TCONS_00012027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012027
Unique NameTCONS_00012027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012027 ID=TCONS_00012027|Name=TCONS_00012027|organism=Clytia hemisphaerica|type=transcript|length=1552bp
GAACTTTTTTCTCGTAAATTTGTCCGCCATGTTGGATTCTATTTCCCGCG
CAAATGAATTCAGCCTGTGATTTCAGGTAAACAACAGACTAGGATGGatg
gtttgttttcattttggtaTGCGTGGTTacttttattaaaagaaaaactt
aaggCTTCATCCAATGAAGTGTAAGAATTCATAGTTTCTTTCCGCGAGGT
AAAAATGACCACGGTGACATGCGATCGTTCAAGTTTCACAAAGTCTTCTG
GGTAATTTAAGACCGCTCTGCCGTTCCCTGGCACTTTCCTTTTCAAGGTG
CTAGCATTTTTATCAAGATTTGGCATTGCTTGATTCCAAAAAGTGAAGAT
GTCAACGGTCGAATCACAGAGTTATGGACCTGCTTCACAAACTTTGACCT
TCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGATACCCAAGGAAGTGAG
TTCGAATTTAACGAGTTTACATTACCATCTCAAACTCAAACGCAATCCCA
AGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTGATTAATGGCTTTCCTG
AAAACTCCACAACCATTAGCTTGAGAAAGGGAGGTCAAGAACATGAGCTC
CTCATCAGGAAACATGATAATaaggagaaaaaagaagaacccaacaaaga
caaagaagaagaaacTGCAACAAAAGCAATCACAAAAGGTGTTGaggaat
tgaattttgaagatGATGAAGAGGAGTCCTTTGCAGACAAAGAGCTTCCT
CCGCATGCTTGCAGATATTGTGGTATCCATGATCCAGCATCTGTTGTATT
TGACAACACAGACAAAAAATGGTTTTGCAATGGTAGAGGAAATACATCTG
GAAGCCACATCATCAATCATTTGGTGAGAACCAAACACAAAGAAGTTTCT
TTACACAAGGATGGACCACTTGGTGAAACCCAATTAGAGTGTTACAACTG
TGGTTGCAGAAATGTGTTCTTGCTTGGGTTTATTCCAGCTAAAGCTGACT
CGGTTGTTGTGCTGCTCTGTAGGCAACCTTGTGCCCAACAAAGTAATAAG
CAAGATACCAACTGGGATCAAAGTCAATGGCAACCATTGATTAATGATAG
ATGTTTTCTCTCTTGGTTGGTGAAAGTTCCATCAGAGCAAGAGCAATTGA
GAGCCCGTCAAATTTCTGCTGTGCAAATCAACAAGCTTGAAGAATTGTGG
AAGGAAAATCCAGAAGCTGTTCTTGAAGATTTGGAGAAACCTGGTGTTGA
TGAAGAGCCCTCAACTGTGTTGTTAAGATATGAAGATGCTTATCAATACC
AAAACATTTTTGGTCCTCTGGTCAATCATGAAGCTGAGTAtgacaaaaaa
ttgaaagaatcaCAAGTAAAAGAACAACCAATATTTGTTTATTTCAATTG
TAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAGTccctatttaaaaaaa
gtgattttCAATAGGCTTTTCTGCATCATTCATTGAAGtttcaagaatat
gtgctaaTTTGCTCTGATTTGCTGggtaaaatccattttcaagGTTCCAA
TA
Run BLAST on NCBI

protein sequence of TCONS_00012027-protein

>TCONS_00012027-protein ID=TCONS_00012027-protein|Name=TCONS_00012027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MSTVESQSYGPASQTLTFLETEEADFGADTQGSEFEFNEFTLPSQTQTQS
QASQLDQASQPLINGFPENSTTISLRKGGQEHELLIRKHDNKEKKEEPNK
DKEEETATKAITKGVEELNFEDDEEESFADKELPPHACRYCGIHDPASVV
FDNTDKKWFCNGRGNTSGSHIINHLVRTKHKEVSLHKDGPLGETQLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDTNWDQSQWQPLIND
RCFLSWLVKVPSEQEQLRARQISAVQINKLEELWKENPEAVLEDLEKPGV
DEEPSTVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQVKEQPIFVYFN
CSDFVPSPYFKKSLFKKSDFQ
Run BLAST on NCBI

transcript from alignment at sc0000136:237549..247103+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012027 ID=TCONS_00012027|Name=TCONS_00012027|organism=Clytia hemisphaerica|type=transcript|length=9555bp|location=Sequence derived from alignment at sc0000136:237549..247103+ (Clytia hemisphaerica)
