XLOC_006765 (gene) - C. hemisphaerica

Overview
NameXLOC_006765
Unique NameXLOC_006765
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000136:448136..458511+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006765 ID=XLOC_006765|Name=XLOC_006765|organism=Clytia hemisphaerica|type=gene|length=10376bp|location=Sequence derived from alignment at sc0000136:448136..458511+ (Clytia hemisphaerica)
AGATTTCATTGACCACTTCGGCCTTCAAGATACTTTCAAAAGTTTACAAG
ACCAAGCAGACTGCATCAGAATCAAGAACTTCAAACATGAACCAAAAACC
AAAGAACCAAACTCCAACATCGAGGTTCTTAGTACACCGAGAGGGGCATC
GAATTCAAGAAAAACATCCCCGAGGAGTCCTACACCAAGTGCACCAAAGA
TGTCAAATCAAAATAGAACATTACCAGACAAACAAGCAACTGCAAATGAC
GAAGATTCGACTTTAGACAACACTGACTCCTCTCCTAGAAACAAATCTCC
AAACCCGTCATCAACGTATGTACCCTTGACACCAAGTAGAACCCTTCCTC
CAAGAACTCCTACCCCAAACAGGACATCGCCCCGTACCCCTGAAACTCCG
AGTGGTACAATATCTCCTAGAAGTCCAAGCCCAAACCCCTCTTTATCGCG
TGGAAAGCAAACACATGAAGACTTACCTCAAAGAAGCGCAACTCCAAATG
GAGCCTCACCTCGAGAAGACCATATTAAATCCAGCAAGAAAATGCCAGGA
AGTTCTTCACCGAATGGTGTTTCACCTCGAAATAAAGATATTGTCTCATC
AGGCAAGCCTCAGGTTAACGGTAATGATCGACCTGGTTTGAGTAGAGAGC
AATCTCTCTCAATCAATGAAACACGATCAAATGAACCGTCCCCAAGAAAG
GTAATTTATTCTTCTGAGTTGACCTCGATCATGGTCCTTTCTAACTTAAC
ATTCTTGGTTCTGAATTTCTTATACAAAATTGCGACAGGTTTGAAAATGT
ACATTACgaaggtatgaaaagaaaaatatcgaTTTATTTAGGTACATCGT
GAAACCAGTCATATTCTATCATTTAtttaacacgtttttttataagaata
ttccaaatttttgataccttcggatgttcttaatttttcgagtttcaggc
ctttaaaaatgttcttaacttacttgttcttaatattgtTGCCAACGATT
CCTCATgctcttgttcttataaagaaacgtcTACAGAAATTAACACATTC
TTAGGACCATTTGTTTTCACCGAGGAGTGACCGTTCAACCATCTCATCAT
CATCAACACAGAAGAAGAAACCAACGATACCGATCATTCAACAAAATGGT
GTCGAAATTCATGACAGCGACGACGACGGTGAATTCGACGACGTTGACGG
ATCATGTAGTCATTTGTGAGTTATGTATTCcactaggggctgagttaggt
ctcgtatgcacatcggcgtatcgtcattttttgatcatgaaagtatagtc
cttgaagagtcagaaaacgtgtgtggcgttatttggatcaggcacaaatt
tctgttctttttattctaaaattaaaaactaCCCGCCTTTTAAAGAGCCg
cccttttttgaaaagaaaagaggAGAGTGCCGGGGTACTTTTTTGTATAT
CCTCATTAGAGTAAAAGGTGTTCGGAATTTCCCTTAGAGGAAATGTTATT
TCTACCAAGGAACTTGTTTCTACGATACTTCGGAAATTCCACACTTTCGA
GTAAGgtttactttaatcgtagaaactTTAGCGAGACTAAATTTaccgtt
ttagcgagtttttcctatttttgctaaaataaaacacgccgaatcgacag
atcgctaaaatttatccgcgcgaaatttctggttacattgccttgataca
tttttatcaataggaagggtttcagtgcaaataaatgcttgaaaacgaat
