatagaaatgtACTTGGTATGAAGGtaacatatttttat
tttatccttgataatactttgaatttcaattttgtaCTAGGCTTCTTTAT
TTCTACTTTtgatttttgcagatttgaccCTGATGATTCTCCCAGTCGAA
CCTTAATTAGCAGTCACGATTGAAAAGCTGATTAGTATCAAAGAatagat
ttttgattatttgatGCAAAAACTTCCATCTGCTATAAATTGGATGCGTT
TGCTATTCGATTGTCCCACCTTTTGGGACTTTTTTAAAAGACGATTTAAC
TAGAAAACGAATGATAGGTTTATTGTAGGGTGTCCACTAATTTGAGGTTT
TCTATGAATTGAGAGTTTTTTGGTACATACTCTGACATATTCTGTCTTTG
TTGTATATACCAATATAGATTTTACGACATGAAGAATTCGAAAAAGGTTG
CGAAGCTGCTTGTAATGGGTAAGGGCCATTTTATTGGTTTTAATATTGTA
ATTAATTACGCATGTTGACATCTTGGGTAATTTTTGCTTTTCTATAATTA
GGGATTTATGTTAGGAACAGATCATGCTGATTACCCTCTTAAAATGTGCC
ATAGgttataaaaacttgaaaaaaccagaaaaaacatcaatttttagggT
AGGAACCATTTTTGGTTTCCCTACCCGGGTATTTAGGGTCCACCGACTGC
TCAAAGGGGCCGCCCTagtagtgatttttttctttgtcaaaagATAGTCa
tgtgacccctcattggaaagGGAATTTCATGCAGATTCCAAAAAAGGTCC
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAGTTTATAAAACCCTCCAAAGAAGTCAAGGTAATTAAACTTGAATAGG
CTGATAAAGTCAAGGAGCAGAAAACTGAAGCCtttactgaaaaagaaaag
gcaaGAATGAGTGAAGGGTCAAAAAAGTACTCATTATTGGAGACTTATCT
CAGGCCCATATAACTCAGAAGAAGAAAATACTTTAGAAGTACGTAGAAAC
AAACTTGGATGATAAACTTAAGAACAAATGATGTATAATGAAGTGAAATA
TGCCAAAATTACATGCATGTCTCTCAAGCGAACAGCTGCAGTCTTTCGTT
TGAGAAAAGATTCCGCAGAAGAGTATGTTGAAAACTTGAGCTCTTACCTT
AGTATTGCACGTTGTTGCTTTAGACAACTATTaaagatcttagaaatgtt
ATACATGGAATTGTGGGTAAGAGGGATGATAGTAAATCACTAACACTGGA
ACTCAACTCTCCTTTACAAGGGGATGAAACAATACAGTCAAAAAAACTTG
TTATATTGGGGAGCAGTAAAGTCCAAAGACTTGTGATATTGGGGAGCATG
TTATTGCCTTTTGGCATGAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTAGCAGTGAGATT
CCGAGGTGGGCGTGGCCTTAAAGGCCCCGGTAGGGAAGTCAAAAAAGGTT
TCTACCGAATTTGTTCTactttttctgaaattgtaCATGTTTTGGCACAT
TTTGAAGGGGTAATCAGTTTATGATTccaaaaatccatttttaacaTAGA
TCCCTACTATAATAACAAATGAATAAATGAGCAATTGTCAAAAGGAGgtt
ttatacacgttttttttaagaaacacacttttaagaaacatgaggctcaa
aatgcctaaaaactaagaaatatgagaatgagaaaattttaacatttttt
aactcggttttttaagaaccttccaatcaaaacaaatgttttttttcttt
gcatgaataggctgattatgtcaaagagaaacatttaaggctcaaaaggc
cgatttcttaagaaagattgaggctgcttggtaaaactagtttcttaaaa
aaaagaaaaaaaagcgtgtacagaTTTTACTAACGTAAAAAGGAGGAACT
TTAAGAAACGCATAAGAGTAAACGATTAGCGAAAGCACGTTTATAATTTA
TATCTTTTCATTCGCACTTTTTTTTAGTCCTTATCATGGGAAAAGAAGCT
ACGGAACAGAAGATAACTATTGTTGACTTTGTGTTTGCTATCCCAACTGT
CAAATAAATGAATTATCCTCATTGAATTTCTTTggtaaaaatattctcaa
aaggAGATAAATACAGACTTATTAGCGTAAAGAGAACTTTTTCACAATAA
TTAATGCAAACACATTTACATTTACACATTCCTCTACTCTTTAAGACCTT
ATGATGGAAAATGGAGCAAGACAATGGTTGGCTATGGTGCAGAAGATGAC
CATTTTGTTGTGGAACTGACTTACAATTATGGgatcaaaagttacaaatt
GGGAAATGATTTCTTGGTATGCCCtataatcaaaattgaaaatcttgcTC
TGCTAAAGTCCATTCattttaagtgtgcactaatcTTCGttttacatgct
tttttttCATGTAATGCTTCAATTTTACTGTTGAAAAGATTatgcaaaca
aacaaacaacaaacaaaaagcGCACCTAATTAGTTCAATAGCATTCATTA
TACGACtgaattaaaatttaatttttgaacaaaaactttcaaaagaattg
gaaaaaattggagTGAGAAGATTTATTCTTCTCGACTGGAACATTTAACT
AATATACTTAAAACTGGACTACTTTAATCATCCTTAACCATCCATGCACT
CAAAATTACCTTTCCAACAAGGTAGCACTTTTAATCAGACCCCAGAtcct
atttttttcatttcatttcattttcattagtATTATAACCTGTTTTTTTA
TGTTCACTTTCagttttaagaattttcaatactttatcattcttttcttt
