XLOC_006588 (gene) - C. hemisphaerica

Overview
NameXLOC_006588
Unique NameXLOC_006588
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000132:42448..46691+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006588 ID=XLOC_006588|Name=XLOC_006588|organism=Clytia hemisphaerica|type=gene|length=4244bp|location=Sequence derived from alignment at sc0000132:42448..46691+ (Clytia hemisphaerica)
TACACAATGAATTGTGATGACTCAACACAACGTCAACAAACCTTCCACAA
AATGTGTTCCTACACAAATGAGGAGGAGAACCAATCACCTCTTTTCATAT
CAGACCACGTGACAATATCACTTCAGATGTGTATAAATGGATGGAAATAT
GGACAATCTCTAAACAGTGAGTGCAGCTCATAAAGTAAGAAACTTTCTTG
TTTCATGAAAAGCAACTTAAAGACGAAGAGCGCGCTTTTGTTGGATTGTG
TTTTTTCCTCCAAATGTAAGTATTCTTTCTTTCTCAACAAACTTGACTTT
TGACACGTTGACATTTGCATTGCGTTAAACCTGCTCATTTTTCTTAATAG
TTTCAACCAATCATGGAAAAGATGGATATTCGCCCTGCCTCAACGCCCAA
ATCACAAAAAGTCTTCTATGGAGTAGGTCACATTTTGAACGATCTCTGCG
CCAACTGCTGGTTCAGCTACGTACTTTTGTATTGGACTAAAATCGTCGGT
CTTTCCGAAACTGACGCTGGGTTGTTGTTACTGATCGGACAAGTAGCGGA
TGCCGTCAGCACCATTTTTATCGGCTACGCATGCGATCGAACAAAGTTTC
GTTGGTATGGAAAACGTAAATTGTGGCATCTGATTGGCTGTGCGTGTGTT
CTGGTCAGTTTTCCTTTCATCTTCAATGTTTGTCTCAGCTGTGAAGATGC
ATCGGAAACAAGCAAAATGTTTTATTATGCGACTTTCGTAATTCTCTTTC
AATTTGGATGGGCGTCCACTGAAAACTCCCATTTAGCGTTGATTCCAGAG
ATCGCCAAACGAACCTCCGATATCGTTCAATTGAATGCTATCAGGTAAGc
ttcatttttatgaaaagtaaGAATACCTGTTATTAATGATCTTTTAAACT
GTAAGGACAGTCCTTTCCGCATGTTTTCCATTTACACGTCATTCTTTGTC
ATCTTCAAGGTCTGGATTCTTTTTCATTTGTGGAATATTCGTTTATGGCT
TGACGTGGATTTTATTGGGTGGTGCCGAAGGCGTTGAAGTCGACCCATCA
CTCGCCCCTCAATTCAAAGTAAGAAAACTCATTTTTAATGGTTACGTCAC
ATACATTGAATTTCTCGAAACAATTAATTCATGACAGTGATATGAGCTTC
AAAAACCTCGAAGAGATCATgaacaaaaaaatctaaataaagatgACCAC
ATACTCGGCTTACTTTTCAAATAAGAAATAGCGCTTTTTTGTTATgtaaa
acaaaaaactatttcCATGCTTTACGAAGAGCCCAAGCTCCTTCACTTAC
TACATCTTGCACAAAGAACAGATCTGACAAACCTGTTGCTTTTCTTTCCA
GTACCTTTCACTCGTGGTGGTGGCAGTGGGTTTCTTTTTTGTCACCATTT
TCCACTTcggaacaaaagaagaaaaatactGCCCGCCCTCCTCCCATGAC
TTGGAATCCGCTGACACCAATTCTGAGGGATCAACAACAACGAATAAGGA
TAAGATCAAAACATGGAAAGATTGGTTGAGGGATTCTCGCTTCTACAAGA
CAGGACTTTTGTACATGTGTACTCGATTGTCTATAAACATCTTCCAATCA
TTCCTCGTCCTATATTTGACAGATGCCTTACATTTTCAAAAGGTAAACAT
CCAAATCTTGACCGATATATTTTTTAGCTTGTCAAGAACAAACACAAGGT
TAATGTAAAATAAacgaaaacttttttctatcTTCTCAGGAAGCAATAGC
ATACTTCCCATTGATCGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNatgcattgtgggattgtttcgagt
gtattacaatagaattccctcgaggaattcctaagagatttctattgtaa
tacactcgaaacaatcccacaatacatcgtttttttagaaaaatcaaaaa
ctccgataaggtctattgtaaaaaaatcagaaattttttcaacctTGAAT
TTACTCAATTTAAGgctcaaagtgccgtaaaactAGAACTTCACAGCCTC
AAAGAACATTTNGGTTTCTTTTTTGTCACCATTTTCCACTTcggaacaaa
agaagaaaaatactGTCCGCCCTCCTCCCATGACTTGGAATCCGCTGACA