tcagtcaataatgcagtattcgctaaaatttatccatgcgaaattttttg
agatcgtgattcgctaaaataaatccaaaaaaaatcaagattttcctgat
tcgctaatatacgctaaaattagtctcgctaaaatttctacgattaaagt
atatactgtattgttaactgaagtgacgagaaaacttgttcaagGAGACA
TTGGAGTTAAataggttcgagttaaagagactcttcTGTATCATACTTGT
ATTGTAAGGCGTGGTATGGGAAAGCATCTTGGTAAAACGTCTTAAGAGAA
CACGACCCTTTGTTTGAGAAAATCTTATACAAATGATGCTCTATCATTCG
ATAAGCTTTCacttttgataaaaatccattAGAGGACAATCTAAAAACCA
caaaatattcataaaatttaccattaccATACTTGCAAATATGATATAAT
TATAAAATTAATAGTTGATCTTTTCCAGCTTTATCCAGCCATCCATAGAC
TGGGTCAAACGTTCGATAGCATTAGAATTTGTGCTGAAACCAGCTCTTCT
TTCGGTCATGCATAACTCTCAAAATGGACTACCATTCCACCCTAATTTAC
TCTATAAAAAGGTAAGTGTTGAAAATTAACTTTACCAAGAAGAATTTGCC
TCACCTATTGTCGTGTGTAAATATGTccttattgcccccgcaggagcgta
gcgacgaggaggcactcatagtttcacgcatagatattggactggaatct
cgaaattttgttgcgtttgttttgtcgcccaagcatccccgtagatagtc
tcttccgtaaatgttcggttttttccgggacggtagtatacatattttca
tattcctattacgttatatgctattaccattactacatattacaatttta
gttttgatttagctttgaaaagctcaagcgagtgttataaatgcaaatca
taacagtgtatgatataacacgaattacaatattacttgtgcaaatcaaa
acaaacaaaatggcagactggttatgatgatNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNcaattctttttccggaatctttaaagaaatttgctcaagt
tttcaatatatttttgttcaaactctaatttatctttgtcttttatttta
ttaataactaccgtgagattgggtaacttgcatcagtggaggctaacatg
catagccctcaaatgaaagacctggctggtcattaaaatataacTACGTA
gatccgctcgcagctctactctataccatttttgttttggtttaactttg
tattttaatgaccatcaggtctttcatttgatgcaatgcatgttagcctc
cactgatgcaagttacccaatctcacggtacctttattgtttatagagct
tctcgagctttaaataccatcatatggtcgtaactcgagaaagtccttct
taacttagtaaaacaagataccggcaaagtacaaaaaagttgaatgtatg
catatgtaaatgttgtgaatgtcaatcaatgtaaacaaactttttctttt
ggtcttcaaaatagatttaccttaCTTGCACTacatgcgcacattcaact
ttttcatgcagttgtgatagcctaaataacttacgctccagtggtttggc
gaaatagctccaattctggctttccaagttaggatggaccttcccgaagg
catttaaacactggttagactaggtacacagacagtcatacagaaacacc
ataaagtgaaagtatatatcGCTATAAACTCAAAAAGTCTAGCTTCCtga
aggcacgtctcttcattgtctgcgctgcttggagaaaagattgcatcatg
aaaaagtactatgcacttgaaaaaaaatttaggcgcattaccttgttgat
ttattcaccactatatattttgcctacaatctaagatgtctgcggcatta
tcagaaaaggtctatttagtgaataataatcatgatatatattgttgtaa
gaaagaaactaaggagaaaaaaacaaacaggagatgtgaaaacctgtaag
ctaatgataccataatttttgaaatatattgttgagaagcttttccagct