GAACTTTTTTCTCGTAAATTTGTCCGCCATGTTGGATTCTATTTCCCGCG
CAAATGAATTCAGCCTGTGATTTCAGGTAAACAACAGACTAGGATGGatg
gtttgttttcattttggtaTGCGTGGTTacttttattaaaagaaaaactt
aaggCTTCATCCAATGAAGTGTAAGAATTCATAGTTTCTTTCCGCGAGGT
AAAAATGACCACGGTGACATGCGATCGTTCAAGTTTCACAAAGTCTTCTG
GGTAATTTAAGACCGCTCTGCCGTTCCCTGGCACTTTCCTTTTCAAGGTG
CTAGCATTTTTATCAAGATTTGGCATTGCTTGATTCCAAAAAGTGAAGAT
GTCAACGGTCGAATCACAGAGTTATGGACCTGCTTCACAAACTTTGACCT
TCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGATACCCAAGGAAGTGAG
TTCGAATTTAACGAGTTTACATTACCATCTCAAACTCAAACGCAATCCCA
AGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTGATTAATGGCTTTCCTG
AAAACTCCACAACCATTAGCTTGAGAAAGGGAGGTCAAGAACATGAGCTC
CTCATCAGGAAACATGATAATaaggagaaaaaagaagaacccaacaaaga
caaagaagaagaaacTGCAACAAAAGCAATCACAAAAGGTGTTGaggaat
tgaattttgaagatGATGAAGAGGAGTCCTTTGCAGACAAAGAGCTTCCT
CCGCATGCTTGCAGGTATAAACTTAAATTGATATTTGATACAAGTATTAA
TAACAACAACAATCTATAGCGACCCTTCTGGCGCTCCGGAAATCTCCGGT
GTTTTCCGGTGCAGCTAAAAAACCGCCATTTTTCAAACCAGAAAATCCCG
GTGCTCTTCCGGTGCAATGATTTTCGCACACTCTAAAAAGCCGCTTAGGC
AGGGTCAGGAAAAAAAATGCGATTAGCCAGTACCAACCGAACTTTTTATT
TGATCACTGCGCAATAAAAGGTATGATTGTCTGATACAGGCTATCCAGCG
ATAGAGTTAGTCGGGAATATATGATATATGCCGGACTTTGcacaattata
aaaaattatcatgTGCATCACACATAGGAACATATcattagcgactccag
aagtcacgcaacttttgttgacgtcaaaccaaatgtttcatttttccgtg
aactttgaacccttcgaacttcttttctatgtatgctaaagcNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcggcaaattggtaaaatgccgaacgttttgcaacattttgaaaat
tgtttgccgacgggagaaaaacattttgcaacTTTCGATGaataaatgtg
tctggaaatggaggaacaaatagtcggaggctgaaactttgtatgtttat
cagaaaaagggtgaggaattcaaaaatcacaatcgctaattctaattctt
tcattttcatgtagtttttttcactNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtcacttttttgcttcttttgcatg
ggaatgtcccaaaaaaaagtttttatttctgccgaaatggattttctttt
catttggggtttctcctttcagaaattaacttattctttattcataagtt
tttgttcctccatttccagaggccccttgaaaatgggtcctaccaccttt
tttgactcatttcaaccttttccaagctaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacaa
aaacaaaggaaaccaAGAGCAACAGAAAACGAGACAAAAGAGACACGAAA
caaaaagaccaaaagatgacGTAAACCAAGCACGAGAGCAGCCAGGTTTT
GCTGCCGTGCCTCGGCAGTTACACCAGGTTACACAACTGTAAATATAACG
TATTTTTATGTATTATTTTTATCCTAaggggagccgtccatattcatttg
acaacgcaaaacgtcaaattgacgttatgagggggtgggggggttttcaa
aagttaggtttgacgttataagNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatatcattacatcata
ttttcattgtttgcgcgattgagcgaaccacatcgcacaagtgggcaaag
aaggtggtacgCCTAAAGCACGGCACCGACCTAGTGCCaagtggagcttt
taatttctttttaaataaaggtcattagttaaaagaacacatacacgCAC
GATTACAACCAAGTACGGACTTTGCGACGGAACGGGttaactttgatgaa
aaatggctacaacttttggtatacatcagtacatcgcttgacgttttctg
tggggggtgggggggttcagaggataacgtcaatttgacgttttgcgttg
tcaaatgaatatggacgggtccCCTAAAGATTAGGcagcaatcaaaaata
tgttgcgttcgggtcgtccgaccgactgtttatttacaagaaaacccGAT
TCAGAAAGTCCGTAAAATCTTCAGGTTTTTATGGCCGCTGTTCGCAGGTT
CGGATCTTTCCCATAATGGGGGGAACGGAGCAtgtctttgaatcattatt
ttttgtttacttaacccacattgagtcccgttcaagttttttcatgtacc
cttattgaaattttcatgtcaaaattcaGCAACGCGGTAGGGCCAATCCC
