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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012037 ID=TCONS_00012037|Name=TCONS_00012037|organism=Clytia hemisphaerica|type=transcript|length=635bp
ATCCAGCCATCCATAGACTGGGTCAAACGTTCGATAGCATTAGAATTTGT
GCTGAAACCAGCTCTTCTTTCGGTCATGCATAACTCTCAAAATGGACTAC
CATTCCACCCTAATTTACTCTATAAAAAGGTGAAAGAGCTGTACCGTAAC
CATCACAAATCTTTCGAGGTTTGGCGTAAAAGCGAGATGAATAACTTGAT
ATTACCAAACGATGGAAAGGAAGAAACGCATTCGAAACTTTGGACCATCG
ATATCATATATTTTATGATCAGAACTGCAAATATCGTTACAGCACCAGGT
AATGGTTGGCAAAATCCCAAACCACCAGGAACTAATGAAGACGGAAGAGG
GTATTGGTGTTGGGAAGCAAGGAGGTTAAAGAACCACTTGCAACAGCAGG
ACGACGATCTTGACAACAATTTGTATGAAATGGCTGAAATAGTAATGGGA
TTGGATTATTATGATGGGATGGAGTTGTTGGAACAACTGAGAAGTGAACA
CTCTTTGGATGACGTAATCAAGATGACATCAAATATGGaacgatgaaaaa
gaaaatgagaacGCTAATTTGTAAATAATCACCAAATGAAAATGCAGGCA
TCTTTTTCCTTAAACAAAAGTTTCTTCCATTCGTC Run BLAST on NCBI transcript from alignment at sc0000136:450368..458511+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012037 ID=TCONS_00012037|Name=TCONS_00012037|organism=Clytia hemisphaerica|type=transcript|length=8144bp|location=Sequence derived from alignment at sc0000136:450368..458511+ (Clytia hemisphaerica)
ATCCAGCCATCCATAGACTGGGTCAAACGTTCGATAGCATTAGAATTTGT
GCTGAAACCAGCTCTTCTTTCGGTCATGCATAACTCTCAAAATGGACTAC
CATTCCACCCTAATTTACTCTATAAAAAGGTAAGTGTTGAAAATTAACTT
TACCAAGAAGAATTTGCCTCACCTATTGTCGTGTGTAAATATGTccttat
tgcccccgcaggagcgtagcgacgaggaggcactcatagtttcacgcata
gatattggactggaatctcgaaattttgttgcgtttgttttgtcgcccaa
gcatccccgtagatagtctcttccgtaaatgttcggttttttccgggacg
gtagtatacatattttcatattcctattacgttatatgctattaccatta
ctacatattacaattttagttttgatttagctttgaaaagctcaagcgag
tgttataaatgcaaatcataacagtgtatgatataacacgaattacaata
ttacttgtgcaaatcaaaacaaacaaaatggcagactggttatgatgatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNcaattctttttccggaatcttt
aaagaaatttgctcaagttttcaatatatttttgttcaaactctaattta
tctttgtcttttattttattaataactaccgtgagattgggtaacttgca
tcagtggaggctaacatgcatagccctcaaatgaaagacctggctggtca
ttaaaatataacTACGTAgatccgctcgcagctctactctataccatttt
tgttttggtttaactttgtattttaatgaccatcaggtctttcatttgat
gcaatgcatgttagcctccactgatgcaagttacccaatctcacggtacc
tttattgtttatagagcttctcgagctttaaataccatcatatggtcgta
actcgagaaagtccttcttaacttagtaaaacaagataccggcaaagtac
aaaaaagttgaatgtatgcatatgtaaatgttgtgaatgtcaatcaatgt
