XLOC_006759 (gene) - C. hemisphaerica

Overview
NameXLOC_006759
Unique NameXLOC_006759
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000136:237549..247103+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006759 ID=XLOC_006759|Name=XLOC_006759|organism=Clytia hemisphaerica|type=gene|length=9555bp|location=Sequence derived from alignment at sc0000136:237549..247103+ (Clytia hemisphaerica)
GAACTTTTTTCTCGTAAATTTGTCCGCCATGTTGGATTCTATTTCCCGCG
CAAATGAATTCAGCCTGTGATTTCAGGTAAACAACAGACTAGGATGGatg
gtttgttttcattttggtaTGCGTGGTTacttttattaaaagaaaaactt
aaggCTTCATCCAATGAAGTGTAAGAATTCATAGTTTCTTTCCGCGAGGT
AAAAATGACCACGGTGACATGCGATCGTTCAAGTTTCACAAAGTCTTCTG
GGTAATTTAAGACCGCTCTGCCGTTCCCTGGCACTTTCCTTTTCAAGGTG
CTAGCATTTTTATCAAGATTTGGCATTGCTTGATTCCAAAAAGTGAAGAT
GTCAACGGTCGAATCACAGAGTTATGGACCTGCTTCACAAACTTTGACCT
TCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGATACCCAAGGAAGTGAG
TTCGAATTTAACGAGTTTACATTACCATCTCAAACTCAAACGCAATCCCA
AGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTGATTAATGGCTTTCCTG
AAAACTCCACAACCATTAGCTTGAGAAAGGGAGGTCAAGAACATGAGCTC
CTCATCAGGAAACATGATAATaaggagaaaaaagaagaacccaacaaaga
caaagaagaagaaacTGCAACAAAAGCAATCACAAAAGGTGTTGaggaat
tgaattttgaagatGATGAAGAGGAGTCCTTTGCAGACAAAGAGCTTCCT
CCGCATGCTTGCAGGTATAAACTTAAATTGATATTTGATACAAGTATTAA
TAACAACAACAATCTATAGCGACCCTTCTGGCGCTCCGGAAATCTCCGGT
GTTTTCCGGTGCAGCTAAAAAACCGCCATTTTTCAAACCAGAAAATCCCG
GTGCTCTTCCGGTGCAATGATTTTCGCACACTCTAAAAAGCCGCTTAGGC
AGGGTCAGGAAAAAAAATGCGATTAGCCAGTACCAACCGAACTTTTTATT
TGATCACTGCGCAATAAAAGGTATGATTGTCTGATACAGGCTATCCAGCG
ATAGAGTTAGTCGGGAATATATGATATATGCCGGACTTTGcacaattata
aaaaattatcatgTGCATCACACATAGGAACATATcattagcgactccag
aagtcacgcaacttttgttgacgtcaaaccaaatgtttcatttttccgtg
aactttgaacccttcgaacttcttttctatgtatgctaaagcNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcggcaaattggtaaaatgccgaacgttttgcaacattttgaaaat
tgtttgccgacgggagaaaaacattttgcaacTTTCGATGaataaatgtg
tctggaaatggaggaacaaatagtcggaggctgaaactttgtatgtttat
cagaaaaagggtgaggaattcaaaaatcacaatcgctaattctaattctt
tcattttcatgtagtttttttcactNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtcacttttttgcttcttttgcatg
ggaatgtcccaaaaaaaagtttttatttctgccgaaatggattttctttt
catttggggtttctcctttcagaaattaacttattctttattcataagtt
tttgttcctccatttccagaggccccttgaaaatgggtcctaccaccttt
tttgactcatttcaaccttttccaagctaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacaa
aaacaaaggaaaccaAGAGCAACAGAAAACGAGACAAAAGAGACACGAAA
caaaaagaccaaaagatgacGTAAACCAAGCACGAGAGCAGCCAGGTTTT