TGGGGGCCGAAAATGAGGGTCGCTTTAAGGTTAACACATGTGCGCACACA
TTTAGTTTGGCAAATTAAAGATGGCGGCATAAGATTTTGTTGATTGCCGA
CTTAATTCATCgggatttactagatcttaaaaatccaacaaaatttacta
ccgaccgactggatttgaagatgttttaggacccgaatggaatatatttt
tgattgctgCCTTACGAAAATGGTATCTTTCCTTTTAATTTCTTCTCTAG
TTCATTAACGAACTCGTTAAACTTTGTCAAAATATCATTTAATTTATCCA
ATTTATCACCAAGAATCTGATTTCTCTTCTAAAAAAATCTGCTAAACATG
TTTATTACATCATGTTTATACATGATAATTTGAGCGTGCGTAGTTACTTT
TTACATGATTAGCGCAGCGAGCGCTATCGCATTTATATCGCAGAAATCAT
GCACTGGAAGCACCGGAGCGTTCTGGTGTTCCGGTGCAGCTTGTTTCGGA
AAAATCTTGCACCGAAACGTTCCGGTGCatgaaaaaaattgcactttttG
CACCGGAGGTTTCCGATGCGCCGGAAGGGTCCTCATCTATTTTGCTCTCA
GGTTTTGTGTAAAAAGATTTGATATCAGTTTgcagaggtgccaactctca
cccATTGGATGTGAGACTCACACATTCCAACACTGTCTcgcccaattttt
caaagtttgcatTTCTCACGcaattttgatatttaaaaaaaaaattcttg
attttccaattttcggaaaaatttcctgattttccaattttcggaaaaat
ttccCGGTTTTTATGagtttcagaaaaatttttcccagatttccGATTTG
GTTAAGATTTCGgattttgcttcgaaatttgcATCTCACACAAAATGAAC
ATCTCAAGTAGGCAGGTCTGAGTTTTGGAAATTGCATAGATGCAACGTTG
CAAAATTTCGCATTTATTGCGTTGTCATATTTCGCATCCCTGGCCTATGG
ACAAAGACCAGGATCCCAAAATAATGTGCATTTTGAAGAACAAAccaaaa
ggaaacttttcatCCTTAGCATTTTAATTTCCTACCAAGCGATTATTCAC
AATCATTCTTGGAAGAAATGCTACTTTGTTCAAATATGCCAGATTTTGCC
TAATTTTGCTTCTATTTGCAAAAATTGGTCGTCAAAGTTGTTGTTCATAA
TTGCACACTTCCATTTGGGAACGTTGCAAAAAATTGCAGTGCACGCTGAG
GAAAGTGTTGCGAAAAAAGCAACGTTGCAGACCGTATCTATCAggctttg
tcatttgaaaattccaggcgtgtggtcaatcgcactcctaaaaagtactt
taggtgcgtgataaggagtgctatgcataactttaagtagtaaaatccaa
atttatggCGTGTGATTAATCAATCTCCTCAaagattttaggtgtgtgtg
gaggtgtgcgcgtgctatcACACGCCTCAAACGATGCAGCTTGATCTATG
CAATTTCCCGAACTGGTATGATGGTGTGACATGGTGATGAGGATAATAAA
TTTTCATGCAGAAAACATTGAAATTACAAGACTCGAAATAAtgatttcaa
gtgggtcggacaaaatgtccgatcagggttgcttgaaaaatatcattatt
cgatcggacatgaagctatttgggtcggacaatgtccaatgtccgaccgt
tatttcgagtcCTGAAATCAAGGGCATGTGAAATGAAAGGGTGCACAAAT
TAGCAATCACTTCTGTCAACAgctttaacttgggactatctgataAAATA
TGGGACAGCAACTtgaccaccatttcaccgaacctccaaagtcatttgat
taaCATAACCGCCAATCATAATAGATTGCCAATAATATGAATGCCCTACC
AGTCAGTaaaagtttttattatttttatttcctaAAATGGAAATTCTATA
CAAATTGCGAGGTTGAAAATTTCCTGTTTTGgaaatttgacttttgaaat
acTTCCTATATAAGGAAATTTTGTAGTTTTATGCAAAAACGATCTGATTG
GCTAATTTCTGACTGATTTTGTCTGGATACTCGGAATCCTTGCAGATTTT
GGAAGAAATTAGCCTTGTGAGCAAAAAAGCTGACTCGTACTGCTCAATCA
TAGTCAAAAATCTCAAGGTccttgaaaattttctaaataggaAATTAAga
tctaaagaaaatttttactgACTGGCTACTCTCACCAGGTAAGCTTTCAC
ACCTCAAAAGTCTGTTCTTCCGCAGAAAATTGTGAGATTTGTTATTGACA
CTTGGTAACTTTGACATATCAATCAATTGCGCACTACTTCCTCTTATATC
GTTTATTAGCAATCATCGATTCTGACCTTGTATTACTCCGGGGGGNCCGT
TATTTCGAATCCTGAAATCAAGGGCATGTGAAATGAAAGGGTGCACAAAT
TAGCAATCACTTCTGTCAACAgctttaacttgggactatctgataaaaca
tgggacagcaacttgaccaccatttcaccgaacctccaaagtcatttgat
taaCATAACCGCCAATCATAATAGATTGCCAATAATATGAATACCCTACC
AGTCAGTaaaagtttttattatttttatttcctaAAAAGGAAATTCTATA
CAAATTGCGAGGTTGAAAATTTCCTGTTTTGGAAATTTGACTTCTGAAAT
ACTTCCTATATAAGGAAATTTTGTAGTTTTATGCAAAAACGATCTGATTG
GATAATTTCTGACTGATTTTGTCTGGATACTCGGAATCCTTGCAGATTTT