tttccttagttttaatctttaaagcattaaaaagctttataagtgcatga
catgatctttatgtgggggcatttagtgaaagctatgactagtatgTTAC
ATTAAAGAAGATATTTTTGCGGGaaaaaaatttggcggatttggtcaaaa
aatcccgctaaatttaattttttccgtcatccaccaaaattaaattcccg
ccaaatttaagttgCTCTATTAATTCCCCTGAATGTGTGCCGCCAAAtta
attccctctgaaaaaaattcttccgccatccgccaaattaaattcccgcc
aaaatttcttccttttaatgTATGTTGACATTTGTGCTGATGTATGCCAT
TAAGGCGTATTAGATAGATGCTCTCTAGAAGATACCTCATTACGTTTTGA
CACGAGTATCAGAAAGATGTCTTAAATTTATTCTAATTCTAACACCTATA
GGGTTTTAGGTTTTTGATAGCAAGGCTCccctttttcctttttgtagAAT
CTAAAGGATTCTGCCTGAATAATGCATTGGGCTTCccccagaaaatgttc
gtacatggggtgtggaggatatattgtccgggggtagtgaacAATCTACA
AAGTTTGTCCCGGGTAAACTTGCTCAattttgggggtaattttgaatgtc
caggcgGGTCAATTGATGCTCGTTCAGGGGTTAGACctgttatttttttc
tggaagagaccattatattattttctggagatttgaaaaagaagatgatT
TGAAGTAAATTCAAATTCGGGATCGAAGTTTTTTGTTCAAGAGCCTGCTC
TCCAAATAACATAAAATAAATTCCTAAACATTCCGCGGtagtttatattt
tttcttctcgGTAATCAGGTGAAAGAGCTGTACCGTAACCATCACAAATC
TTTCGAGGTTTGGCGTAAAAGCGAGATGAATAACTTGATATTACCAAACG
ATGGAAAGGAAGAAACGCATTCGAAACTTTGGACCATCGATATCATATAT
TTTATGATCAGGTAAATTGTCTTCAGTTATGtggggaaagtagaaaatat
tcTATTCTTGTAAAGATAAATCCTATCTTTGCTAATTGAACATAATAGTC
ATTATCGGGGTTATTTATTTCTATTAGGCAATATCAGATATCTAATACGG
TCCTAATACTGTgatgaaagaaaattctttaaaaaacatCTCCCAATATC
TGGATCGATGCGTTAGTTTTATTTCACTGAGTTGTTTATACGCTTCATAT
GGCCATGGCCATTCACTAGGTAAATCATAGGACTATTGTCTCGCACAACG
ACTTTCTATAGCTAGCTCTCCATCCATACATATGCTTCGCATGATGGGAT
GCTTTCAAACGTATATGTTTTTAGATTCACATAAGAGATTACGACAATGA
agaataaatcttttttcttgcCACAGAACTGCAAATATCGTTACAGCACC
AGGTAATGGTTGGCAAAATCCCAAACCACCAGGAACTAATGAAGACGGAA
GAGGGTATTGGTGTTGGGAAGCAAGGTAGGATGTTGATATTTTGAAGGAT
TTATTTCCGCGCGTTAAGGAATTATGAACGTTGCGATGGGCCCATTTTTT
CGGCACGGAATTAATTTGtcgaaattttgttgaaatAAATCTGTTCGAAA
ACTCTCCAAAATTAAACCACTTTAAAGACATTATTTATGTAACTAAGTTA
CTACCATTTGCTGACAcagtatttttaaagaaaagaaagaacaactttTC
CCCCCTTGGGCGCGTTTTTTGCTCTAGCCGCAGGTGAGCATTAAAATGGG
TGTTGGGGGGGACGGCGTTAAGATTCCAAAAAAGTATTTCCCGATTCGGT
TTCTATCGGATGTTCGGGAGAGCGGGAAATCCGCTGAAGAAAACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGTT
TTTGATTACCATATTTTTAGTGTAAAAAGATAGCTGCAAGTGTAAATACT
GGTATTAATTTATCTCACTTGCTAGTTATCACTAAAAGAACACTAAAAGA
ACTGTGTTATATATCAGACAAGCACCCCAGAGGTTACATGCGAGCTCCTT
GTAACCTCTTGCTAAGCTTACTAATCCTACTAATCCAACTAATCCTACTA