atacagcttttattttatatccaatcaaattcaatattcaatttcttctt
ctgtGTTTAGAATATTGGCATAACCTCTAATTCTGTCATCGATAATGCCA
AGAAGGTTGGCTATGAAGCAGAGGAAATGTCTGATGGGAAAACATTACTA
GAAGCTCCAGGAGGATATCAATTTGTTGTTTGTGCTGGATCAAAAGATGG
AGGTTTGTCAGAGTTTCATAATCTTGCGGTTTATAGACTTGAGTCGTTTA
TTAGTAAAAGtacatagtgcggaaaggggtctgatccccccttcttaaat
gatcccccctTTCTTGGAACCCCCCCTCCCCAACATTTAGAAATGTCTAT
CCCCgagggttttgggctaaattttttaaggtaaagagggaagggaaaaa
gtaaagaataattaaatctggcaaatataataccactttttagtgaaaat
aaagaacttcctttcatgcagaccaaatttcataacagtgctggaaaata
atctacaatatatgtaaggCCCCCTTCTTTAACGATCCCCCCTTCTTGCT
ATccccccttcttcacttttttggaaggtgtcatcccccttTAAGAAGGG
GGGGTCCGAACTATGTAGAATAGGACATTGAGGGAAATTAGTTATTAATA
CCTcgagtttcattttgaaatacctTTAAATATCCCGAACGAAGTGAGGG
CTATTCAAAGTGTTTCAAAATGATACTAGGGGCAttaatccaaatttcac
gacaTGGGTGTTACGGTGAAGTCTCTTGAATTCatacctctataactcga
atgtctcctgaactcgaacaagtttgctGGTCTGTTCAGCTAAAAAAacc
cttataaaccttactcgaacaaaattttgtgtttcccgttcaaaaaatac
tttaatgggataaaatattttcttacactgatgtcataatgtgataaaat
ttcgcggatttgggtgtcatccgcgaaatttagtccctatgaaaatttgg
aaaggccttagccgcaaaatattttcaaacaaaactaaaaaagtgtcaaa
taaactacttttttaaatgtttactggcatcaaagaagtgctaataatgc
gtatttcaacaaccaacatgcatgatttgacagtaaaaaacacaaaatcc
TAATAGTGCCATCTGCGAAACCAAGTCCccgcaaaatcttaaaattttac
gaatgagctcaaccgcgaaatttcaaattaaagttTTATCATCGAATTGG
TTTGCAGACCGTATGTAAACAACATTTAcactaaaaaaaatattttttct
gtaaaaatcaccCTATATTtgtggaatattgcaaatcgatcTGACAATAT
GGCAGACTGCTTCACAATAAATTGATAAAGTGTATTTAACCCTTTAGTAA
GAATGAACTCAACAAAGATTTATACAATTTCAGATCCAGTTTGCACGTG

Coding sequence (CDS) from alignment at sc0000100:219819..225417+

>TCONS_00009908 ID=TCONS_00009908|Name=TCONS_00009908|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0000100:219819..225417+ (Clytia hemisphaerica)
ATGAGAAGAGCTTTGCATTTTGTATTCAAAGTTGCCGACAGAAAAGCAAC
AATagatttttatagaaatgtACTTGGTATGAAGATTTTACGACATGAAG
AATTCGAAAAAGGTTGCGAAGCTGCTTGTAATGGACCTTATGATGGAAAA
TGGAGCAAGACAATGGTTGGCTATGGTGCAGAAGATGACCATTTTGTTGT
GGAACTGACTTACAATTATGGgatcaaaagttacaaattGGGAAATGATT
TCTTGAATATTGGCATAACCTCTAATTCTGTCATCGATAATGCCAAGAAG
GTTGGCTATGAAGCAGAGGAAATGTCTGATGGGAAAACATTACTAGAAGC
TCCAGGAGGATATCAATTTGTTGTTTGTGCTGGATCAAAAGATGGAGATC
CAGTTTGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005555XLOC_005555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009908-exon-sc0000100-1491911889:219819..219903TCONS_00009908-exon-sc0000100-1491911889:219819..219903Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1510915933:219819..219903TCONS_00009908-exon-sc0000100-1510915933:219819..219903Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1575043694:219819..219903TCONS_00009908-exon-sc0000100-1575043694:219819..219903Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1491911889:220287..220336TCONS_00009908-exon-sc0000100-1491911889:220287..220336Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1510915933:220287..220336TCONS_00009908-exon-sc0000100-1510915933:220287..220336Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