aaacaaactttttcttttggtcttcaaaatagatttaccttaCTTGCACT
acatgcgcacattcaactttttcatgcagttgtgatagcctaaataactt
acgctccagtggtttggcgaaatagctccaattctggctttccaagttag
gatggaccttcccgaaggcatttaaacactggttagactaggtacacaga
cagtcatacagaaacaccataaagtgaaagtatatatcGCTATAAACTCA
AAAAGTCTAGCTTCCtgaaggcacgtctcttcattgtctgcgctgcttgg
agaaaagattgcatcatgaaaaagtactatgcacttgaaaaaaaatttag
gcgcattaccttgttgatttattcaccactatatattttgcctacaatct
aagatgtctgcggcattatcagaaaaggtctatttagtgaataataatca
tgatatatattgttgtaagaaagaaactaaggagaaaaaaacaaacagga
gatgtgaaaacctgtaagctaatgataccataatttttgaaatatattgt
tgagaagcttttccagcttttccttagttttaatctttaaagcattaaaa
agctttataagtgcatgacatgatctttatgtgggggcatttagtgaaag
ctatgactagtatgTTACATTAAAGAAGATATTTTTGCGGGaaaaaaatt
tggcggatttggtcaaaaaatcccgctaaatttaattttttccgtcatcc
accaaaattaaattcccgccaaatttaagttgCTCTATTAATTCCCCTGA
ATGTGTGCCGCCAAAttaattccctctgaaaaaaattcttccgccatccg
ccaaattaaattcccgccaaaatttcttccttttaatgTATGTTGACATT
TGTGCTGATGTATGCCATTAAGGCGTATTAGATAGATGCTCTCTAGAAGA
TACCTCATTACGTTTTGACACGAGTATCAGAAAGATGTCTTAAATTTATT
CTAATTCTAACACCTATAGGGTTTTAGGTTTTTGATAGCAAGGCTCccct
ttttcctttttgtagAATCTAAAGGATTCTGCCTGAATAATGCATTGGGC
TTCccccagaaaatgttcgtacatggggtgtggaggatatattgtccggg
ggtagtgaacAATCTACAAAGTTTGTCCCGGGTAAACTTGCTCAattttg
ggggtaattttgaatgtccaggcgGGTCAATTGATGCTCGTTCAGGGGTT
AGACctgttatttttttctggaagagaccattatattattttctggagat
ttgaaaaagaagatgatTTGAAGTAAATTCAAATTCGGGATCGAAGTTTT
TTGTTCAAGAGCCTGCTCTCCAAATAACATAAAATAAATTCCTAAACATT
CCGCGGtagtttatattttttcttctcgGTAATCAGGTGAAAGAGCTGTA
CCGTAACCATCACAAATCTTTCGAGGTTTGGCGTAAAAGCGAGATGAATA
ACTTGATATTACCAAACGATGGAAAGGAAGAAACGCATTCGAAACTTTGG
ACCATCGATATCATATATTTTATGATCAGGTAAATTGTCTTCAGTTATGt
ggggaaagtagaaaatattcTATTCTTGTAAAGATAAATCCTATCTTTGC
TAATTGAACATAATAGTCATTATCGGGGTTATTTATTTCTATTAGGCAAT
ATCAGATATCTAATACGGTCCTAATACTGTgatgaaagaaaattctttaa
aaaacatCTCCCAATATCTGGATCGATGCGTTAGTTTTATTTCACTGAGT
TGTTTATACGCTTCATATGGCCATGGCCATTCACTAGGTAAATCATAGGA
CTATTGTCTCGCACAACGACTTTCTATAGCTAGCTCTCCATCCATACATA
TGCTTCGCATGATGGGATGCTTTCAAACGTATATGTTTTTAGATTCACAT
AAGAGATTACGACAATGAagaataaatcttttttcttgcCACAGAACTGC
AAATATCGTTACAGCACCAGGTAATGGTTGGCAAAATCCCAAACCACCAG
GAACTAATGAAGACGGAAGAGGGTATTGGTGTTGGGAAGCAAGGTAGGAT
GTTGATATTTTGAAGGATTTATTTCCGCGCGTTAAGGAATTATGAACGTT
GCGATGGGCCCATTTTTTCGGCACGGAATTAATTTGtcgaaattttgttg