GGAAGAAATTAGCCTTGTGAGCAAAAAAGCTGACTCGTACTGCTCAAGAT
GATCATAGTCAAAAATCTCAAGGTccttgaaaattttctaaataggaAAT
TAAgatctaaagaaaatttttactgACTGGCTACTCTCACCAGGTAAGCT
TTCACACCTCAAAAGTCTGTTCTTCCGCAGAAAATTGTGAGATTTGTTAT
TGACACTTGGTAACTTTGACATATCAATCAATTGCGCACTACTTCCTCTT
ATATCGTTTATTAGCAATCATCGATTCTGACCTTGTATTACTCCCAGGTT
TAAAGAAGGGTTGCtaaattagatgagggatgccaatattagaccaactt
actgtAATTTGAATCAGCAAGGTTCAAAATTACCAATTTAATCAGTagta
aaaatcttcatcttttttaatttttcatgtttttaaaaatctttttcctc
CTTCTACAAATTATCTGGTGTATTTTTGCCACaacaaacatcaatttgac
aTTTATGAGAGGTTTATGAGTTTTTTTCTCAGCATTTGGCAAAAAGTTAC
TTGCTGTAAGCAACTGTTTCAAAGGCCATTCTAATGAAATCTTATTTTGG
TTTGAATAGAACTTTGGCCCAatcaaagcaaaacaaaaaaattgtcaatc
tcactaaaacaaaatattgcAGTTATTGAATTTCCCTATATAAAAATCCT
GATCACGCAATCATAGgagattttagaccaatgaaatcTCTTCTTTTCCA
TGGATTAAAGTTATGTCACGAGGGAAATGGCGATTAGAAAGAGTAAAAAC
CAGTCAAATTTTTAGATTATCCTCTCacaccatggaggtataaagatttt
gtttaggttgagtgtatttttcttttccttttagATATTGTGGTATCCAT
GATCCAGCATCTGTTGTATTTGACAACACAGACAAAAAATGGTTTTGCAA
TGGTAGAGGAAATACATCTGGAAGGTAATTAGTCTTAACAAGCTAAGAGG
TACTATTATTATCATGTTCACCTGTTACCAGCTTCTCTTTTTCATTAGTT
TACAAAGTGGGTAACAGTGCCAAATATTCAAAAGCTTTTGGGTTCAAAAT
TTGTGTGTCATTttgtttgtgatttttttctgcTGACCGATTTGGGGCAC
TGACCATTCaacattttgatgttttaaaactcatatttttcttgctttag
CCACATCATCAATCATTTGGTGAGAACCAAACACAAAGAAGTTTCTTTAC
ACAAGGATGGACCACTTGGTGAAACCCAATTAGAGTGTTACAACTGTGGT
TGCAGAAATGTGTTCTTGCTTGGGTTTATTCCAGCTAAAGCTGACTCGGT
TGTTGTGCTGCTCTGTAGGTAAGTGGAGGCTTCACATGTTTATATCAAAT
TATCTAGAAGATTTCTTACTTCATTTAGCATTTTGTACAAATACAAATTA
CACTTAGGGGTTATTTTGAACTAATCAAAATCTCTTATAATTCAGGCAAC
CTTGTGCCCAACAAAGTAATAAGCAAGATACCAACTGGGATCAAAGTCAA
TGGCAACCATTGATTAATGATAGATGTTTTCTCTCTTGGTTGGTGAAAGT
TCCATCAGAGCAAGAGCAATTGAGAGCCCGTCAAATTTCTGCTGTGCAAA
TCAACAAGCTTGAAGAATTGTGGAAGGTAATAGTGTGTTATCGTGTGCTG
TCTTCTGTAATGTTTATTTTAGGCTCACTGCATATATAGTTAGTAAATTA
TGAAAATCATGGAACCCTTGGGCTTAAACTGTTGATAAAATTTGAACCTC
caatgtttgaaaaatgtttaacTTTCACTTACAAAACCAGGCAAAATATG
CATAAGCTTATTTCGccacatcaaaataaaaaagctttaagtccattttt
ttgaaaattgagttatgaccatacagatgctttacaccccattatcaatt
ttttggctcaaatccAACAAAAACCAACCAAAAGTGGCCTATTTTTAAGC
TTTTAggaaaataagaattttacttttcactttattttcaggGCAAAAAA
GCCTGAAGTCCAGAGTGGAAATAATTTTGGACTAATGGCTTTTCTAACAT
atttcaaatgttaaaagtcgattttctcaaaacaacaaaaatggacttaa
gagcttttttattttgatgcgacgatttGGAAAGAACTTTATGAGATGTA
TAATATTTATGTTTTCTCTCAGGAAAATCCAGAAGCTGTTCTTGAAGATT
TGGAGAAACCTGGTGTTGATGAAGAGCCCTCAACTGTGTTGTTAAGGTAT
GGAATGTATTGATAATCAAAACAACCATTAGTATGAAAAAGTCAAACAGA
AACCAGCTGTGTATGATCACAGCAACAAAGacaataaagaatttttttga
aaatttacaggaAAATAATGTCTGTctggccatttttcatgcccttttag
cgtcTGGTCATCAGAAGCTGCCCTcctgaaatcactaaaattttggtaaa
aacagcctttttagcNTCATGCCCTTTTAACGCCTGGTCATCGGAAGCTG
CCCTcctgaaatcactaaaattttggtaaaaacagcctttttagcagaaa
aacacaagaaaaagggGCCTTTTTGGCCATCAACAgacgctgccctgcct
ttctaaaatatggcctgtgATTTTGTTTAGATATGAAGATGCTTATCAAT
ACCAAAACATTTTTGGTCCTCTGGTCAATCATGAAGCTGAGTAtgacaaa
aaattgaaagaatcaCAAGTAAAAGAACAACCAATATTTGTTTATTTCAA
TTGTAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAGTccctatttaaaa
aaagtgattttCAATAGGCTTTTCTGCATCATTCATTGAAGtttcaagaa
tatgtgctaaTTTGCTCTGATTTGCTGggtaaaatccattttcaagGTTC
CAATA

Coding sequence (CDS) from alignment at sc0000136:237549..247103+

>TCONS_00012027 ID=TCONS_00012027|Name=TCONS_00012027|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at sc0000136:237549..247103+ (Clytia hemisphaerica)
ATGTCAACGGTCGAATCACAGAGTTATGGACCTGCTTCACAAACTTTGAC
CTTCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGATACCCAAGGAAGTG
AGTTCGAATTTAACGAGTTTACATTACCATCTCAAACTCAAACGCAATCC
CAAGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTGATTAATGGCTTTCC
TGAAAACTCCACAACCATTAGCTTGAGAAAGGGAGGTCAAGAACATGAGC
TCCTCATCAGGAAACATGATAATaaggagaaaaaagaagaacccaacaaa
gacaaagaagaagaaacTGCAACAAAAGCAATCACAAAAGGTGTTGagga
attgaattttgaagatGATGAAGAGGAGTCCTTTGCAGACAAAGAGCTTC
CTCCGCATGCTTGCAGATATTGTGGTATCCATGATCCAGCATCTGTTGTA
TTTGACAACACAGACAAAAAATGGTTTTGCAATGGTAGAGGAAATACATC
TGGAAGCCACATCATCAATCATTTGGTGAGAACCAAACACAAAGAAGTTT
CTTTACACAAGGATGGACCACTTGGTGAAACCCAATTAGAGTGTTACAAC
TGTGGTTGCAGAAATGTGTTCTTGCTTGGGTTTATTCCAGCTAAAGCTGA
CTCGGTTGTTGTGCTGCTCTGTAGGCAACCTTGTGCCCAACAAAGTAATA
AGCAAGATACCAACTGGGATCAAAGTCAATGGCAACCATTGATTAATGAT
AGATGTTTTCTCTCTTGGTTGGTGAAAGTTCCATCAGAGCAAGAGCAATT
GAGAGCCCGTCAAATTTCTGCTGTGCAAATCAACAAGCTTGAAGAATTGT
GGAAGGAAAATCCAGAAGCTGTTCTTGAAGATTTGGAGAAACCTGGTGTT
GATGAAGAGCCCTCAACTGTGTTGTTAAGATATGAAGATGCTTATCAATA
CCAAAACATTTTTGGTCCTCTGGTCAATCATGAAGCTGAGTAtgacaaaa
aattgaaagaatcaCAAGTAAAAGAACAACCAATATTTGTTTATTTCAAT
TGTAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAGTccctatttaaaaa
aagtgattttCAATAGATGTCAACGGTCGAATCACAGAGTTATGGACCTG
CTTCACAAACTTTGACCTTCCTCGAGACTGAAGAAGCCGACTTTGGTGCG
GATACCCAAGGAAGTGAGTTCGAATTTAACGAGTTTACATTACCATCTCA
AACTCAAACGCAATCCCAAGCTTCTCAGTTGGACCAAGCAAGCCAGCCCC
TGATTAATGGCTTTCCTGAAAACTCCACAACCATTAGCTTGAGAAAGGGA
GGTCAAGAACATGAGCTCCTCATCAGGAAACATGATAATaaggagaaaaa
agaagaacccaacaaagacaaagaagaagaaacTGCAACAAAAGCAATCA
CAAAAGGTGTTGaggaattgaattttgaagatGATGAAGAGGAGTCCTTT
GCAGACAAAGAGCTTCCTCCGCATGCTTGCAGATATTGTGGTATCCATGA
TCCAGCATCTGTTGTATTTGACAACACAGACAAAAAATGGTTTTGCAATG
GTAGAGGAAATACATCTGGAAGCCACATCATCAATCATTTGGTGAGAACC
AAACACAAAGAAGTTTCTTTACACAAGGATGGACCACTTGGTGAAACCCA
ATTAGAGTGTTACAACTGTGGTTGCAGAAATGTGTTCTTGCTTGGGTTTA
TTCCAGCTAAAGCTGACTCGGTTGTTGTGCTGCTCTGTAGGCAACCTTGT
GCCCAACAAAGTAATAAGCAAGATACCAACTGGGATCAAAGTCAATGGCA
ACCATTGATTAATGATAGATGTTTTCTCTCTTGGTTGGTGAAAGTTCCAT
CAGAGCAAGAGCAATTGAGAGCCCGTCAAATTTCTGCTGTGCAAATCAAC
AAGCTTGAAGAATTGTGGAAGGAAAATCCAGAAGCTGTTCTTGAAGATTT
GGAGAAACCTGGTGTTGATGAAGAGCCCTCAACTGTGTTGTTAAGATATG
AAGATGCTTATCAATACCAAAACATTTTTGGTCCTCTGGTCAATCATGAA
GCTGAGTAtgacaaaaaattgaaagaatcaCAAGTAAAAGAACAACCAAT
ATTTGTTTATTTCAATTGTAGCGATTTTGTTCCAAGTCCCTATTTTAAAA
AGTccctatttaaaaaaagtgattttCAATAGATGTCAACGGTCGAATCA
CAGAGTTATGGACCTGCTTCACAAACTTTGACCTTCCTCGAGACTGAAGA