1575043694:220287..220336TCONS_00009908-exon-sc0000100-1575043694:220287..220336Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1491911889:223364..223484TCONS_00009908-exon-sc0000100-1491911889:223364..223484Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1510915933:223364..223484TCONS_00009908-exon-sc0000100-1510915933:223364..223484Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1575043694:223364..223484TCONS_00009908-exon-sc0000100-1575043694:223364..223484Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1491911889:224029..224170TCONS_00009908-exon-sc0000100-1491911889:224029..224170Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1510915933:224029..224170TCONS_00009908-exon-sc0000100-1510915933:224029..224170Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1575043694:224029..224170TCONS_00009908-exon-sc0000100-1575043694:224029..224170Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1491911889:225402..225417TCONS_00009908-exon-sc0000100-1491911889:225402..225417Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1510915933:225402..225417TCONS_00009908-exon-sc0000100-1510915933:225402..225417Clytia hemisphaericaexon
TCONS_00009908-exon-sc0000100-1575043694:225402..225417TCONS_00009908-exon-sc0000100-1575043694:225402..225417Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009908-proteinTCONS_00009908-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:219819..225417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.6673	65.1425	24.8856	25.1135	46.9102	36.7002	47.3922	44.9929	50.3135	47.6894	68.2054	44.0287	43.1618	37.7717	51.985	58.4244	53.6558	54.5959	27.2274	38.117	30.6207	32.3199	49.2106	53.038	33.8173	36.9801	32.9851	24.0593	65.6932	53.2317
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004360Glyas_Fos-R_dOase_dom
IPR029068Glyas_Bleomycin-R_OHBP_Dase
Blast
[Close]
BLAST of TCONS_00009908 vs. Swiss-Prot (Human)
Match: GLOD4 (Glyoxalase domain-containing protein 4 OS=Homo sapiens GN=GLOD4 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.560e-40
Identity = 74/150 (49.33%), Postives = 96/150 (64.00%), Query Frame = 2 
Query:    5 RRALHFVFKVADRKATIDFYRNVLGMKI-----LRHE----------EFEKGCEAACNGPYDGKWSKTMVGYGAEDDHFVVELTYNYGIKSYKLGNDFLNIGITSNSVIDNAKKVGYEAEEMSDGKTLLEAPGGYQFVVCAGS-KDGDPV 406
            RRALHFVFKV +R  T  FYR+VLGMK+      R E          ++ +  E + + PYDGKWSKTMVG+G EDDHFV ELTYNYG+  YKLGNDF+ I + S+  + NA+K+ +   E+++G    EAPGGY+F +   S    DPV
Sbjct:    4 RRALHFVFKVGNRFQTARFYRDVLGMKVESCSVARLECSGAISAHCSDYTRITEDSFSKPYDGKWSKTMVGFGPEDDHFVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEWPLTEVAEGVFETEAPGGYKFYLQNRSLPQSDPV 153
The following BLAST results are available for this feature:
BLAST of TCONS_00009908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLOD41.560e-4049.33Glyoxalase domain-containing protein 4 OS=Homo sap... [more]
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