GCTGCCGTGCCTCGGCAGTTACACCAGGTTACACAACTGTAAATATAACG
TATTTTTATGTATTATTTTTATCCTAaggggagccgtccatattcatttg
acaacgcaaaacgtcaaattgacgttatgagggggtgggggggttttcaa
aagttaggtttgacgttataagNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatatcattacatcata
ttttcattgtttgcgcgattgagcgaaccacatcgcacaagtgggcaaag
aaggtggtacgCCTAAAGCACGGCACCGACCTAGTGCCaagtggagcttt
taatttctttttaaataaaggtcattagttaaaagaacacatacacgCAC
GATTACAACCAAGTACGGACTTTGCGACGGAACGGGttaactttgatgaa
aaatggctacaacttttggtatacatcagtacatcgcttgacgttttctg
tggggggtgggggggttcagaggataacgtcaatttgacgttttgcgttg
tcaaatgaatatggacgggtccCCTAAAGATTAGGcagcaatcaaaaata
tgttgcgttcgggtcgtccgaccgactgtttatttacaagaaaacccGAT
TCAGAAAGTCCGTAAAATCTTCAGGTTTTTATGGCCGCTGTTCGCAGGTT
CGGATCTTTCCCATAATGGGGGGAACGGAGCAtgtctttgaatcattatt
ttttgtttacttaacccacattgagtcccgttcaagttttttcatgtacc
cttattgaaattttcatgtcaaaattcaGCAACGCGGTAGGGCCAATCCC
TGGGGGCCGAAAATGAGGGTCGCTTTAAGGTTAACACATGTGCGCACACA
TTTAGTTTGGCAAATTAAAGATGGCGGCATAAGATTTTGTTGATTGCCGA
CTTAATTCATCgggatttactagatcttaaaaatccaacaaaatttacta
ccgaccgactggatttgaagatgttttaggacccgaatggaatatatttt
tgattgctgCCTTACGAAAATGGTATCTTTCCTTTTAATTTCTTCTCTAG
TTCATTAACGAACTCGTTAAACTTTGTCAAAATATCATTTAATTTATCCA
ATTTATCACCAAGAATCTGATTTCTCTTCTAAAAAAATCTGCTAAACATG
TTTATTACATCATGTTTATACATGATAATTTGAGCGTGCGTAGTTACTTT
TTACATGATTAGCGCAGCGAGCGCTATCGCATTTATATCGCAGAAATCAT
GCACTGGAAGCACCGGAGCGTTCTGGTGTTCCGGTGCAGCTTGTTTCGGA
AAAATCTTGCACCGAAACGTTCCGGTGCatgaaaaaaattgcactttttG
CACCGGAGGTTTCCGATGCGCCGGAAGGGTCCTCATCTATTTTGCTCTCA
GGTTTTGTGTAAAAAGATTTGATATCAGTTTgcagaggtgccaactctca
cccATTGGATGTGAGACTCACACATTCCAACACTGTCTcgcccaattttt
caaagtttgcatTTCTCACGcaattttgatatttaaaaaaaaaattcttg
attttccaattttcggaaaaatttcctgattttccaattttcggaaaaat
ttccCGGTTTTTATGagtttcagaaaaatttttcccagatttccGATTTG
GTTAAGATTTCGgattttgcttcgaaatttgcATCTCACACAAAATGAAC
ATCTCAAGTAGGCAGGTCTGAGTTTTGGAAATTGCATAGATGCAACGTTG
CAAAATTTCGCATTTATTGCGTTGTCATATTTCGCATCCCTGGCCTATGG
ACAAAGACCAGGATCCCAAAATAATGTGCATTTTGAAGAACAAAccaaaa
ggaaacttttcatCCTTAGCATTTTAATTTCCTACCAAGCGATTATTCAC
AATCATTCTTGGAAGAAATGCTACTTTGTTCAAATATGCCAGATTTTGCC
TAATTTTGCTTCTATTTGCAAAAATTGGTCGTCAAAGTTGTTGTTCATAA
TTGCACACTTCCATTTGGGAACGTTGCAAAAAATTGCAGTGCACGCTGAG
GAAAGTGTTGCGAAAAAAGCAACGTTGCAGACCGTATCTATCAggctttg
tcatttgaaaattccaggcgtgtggtcaatcgcactcctaaaaagtactt
taggtgcgtgataaggagtgctatgcataactttaagtagtaaaatccaa
atttatggCGTGTGATTAATCAATCTCCTCAaagattttaggtgtgtgtg
gaggtgtgcgcgtgctatcACACGCCTCAAACGATGCAGCTTGATCTATG