AGCCGACTTTGGTGCGGATACCCAAGGAAGTGAGTTCGAATTTAACGAGT
TTACATTACCATCTCAAACTCAAACGCAATCCCAAGCTTCTCAGTTGGAC
CAAGCAAGCCAGCCCCTGATTAATGGCTTTCCTGAAAACTCCACAACCAT
TAGCTTGAGAAAGGGAGGTCAAGAACATGAGCTCCTCATCAGGAAACATG
ATAATaaggagaaaaaagaagaacccaacaaagacaaagaagaagaaacT
GCAACAAAAGCAATCACAAAAGGTGTTGaggaattgaattttgaagatGA
TGAAGAGGAGTCCTTTGCAGACAAAGAGCTTCCTCCGCATGCTTGCAGAT
ATTGTGGTATCCATGATCCAGCATCTGTTGTATTTGACAACACAGACAAA
AAATGGTTTTGCAATGGTAGAGGAAATACATCTGGAAGCCACATCATCAA
TCATTTGGTGAGAACCAAACACAAAGAAGTTTCTTTACACAAGGATGGAC
CACTTGGTGAAACCCAATTAGAGTGTTACAACTGTGGTTGCAGAAATGTG
TTCTTGCTTGGGTTTATTCCAGCTAAAGCTGACTCGGTTGTTGTGCTGCT
CTGTAGGCAACCTTGTGCCCAACAAAGTAATAAGCAAGATACCAACTGGG
ATCAAAGTCAATGGCAACCATTGATTAATGATAGATGTTTTCTCTCTTGG
TTGGTGAAAGTTCCATCAGAGCAAGAGCAATTGAGAGCCCGTCAAATTTC
TGCTGTGCAAATCAACAAGCTTGAAGAATTGTGGAAGGAAAATCCAGAAG
CTGTTCTTGAAGATTTGGAGAAACCTGGTGTTGATGAAGAGCCCTCAACT
GTGTTGTTAAGATATGAAGATGCTTATCAATACCAAAACATTTTTGGTCC
TCTGGTCAATCATGAAGCTGAGTAtgacaaaaaattgaaagaatcaCAAG
TAAAAGAACAACCAATATTTGTTTATTTCAATTGTAGCGATTTTGTTCCA
AGTCCCTATTTTAAAAAGTccctatttaaaaaaagtgattttCAATAGAT
GTCAACGGTCGAATCACAGAGTTATGGACCTGCTTCACAAACTTTGACCT
TCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGATACCCAAGGAAGTGAG
TTCGAATTTAACGAGTTTACATTACCATCTCAAACTCAAACGCAATCCCA
AGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTGATTAATGGCTTTCCTG
AAAACTCCACAACCATTAGCTTGAGAAAGGGAGGTCAAGAACATGAGCTC
CTCATCAGGAAACATGATAATaaggagaaaaaagaagaacccaacaaaga
caaagaagaagaaacTGCAACAAAAGCAATCACAAAAGGTGTTGaggaat
tgaattttgaagatGATGAAGAGGAGTCCTTTGCAGACAAAGAGCTTCCT
CCGCATGCTTGCAGATATTGTGGTATCCATGATCCAGCATCTGTTGTATT
TGACAACACAGACAAAAAATGGTTTTGCAATGGTAGAGGAAATACATCTG
GAAGCCACATCATCAATCATTTGGTGAGAACCAAACACAAAGAAGTTTCT
TTACACAAGGATGGACCACTTGGTGAAACCCAATTAGAGTGTTACAACTG
TGGTTGCAGAAATGTGTTCTTGCTTGGGTTTATTCCAGCTAAAGCTGACT
CGGTTGTTGTGCTGCTCTGTAGGCAACCTTGTGCCCAACAAAGTAATAAG
CAAGATACCAACTGGGATCAAAGTCAATGGCAACCATTGATTAATGATAG
ATGTTTTCTCTCTTGGTTGGTGAAAGTTCCATCAGAGCAAGAGCAATTGA
GAGCCCGTCAAATTTCTGCTGTGCAAATCAACAAGCTTGAAGAATTGTGG
AAGGAAAATCCAGAAGCTGTTCTTGAAGATTTGGAGAAACCTGGTGTTGA
TGAAGAGCCCTCAACTGTGTTGTTAAGATATGAAGATGCTTATCAATACC
AAAACATTTTTGGTCCTCTGGTCAATCATGAAGCTGAGTAtgacaaaaaa
ttgaaagaatcaCAAGTAAAAGAACAACCAATATTTGTTTATTTCAATTG
TAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAGTccctatttaaaaaaa
gtgattttCAATAGATGTCAACGGTCGAATCACAGAGTTATGGACCTGCT
TCACAAACTTTGACCTTCCTCGAGACTGAAGAAGCCGACTTTGGTGCGGA
TACCCAAGGAAGTGAGTTCGAATTTAACGAGTTTACATTACCATCTCAAA
CTCAAACGCAATCCCAAGCTTCTCAGTTGGACCAAGCAAGCCAGCCCCTG
ATTAATGGCTTTCCTGAAAACTCCACAACCATTAGCTTGAGAAAGGGAGG
TCAAGAACATGAGCTCCTCATCAGGAAACATGATAATaaggagaaaaaag
aagaacccaacaaagacaaagaagaagaaacTGCAACAAAAGCAATCACA
AAAGGTGTTGaggaattgaattttgaagatGATGAAGAGGAGTCCTTTGC
AGACAAAGAGCTTCCTCCGCATGCTTGCAGATATTGTGGTATCCATGATC
CAGCATCTGTTGTATTTGACAACACAGACAAAAAATGGTTTTGCAATGGT
AGAGGAAATACATCTGGAAGCCACATCATCAATCATTTGGTGAGAACCAA
ACACAAAGAAGTTTCTTTACACAAGGATGGACCACTTGGTGAAACCCAAT