ATCCTACTAAAGAAATTCAACGGTATCAACTTATCTAACTTGCACATCCT
GCAAAATCGATCATTCTTTGTGAGTCAGTTTCACAACGACCACACCGCTA
AAATCGTTTCCATCTTTTTGACAAGCATGCCTGCatataaagtttcaaaa
actgtTTTGGGTTCTTTTAATCAAGCCAACAGAGAGATGTTTGGTGAAAC
AGCCGGTACGCAATGTAGTGCTAACTGCCTCTACGCTATATTCTGGTCCA
ATGTTAGACGTGTTTCTATTTGGAAAACTACTGACCTAGACAGAATTTTA
ATTGAAGGAGACAAATTATACAAACAATTAAATACAAATAGTTATTTATC
GGTAGATGAAATGCCACATTTCATTGAATCAAATGGTATTGTCACTGagc
ttcattttttaaattctgaaaatggaCAAGCTAAATTGATCAATGACTAT
ATCCTCTGCTTCAAATTCCTCTGAGCATGGCTCCGAATCCAGACTTTGAC
GCATTGATGATCATTGAAGGTTTTACTATAGCAATTATGAGAAGGCCTCA
AGgatttttcctttttgattCGTATAGTCGTAATGAATTTGGACTACTTG
AACCACTTAATGGAAAGTCTTGTCTTATAAAGTTTGAAGAcatttttgaa
cttgaaaaatatattcaacatttttatttaGAGGAAAATAACAAagataa
tttatttttccttaTTCAATTCATCAAAGTAGGTGAACTAAAAGAAGATT
TTAAAAAAGGTTCTTCAGCGAAGTTATTCTGGCTTTGTAAAGAAAAGTGC
AATCAAGCGAAAAAATGATTCTGATAAtggaaatgttttaaaaaagcgTC
AAAAGACACGCCAGGAAAGCAATCATAAATTTTatgagaaaaacaaagaa
attctgAAAGAAAACCAAAATAATTATCGTGCATTAAAATAAAGCAAGCC
AAAAAGTCCGCCGCGTCCAAagcaatgaaaaaataaaagacagCAATAAA
ATCTACCGTAaccaaaacaaggaaaaaattaaaaaaagtaaaaaagcttA
CCGCACCCAGAATAGTGacaaaattaaagaaaacaaaaaagcctATCGTG
AACGAAACAAAGAAAAGCGAAAAGAAACAAATTCTCGACAGAAAGAGCGA
ATAGCAAAATTTAAAACTCTCGTAAATGAAGGTCCTTTTTATATGTGTGT
TTGTTGCAACCAATGTCTCTATCGACAAACTGTTGTCAAATATACACCTG
AAAACTACAATATGCCAGAAGAAAACTTTTGTTCTGAAGTAATTTCATTT
TATGGCCAATTGTATATTtgtaagacatgccataacaaACTTAAAAAAGA
CAACTTACCATGCCAGTCTGTCAAAAACAAGCTCGATATTTATGAATTAC
CAgctgaatttcatactcttcGCAGGCTTGAGAAAGTTTTAATTTCTCAa
agaattttattcaaaaaaattgctATCATGCCAAAAGGTCAGTTTCCTAA
GTTAAAAGGGTCCATTTGTAATGTACCCATCGACATAGAAGATATTGCAA
AAACTTTACCAAGAAGAACAAACGATAATGGCTTGGTCATTGTCAAATTA
AAAAGGAAACTAGAATATAAAGGACATGTCATTTTTGAACCTATTAGACC
TGATTTCATTCAAAGTGTGTTGATTTATTTGAAAGATATCAATCCTCTCT
ATCATGACATAGTGATCGATGTGAATAATATATCTGAGGACCGTATCATA
GATGCCAATTCCGAAAGTACAGGTTCTTGTGAAGGcagtgaaaatgatga
aattgacGATGACAAGGAAAGTGATAAACTCGATGGAACGCAAGACAATG
CTTCAAAATTAGAGGAACTTGAGACAACTGCAAACCCTCTTGATGCATAT
CGTTCTAGTGCGAATGAGACTACTCTTATGCCTCACACTCCCTCTGAAAC
AGACATAGATAATGAAATTCTAACATTAGCCCCTGGTCAAGGGAAAAAGC
CAATTTCCATTTTGAATGATGAGGATTGCGAAATGCTTGCTCACCCTCAT
TTATTTCCTAAAGGTAAATTTGGATACAAAGTTGAACGAGATGTTAAACT
TAGTCCCTCCAAGTATTTTAACCAGCGTCTTTTGAACTATACCCAAAAGT