CCAATTCTGAGGGATCAACAACAACGAATAAGGATAAGATCAAAACATGG
AAAGATTGGTTGAGGGATTCTCGCTTCTACAAGACAGGACTTTTGTACAT
GTGTACTCGATTGTCTATAAACATCTTCCAATCATTCCTCGTCCTATATT
TGACAGATGCCTTACATTTTCAAAAGGTAAACATCCAAATCTTGACCGAT
ATATTTTTTAGCTTGTCAAGAACAAACACAAGGTTAATGTAAAATAAacg
aaaacttttttctatcTTCTCAGGAAGCAATAGCATACTTCCCATTGATC
GTTCTAATCTGTGGCGTTGTCACTAGTTCTTTTATGCAGAAGATCACAAA
GCAGATCGGCTACCAGGTATACCCTTATCATATATTACATATTTTTTGCA
TAACTTTGATAAATTATACCTCGTGTTTGACGTAACCTTGCAAAAATCAT
CCGGTGCAATCAAGCGATTCCTGATTACTCATTAAATCACAAGAAGCCTA
CCTGCCTTAATGACTTCCTTTTGATAATTGATCATGTCGAATGAGCAGCT
TCCTTATTCCCTTCACTAGTTAACGTATGTGATTGGAGCTTCGCTAATGG
TTGCTGGAAGTGTCTGGTTGTTCGTGGTTACAAAGGAAGCGCGTCAATCA
GTTTATGGGGCGGTCAGTGTGGTGGGCATAAGTATCTCTATTATGTTAGT
GACAGCGCTTGCAAAGACCGCTGAGCTTATTGGTAAAAACAAAGAATCCG
GAGCGTTTGTATACTCGTGTATGAGTTTCTTGGACAAACTTTCCACTGGT
TTAGTGATTTTTGCCATACAAGTTTTGAAACCAACCGCTGAAAACAGGTC
AGTTTNctccaatgataccaaatttataaagattgaagaattccttcaaa
agttattggtaaatgaaaaaagagtgcacacttatcgtgaatagacttta
gctCTTATAAAAATGTACTGCGGACTAATTTATCTAACGAGGNTTTTGCC
ATACAAGTTTTGAAACCAACCGCTGAAAACAGGTCAGTTTTTTATCTTAc
ttttttaacttaaaaaataaaacgaggctaaaaatagaccttatcggagt
tttttatttttctaaaaaagcaatgcattgtgggattgtttcgagtgtat
tacaatagaattcccNAGATGACAATCATTAGTTTCTGTTTGCATTTTCA
GCTCTCTTATTTATACAaactcaatttttgattttaaagataCCAATGTA
GCGATTGTGaatggttttcaaaaatcacTCAATCAGTGGTTCCTGGTGGA
TTCGCCATGATTGGTTTCTTAGCAATGGTTCTTCTTTTCCCTTCGGAGTA
CACTTGTTTGAGGAAAAGTAAGTTATTTTCAGTTCGAGGATATTCATTTT
CCTGAATCAATTTCATTCTTTTCAAAAAGAGAAATCGTTTTAGTTTCTGG
TTGGAAGCTTTAAACGAGGAAAAGATCGCGTCACTTTGGTAACTTCCTTA
CAAAAATATGTCCTTATTAGACCGTCATCCGATATATTGTCAGAAATGGT
AACGAGATCTGACTTCACGCAAAATTAACAAAGCTACCGCAAGTACAAAC
ATGTCGAATGACACACCTATTAAATCTTCCTGctaaaacaaagcaaaaca
gacaataaattatattcaaatttactTCTCTATCCTTTCAGTATCGAATG
ATTTGAAACCATCCGTCAGTCGCTCAAACATCATATCCAATCCATCAAAC
GAATACGAAAAGCAATCACAAGAATATCAGACAAAGAACCCGTCTGACAT
GGACATTTACTATTCAACAGAAACAGAAGATCGCATCAATAATCATTTCG
ACGAAACCGTAAAGAATGTATCCTTGGGAATGCAGCAAACGAGCCTTGAT
ATTCCGCCAACCGAAAAGaatcaaaaatttgataattgctgaaacacttt
ttttagtttttaagttGATGTGTACATATGAACCAATAATATTCTGTAAA
TAAAGTTACCGTTTTTATAGTTAAAAATCtactagaaaaagaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011718TCONS_00011718Clytia hemisphaericatranscript
TCONS_00011719TCONS_00011719Clytia hemisphaericatranscript
TCONS_00011720TCONS_00011720Clytia hemisphaericatranscript
TCONS_00011721TCONS_00011721Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:42448..46691 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.04	0	0.02	0	0.04	0.15	0.68	0.06	0.23	0.22	0.15	7.97	5.67	6.09	6.19	8.39	1.11	22.43	18.65	13.57	16.3	7.46	5.71	4.41	5.25	1.29	1.16	73.06	66.17