CAATTTCCCGAACTGGTATGATGGTGTGACATGGTGATGAGGATAATAAA
TTTTCATGCAGAAAACATTGAAATTACAAGACTCGAAATAAtgatttcaa
gtgggtcggacaaaatgtccgatcagggttgcttgaaaaatatcattatt
cgatcggacatgaagctatttgggtcggacaatgtccaatgtccgaccgt
tatttcgagtcCTGAAATCAAGGGCATGTGAAATGAAAGGGTGCACAAAT
TAGCAATCACTTCTGTCAACAgctttaacttgggactatctgataAAATA
TGGGACAGCAACTtgaccaccatttcaccgaacctccaaagtcatttgat
taaCATAACCGCCAATCATAATAGATTGCCAATAATATGAATGCCCTACC
AGTCAGTaaaagtttttattatttttatttcctaAAATGGAAATTCTATA
CAAATTGCGAGGTTGAAAATTTCCTGTTTTGgaaatttgacttttgaaat
acTTCCTATATAAGGAAATTTTGTAGTTTTATGCAAAAACGATCTGATTG
GCTAATTTCTGACTGATTTTGTCTGGATACTCGGAATCCTTGCAGATTTT
GGAAGAAATTAGCCTTGTGAGCAAAAAAGCTGACTCGTACTGCTCAATCA
TAGTCAAAAATCTCAAGGTccttgaaaattttctaaataggaAATTAAga
tctaaagaaaatttttactgACTGGCTACTCTCACCAGGTAAGCTTTCAC
ACCTCAAAAGTCTGTTCTTCCGCAGAAAATTGTGAGATTTGTTATTGACA
CTTGGTAACTTTGACATATCAATCAATTGCGCACTACTTCCTCTTATATC
GTTTATTAGCAATCATCGATTCTGACCTTGTATTACTCCGGGGGGNCCGT
TATTTCGAATCCTGAAATCAAGGGCATGTGAAATGAAAGGGTGCACAAAT
TAGCAATCACTTCTGTCAACAgctttaacttgggactatctgataaaaca
tgggacagcaacttgaccaccatttcaccgaacctccaaagtcatttgat
taaCATAACCGCCAATCATAATAGATTGCCAATAATATGAATACCCTACC
AGTCAGTaaaagtttttattatttttatttcctaAAAAGGAAATTCTATA
CAAATTGCGAGGTTGAAAATTTCCTGTTTTGGAAATTTGACTTCTGAAAT
ACTTCCTATATAAGGAAATTTTGTAGTTTTATGCAAAAACGATCTGATTG
GATAATTTCTGACTGATTTTGTCTGGATACTCGGAATCCTTGCAGATTTT
GGAAGAAATTAGCCTTGTGAGCAAAAAAGCTGACTCGTACTGCTCAAGAT
GATCATAGTCAAAAATCTCAAGGTccttgaaaattttctaaataggaAAT
TAAgatctaaagaaaatttttactgACTGGCTACTCTCACCAGGTAAGCT
TTCACACCTCAAAAGTCTGTTCTTCCGCAGAAAATTGTGAGATTTGTTAT
TGACACTTGGTAACTTTGACATATCAATCAATTGCGCACTACTTCCTCTT
ATATCGTTTATTAGCAATCATCGATTCTGACCTTGTATTACTCCCAGGTT
TAAAGAAGGGTTGCtaaattagatgagggatgccaatattagaccaactt
actgtAATTTGAATCAGCAAGGTTCAAAATTACCAATTTAATCAGTagta
aaaatcttcatcttttttaatttttcatgtttttaaaaatctttttcctc
CTTCTACAAATTATCTGGTGTATTTTTGCCACaacaaacatcaatttgac
aTTTATGAGAGGTTTATGAGTTTTTTTCTCAGCATTTGGCAAAAAGTTAC
TTGCTGTAAGCAACTGTTTCAAAGGCCATTCTAATGAAATCTTATTTTGG
TTTGAATAGAACTTTGGCCCAatcaaagcaaaacaaaaaaattgtcaatc
tcactaaaacaaaatattgcAGTTATTGAATTTCCCTATATAAAAATCCT
GATCACGCAATCATAGgagattttagaccaatgaaatcTCTTCTTTTCCA
TGGATTAAAGTTATGTCACGAGGGAAATGGCGATTAGAAAGAGTAAAAAC
CAGTCAAATTTTTAGATTATCCTCTCacaccatggaggtataaagatttt
gtttaggttgagtgtatttttcttttccttttagATATTGTGGTATCCAT
GATCCAGCATCTGTTGTATTTGACAACACAGACAAAAAATGGTTTTGCAA
TGGTAGAGGAAATACATCTGGAAGGTAATTAGTCTTAACAAGCTAAGAGG
TACTATTATTATCATGTTCACCTGTTACCAGCTTCTCTTTTTCATTAGTT
TACAAAGTGGGTAACAGTGCCAAATATTCAAAAGCTTTTGGGTTCAAAAT