aaatAAATCTGTTCGAAAACTCTCCAAAATTAAACCACTTTAAAGACATT
ATTTATGTAACTAAGTTACTACCATTTGCTGACAcagtatttttaaagaa
aagaaagaacaactttTCCCCCCTTGGGCGCGTTTTTTGCTCTAGCCGCA
GGTGAGCATTAAAATGGGTGTTGGGGGGGACGGCGTTAAGATTCCAAAAA
AGTATTTCCCGATTCGGTTTCTATCGGATGTTCGGGAGAGCGGGAAATCC
GCTGAAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCATTGTTTTTGATTACCATATTTTTAGTGTAAAAAGATA
GCTGCAAGTGTAAATACTGGTATTAATTTATCTCACTTGCTAGTTATCAC
TAAAAGAACACTAAAAGAACTGTGTTATATATCAGACAAGCACCCCAGAG
GTTACATGCGAGCTCCTTGTAACCTCTTGCTAAGCTTACTAATCCTACTA
ATCCAACTAATCCTACTAATCCTACTAAAGAAATTCAACGGTATCAACTT
ATCTAACTTGCACATCCTGCAAAATCGATCATTCTTTGTGAGTCAGTTTC
ACAACGACCACACCGCTAAAATCGTTTCCATCTTTTTGACAAGCATGCCT
GCatataaagtttcaaaaactgtTTTGGGTTCTTTTAATCAAGCCAACAG
AGAGATGTTTGGTGAAACAGCCGGTACGCAATGTAGTGCTAACTGCCTCT
ACGCTATATTCTGGTCCAATGTTAGACGTGTTTCTATTTGGAAAACTACT
GACCTAGACAGAATTTTAATTGAAGGAGACAAATTATACAAACAATTAAA
TACAAATAGTTATTTATCGGTAGATGAAATGCCACATTTCATTGAATCAA
ATGGTATTGTCACTGagcttcattttttaaattctgaaaatggaCAAGCT
AAATTGATCAATGACTATATCCTCTGCTTCAAATTCCTCTGAGCATGGCT
CCGAATCCAGACTTTGACGCATTGATGATCATTGAAGGTTTTACTATAGC
AATTATGAGAAGGCCTCAAGgatttttcctttttgattCGTATAGTCGTA
ATGAATTTGGACTACTTGAACCACTTAATGGAAAGTCTTGTCTTATAAAG
TTTGAAGAcatttttgaacttgaaaaatatattcaacatttttatttaGA
GGAAAATAACAAagataatttatttttccttaTTCAATTCATCAAAGTAG
GTGAACTAAAAGAAGATTTTAAAAAAGGTTCTTCAGCGAAGTTATTCTGG
CTTTGTAAAGAAAAGTGCAATCAAGCGAAAAAATGATTCTGATAAtggaa
atgttttaaaaaagcgTCAAAAGACACGCCAGGAAAGCAATCATAAATTT
TatgagaaaaacaaagaaattctgAAAGAAAACCAAAATAATTATCGTGC
ATTAAAATAAAGCAAGCCAAAAAGTCCGCCGCGTCCAAagcaatgaaaaa
ataaaagacagCAATAAAATCTACCGTAaccaaaacaaggaaaaaattaa
aaaaagtaaaaaagcttACCGCACCCAGAATAGTGacaaaattaaagaaa
acaaaaaagcctATCGTGAACGAAACAAAGAAAAGCGAAAAGAAACAAAT
TCTCGACAGAAAGAGCGAATAGCAAAATTTAAAACTCTCGTAAATGAAGG
TCCTTTTTATATGTGTGTTTGTTGCAACCAATGTCTCTATCGACAAACTG
TTGTCAAATATACACCTGAAAACTACAATATGCCAGAAGAAAACTTTTGT
TCTGAAGTAATTTCATTTTATGGCCAATTGTATATTtgtaagacatgcca
taacaaACTTAAAAAAGACAACTTACCATGCCAGTCTGTCAAAAACAAGC
TCGATATTTATGAATTACCAgctgaatttcatactcttcGCAGGCTTGAG
AAAGTTTTAATTTCTCAaagaattttattcaaaaaaattgctATCATGCC
AAAAGGTCAGTTTCCTAAGTTAAAAGGGTCCATTTGTAATGTACCCATCG
ACATAGAAGATATTGCAAAAACTTTACCAAGAAGAACAAACGATAATGGC
TTGGTCATTGTCAAATTAAAAAGGAAACTAGAATATAAAGGACATGTCAT
TTTTGAACCTATTAGACCTGATTTCATTCAAAGTGTGTTGATTTATTTGA