TAGAGTGTTACAACTGTGGTTGCAGAAATGTGTTCTTGCTTGGGTTTATT
CCAGCTAAAGCTGACTCGGTTGTTGTGCTGCTCTGTAGGCAACCTTGTGC
CCAACAAAGTAATAAGCAAGATACCAACTGGGATCAAAGTCAATGGCAAC
CATTGATTAATGATAGATGTTTTCTCTCTTGGTTGGTGAAAGTTCCATCA
GAGCAAGAGCAATTGAGAGCCCGTCAAATTTCTGCTGTGCAAATCAACAA
GCTTGAAGAATTGTGGAAGGAAAATCCAGAAGCTGTTCTTGAAGATTTGG
AGAAACCTGGTGTTGATGAAGAGCCCTCAACTGTGTTGTTAAGATATGAA
GATGCTTATCAATACCAAAACATTTTTGGTCCTCTGGTCAATCATGAAGC
TGAGTAtgacaaaaaattgaaagaatcaCAAGTAAAAGAACAACCAATAT
TTGTTTATTTCAATTGTAGCGATTTTGTTCCAAGTCCCTATTTTAAAAAG
TccctatttaaaaaaagtgattttCAATAGATGTCAACGGTCGAATCACA
GAGTTATGGACCTGCTTCACAAACTTTGACCTTCCTCGAGACTGAAGAAG
CCGACTTTGGTGCGGATACCCAAGGAAGTGAGTTCGAATTTAACGAGTTT
ACATTACCATCTCAAACTCAAACGCAATCCCAAGCTTCTCAGTTGGACCA
AGCAAGCCAGCCCCTGATTAATGGCTTTCCTGAAAACTCCACAACCATTA
GCTTGAGAAAGGGAGGTCAAGAACATGAGCTCCTCATCAGGAAACATGAT
AATaaggagaaaaaagaagaacccaacaaagacaaagaagaagaaacTGC
AACAAAAGCAATCACAAAAGGTGTTGaggaattgaattttgaagatGATG
AAGAGGAGTCCTTTGCAGACAAAGAGCTTCCTCCGCATGCTTGCAGATAT
TGTGGTATCCATGATCCAGCATCTGTTGTATTTGACAACACAGACAAAAA
ATGGTTTTGCAATGGTAGAGGAAATACATCTGGAAGCCACATCATCAATC
ATTTGGTGAGAACCAAACACAAAGAAGTTTCTTTACACAAGGATGGACCA
CTTGGTGAAACCCAATTAGAGTGTTACAACTGTGGTTGCAGAAATGTGTT
CTTGCTTGGGTTTATTCCAGCTAAAGCTGACTCGGTTGTTGTGCTGCTCT
GTAGGCAACCTTGTGCCCAACAAAGTAATAAGCAAGATACCAACTGGGAT
CAAAGTCAATGGCAACCATTGATTAATGATAGATGTTTTCTCTCTTGGTT
GGTGAAAGTTCCATCAGAGCAAGAGCAATTGAGAGCCCGTCAAATTTCTG
CTGTGCAAATCAACAAGCTTGAAGAATTGTGGAAGGAAAATCCAGAAGCT
GTTCTTGAAGATTTGGAGAAACCTGGTGTTGATGAAGAGCCCTCAACTGT
GTTGTTAAGATATGAAGATGCTTATCAATACCAAAACATTTTTGGTCCTC
TGGTCAATCATGAAGCTGAGTAtgacaaaaaattgaaagaatcaCAAGTA
AAAGAACAACCAATATTTGTTTATTTCAATTGTAGCGATTTTGTTCCAAG
TCCCTATTTTAAAAAGTccctatttaaaaaaagtgattttCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006759XLOC_006759Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012027-proteinTCONS_00012027-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012027-exon-sc0000136-1491911889:237549..238312TCONS_00012027-exon-sc0000136-1491911889:237549..238312Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:237549..238312TCONS_00012027-exon-sc0000136-1510915933:237549..238312Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:237549..238312TCONS_00012027-exon-sc0000136-1575043694:237549..238312Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1491911889:245033..245122TCONS_00012027-exon-sc0000136-1491911889:245033..245122Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:245033..245122TCONS_00012027-exon-sc0000136-1510915933:245033..245122Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:245033..245122TCONS_00012027-exon-sc0000136-1575043694:245033..245122Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1491911889:245349..245516TCONS_00012027-exon-sc0000136-1491911889:245349..245516Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:245349..245516TCONS_00012027-exon-sc0000136-1510915933