TTGCTTCCGACCCAGACTATATTTTTTTTGCCAGTTTTGTGATTCAACAA
GTCTCTTTAACCAGTCAGATAAATGTTGCCATGAGAAAAGTTGCTGCTAA
TAATTTGAATGCTGGTATgttaagtcaaaatttcaaagaaactgTGAAAC
AATTTATCGCAAATGACAAAGCCTTTGCTTTTATGAGTACTGTCAAAGGA
ACTCCAGCCTATTGGAAGAAATTTCAGCAAGAAGTTTTAGCAATGGTCAA
ACAATTAGGACCACcaactttcttttttactttgagCTGCGCAGACCTAA
GATGGAATGAATTGATTTCTATTATTTACAAACTCAAGGGTCAAGATGTC
ACTGATGAATTCATTAAGAATCTTTCATATCATGAAAGATGTGATTTGTT
GAATAGCAATCCTGTACTTGTAGCAAGGCATTTTCAATATAGAGTTGAAg
tgttttttaaaacaatagtTTTGAACGGCCCACTTGGTAAAACAACTTTT
TACGCTATTCGTGTTGAATTTCAAGTGCGTGGCAGCCCTCACATCCATTC
TTTTCTTTGGATCTTAAATGCTCCTACATTAACTCAGGAAACTAAACATG
AATACATTGAATTTGTTGATAAAATAATCAAGGTTTATTTACCATCGCAG
CAAGAAGATCCTGAATTATTCAATTTAGTGAAAACCTATCAGTTACACCG
ACATTCAAAAACATGTCGCAAGTACAAAAATACACCTTGCAGATTtcatt
ttgggaaatttttttctgaaaaaacgaTAGTGTCAGAGCCCTTGCCACAA
GAGTTACCACATGAGCAAAAAGAATCCATATTGACACTAAGAAAAGAATT
ATTAGTCAAAGTAAAGACTTATATCAACGAGAACCTCAATCCAagtaaaa
gaaacttttttgNAATCCCCTTTTTGCATTCCATTTCCGACCTGTTTATT
TTATCTAATCCTTGCATCTTTCTCAGCTTACGGCtagagcttccagcgca
gctggtttattgattctgctttgtcagcacaGCGCCTCCTttcaatacat
gtttttttaaaagcattgcacttataagcatttCTAGGCTCAGGTATGGG
GAAAATTAAGTATATGCTAAGCATTACCTCGAGCCTATAAAGTATAAGCT
ACTTTGTAGTATGGATATAAGCAGTATTATAGTAGTATAGCAGTATATAA
gcagtattaagtattaggatataagcatccctcaagcatttttcagcctt
attaaactttcgacctaagcatctctgagcctgttttcggatttttatat
gcttgtaaaaaaacatctaatatcataaaatatatttcataagATATTTT
ATTCCCTTCCAGGAGGTTAAAGAACCACTTGCAACAGCAGGACGACGATC
TTGACAACAATTTGTATGAAATGGCTGAAATAGTAATGGGATTGGATTAT
TATGATGGGATGGAGTTGTTGGAACAACTGAGAAGTGAACACTCTTTGGA
TGACGTAATCAAGATGACATCAAATATGGaacgatgaaaaagaaaatgag
aacGCTAATTTGTAAATAATCACCAAATGAAAATGCAGGCATCTTTTTCC
TTAAACAAAAGTTTCTTCCATTCGTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012036TCONS_00012036Clytia hemisphaericatranscript
TCONS_00012037TCONS_00012037Clytia hemisphaericatranscript
TCONS_00012038TCONS_00012038Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012036-proteinTCONS_00012036-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:448136..458511 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.75	0.9	0.07	0.17	0.54	0.62	0.85	0.55	0.83	0.64	1.08	0.94	8.66	8.3	2.77	3.32	1.25	1.35	7.57	4.05	1.13	0.75	1.88	1.56	4.11	2.79	1.45	1.74	0.93	1.49