TTGTGTGTCATTttgtttgtgatttttttctgcTGACCGATTTGGGGCAC
TGACCATTCaacattttgatgttttaaaactcatatttttcttgctttag
CCACATCATCAATCATTTGGTGAGAACCAAACACAAAGAAGTTTCTTTAC
ACAAGGATGGACCACTTGGTGAAACCCAATTAGAGTGTTACAACTGTGGT
TGCAGAAATGTGTTCTTGCTTGGGTTTATTCCAGCTAAAGCTGACTCGGT
TGTTGTGCTGCTCTGTAGGTAAGTGGAGGCTTCACATGTTTATATCAAAT
TATCTAGAAGATTTCTTACTTCATTTAGCATTTTGTACAAATACAAATTA
CACTTAGGGGTTATTTTGAACTAATCAAAATCTCTTATAATTCAGGCAAC
CTTGTGCCCAACAAAGTAATAAGCAAGATACCAACTGGGATCAAAGTCAA
TGGCAACCATTGATTAATGATAGATGTTTTCTCTCTTGGTTGGTGAAAGT
TCCATCAGAGCAAGAGCAATTGAGAGCCCGTCAAATTTCTGCTGTGCAAA
TCAACAAGCTTGAAGAATTGTGGAAGGTAATAGTGTGTTATCGTGTGCTG
TCTTCTGTAATGTTTATTTTAGGCTCACTGCATATATAGTTAGTAAATTA
TGAAAATCATGGAACCCTTGGGCTTAAACTGTTGATAAAATTTGAACCTC
caatgtttgaaaaatgtttaacTTTCACTTACAAAACCAGGCAAAATATG
CATAAGCTTATTTCGccacatcaaaataaaaaagctttaagtccattttt
ttgaaaattgagttatgaccatacagatgctttacaccccattatcaatt
ttttggctcaaatccAACAAAAACCAACCAAAAGTGGCCTATTTTTAAGC
TTTTAggaaaataagaattttacttttcactttattttcaggGCAAAAAA
GCCTGAAGTCCAGAGTGGAAATAATTTTGGACTAATGGCTTTTCTAACAT
atttcaaatgttaaaagtcgattttctcaaaacaacaaaaatggacttaa
gagcttttttattttgatgcgacgatttGGAAAGAACTTTATGAGATGTA
TAATATTTATGTTTTCTCTCAGGAAAATCCAGAAGCTGTTCTTGAAGATT
TGGAGAAACCTGGTGTTGATGAAGAGCCCTCAACTGTGTTGTTAAGGTAT
GGAATGTATTGATAATCAAAACAACCATTAGTATGAAAAAGTCAAACAGA
AACCAGCTGTGTATGATCACAGCAACAAAGacaataaagaatttttttga
aaatttacaggaAAATAATGTCTGTctggccatttttcatgcccttttag
cgtcTGGTCATCAGAAGCTGCCCTcctgaaatcactaaaattttggtaaa
aacagcctttttagcNTCATGCCCTTTTAACGCCTGGTCATCGGAAGCTG
CCCTcctgaaatcactaaaattttggtaaaaacagcctttttagcagaaa
aacacaagaaaaagggGCCTTTTTGGCCATCAACAgacgctgccctgcct
ttctaaaatatggcctgtgATTTTGTTTAGATATGAAGATGCTTATCAAT
ACCAAAACATTTTTGGTCCTCTGGTCAATCATGAAGCTGAGTAtgacaaa
aaattgaaagaatcaCAAGTAAAAGAACAACCAATATTTGTTTATTTCAA
TTGTAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAGTccctatttaaaa
aaagtgattttCAATAGGCTTTTCTGCATCATTCATTGAAGtttcaagaa
tatgtgctaaTTTGCTCTGATTTGCTGggtaaaatccattttcaagGTTC
CAATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012027TCONS_00012027Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012027-proteinTCONS_00012027-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:237549..247103 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.08	34.73	44.18	45.21	135.69	108.38	97.85	104.8	106.23	122.68	205.76	166.19	280.28	346.76	179.66	217.11	107.44	158.65	187.33	189.24	163.95	162.58	89.87	125.57	240.2	222.17	101.42	163.21	72.69	92.46