:245349..245516Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:245349..245516TCONS_00012027-exon-sc0000136-1575043694:245349..245516Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1491911889:245644..245824TCONS_00012027-exon-sc0000136-1491911889:245644..245824Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:245644..245824TCONS_00012027-exon-sc0000136-1510915933:245644..245824Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:245644..245824TCONS_00012027-exon-sc0000136-1575043694:245644..245824Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1491911889:246371..246444TCONS_00012027-exon-sc0000136-1491911889:246371..246444Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:246371..246444TCONS_00012027-exon-sc0000136-1510915933:246371..246444Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:246371..246444TCONS_00012027-exon-sc0000136-1575043694:246371..246444Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1491911889:246829..247103TCONS_00012027-exon-sc0000136-1491911889:246829..247103Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1510915933:246829..247103TCONS_00012027-exon-sc0000136-1510915933:246829..247103Clytia hemisphaericaexon
TCONS_00012027-exon-sc0000136-1575043694:246829..247103TCONS_00012027-exon-sc0000136-1575043694:246829..247103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:237549..247103 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.0777	34.7252	44.1777	45.2109	135.694	108.381	97.8473	104.799	106.229	122.676	205.76	166.188	280.278	346.757	179.659	217.109	107.444	158.645	187.333	189.242	163.949	162.579	89.8674	125.569	240.202	222.171	101.423	163.213	72.6857	92.457
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018999RNA-helicase_UPF1_UPF2-interct
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00012027 vs. Swiss-Prot (Human)
Match: RENT1 (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 2.513e-123
Identity = 180/216 (83.33%), Postives = 193/216 (89.35%), Query Frame = 1 
Query:  727 SFADKELPPHACRYCGIHDPASVVFDNTDKKWFCNGRGNTSGSHIINHLVRTKHKEVSLHKDGPLGETQLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDTNWDQSQWQPLINDRCFLSWLVKVPSEQEQLRARQISAVQINKLEELWKENPEAVLEDLEKPGVDEEPSTVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQVKE 1374
            ++  K+LP HAC YCGIHDPA VV+ NT KKWFCNGRGNTSGSHI+NHLVR K KEV+LHKDGPLGET LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCA QS+ +D NWD SQWQPLI DRCFLSWLVK+PSEQEQLRARQI+A QINKLEELWKENP A LEDLEKPGVDEEP  VLLRYEDAYQYQNIFGPLV  EA+YDKKLKESQ ++
Sbjct:  112 TYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQD 327
The following BLAST results are available for this feature:
BLAST of TCONS_00012027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RENT12.513e-12383.33Regulator of nonsense transcripts 1 OS=Homo sapien... [more]
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