AAGATATCAATCCTCTCTATCATGACATAGTGATCGATGTGAATAATATA
TCTGAGGACCGTATCATAGATGCCAATTCCGAAAGTACAGGTTCTTGTGA
AGGcagtgaaaatgatgaaattgacGATGACAAGGAAAGTGATAAACTCG
ATGGAACGCAAGACAATGCTTCAAAATTAGAGGAACTTGAGACAACTGCA
AACCCTCTTGATGCATATCGTTCTAGTGCGAATGAGACTACTCTTATGCC
TCACACTCCCTCTGAAACAGACATAGATAATGAAATTCTAACATTAGCCC
CTGGTCAAGGGAAAAAGCCAATTTCCATTTTGAATGATGAGGATTGCGAA
ATGCTTGCTCACCCTCATTTATTTCCTAAAGGTAAATTTGGATACAAAGT
TGAACGAGATGTTAAACTTAGTCCCTCCAAGTATTTTAACCAGCGTCTTT
TGAACTATACCCAAAAGTTTGCTTCCGACCCAGACTATATTTTTTTTGCC
AGTTTTGTGATTCAACAAGTCTCTTTAACCAGTCAGATAAATGTTGCCAT
GAGAAAAGTTGCTGCTAATAATTTGAATGCTGGTATgttaagtcaaaatt
tcaaagaaactgTGAAACAATTTATCGCAAATGACAAAGCCTTTGCTTTT
ATGAGTACTGTCAAAGGAACTCCAGCCTATTGGAAGAAATTTCAGCAAGA
AGTTTTAGCAATGGTCAAACAATTAGGACCACcaactttcttttttactt
tgagCTGCGCAGACCTAAGATGGAATGAATTGATTTCTATTATTTACAAA
CTCAAGGGTCAAGATGTCACTGATGAATTCATTAAGAATCTTTCATATCA
TGAAAGATGTGATTTGTTGAATAGCAATCCTGTACTTGTAGCAAGGCATT
TTCAATATAGAGTTGAAgtgttttttaaaacaatagtTTTGAACGGCCCA
CTTGGTAAAACAACTTTTTACGCTATTCGTGTTGAATTTCAAGTGCGTGG
CAGCCCTCACATCCATTCTTTTCTTTGGATCTTAAATGCTCCTACATTAA
CTCAGGAAACTAAACATGAATACATTGAATTTGTTGATAAAATAATCAAG
GTTTATTTACCATCGCAGCAAGAAGATCCTGAATTATTCAATTTAGTGAA
AACCTATCAGTTACACCGACATTCAAAAACATGTCGCAAGTACAAAAATA
CACCTTGCAGATTtcattttgggaaatttttttctgaaaaaacgaTAGTG
TCAGAGCCCTTGCCACAAGAGTTACCACATGAGCAAAAAGAATCCATATT
GACACTAAGAAAAGAATTATTAGTCAAAGTAAAGACTTATATCAACGAGA
ACCTCAATCCAagtaaaagaaacttttttgNAATCCCCTTTTTGCATTCC
ATTTCCGACCTGTTTATTTTATCTAATCCTTGCATCTTTCTCAGCTTACG
GCtagagcttccagcgcagctggtttattgattctgctttgtcagcacaG
CGCCTCCTttcaatacatgtttttttaaaagcattgcacttataagcatt
tCTAGGCTCAGGTATGGGGAAAATTAAGTATATGCTAAGCATTACCTCGA
GCCTATAAAGTATAAGCTACTTTGTAGTATGGATATAAGCAGTATTATAG
TAGTATAGCAGTATATAAgcagtattaagtattaggatataagcatccct
caagcatttttcagccttattaaactttcgacctaagcatctctgagcct
gttttcggatttttatatgcttgtaaaaaaacatctaatatcataaaata
tatttcataagATATTTTATTCCCTTCCAGGAGGTTAAAGAACCACTTGC
AACAGCAGGACGACGATCTTGACAACAATTTGTATGAAATGGCTGAAATA
GTAATGGGATTGGATTATTATGATGGGATGGAGTTGTTGGAACAACTGAG
AAGTGAACACTCTTTGGATGACGTAATCAAGATGACATCAAATATGGaac
gatgaaaaagaaaatgagaacGCTAATTTGTAAATAATCACCAAATGAAA
ATGCAGGCATCTTTTTCCTTAAACAAAAGTTTCTTCCATTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012037-exon-sc0000136-1491911889:450368..450496 | TCONS_00012037-exon-sc0000136-1491911889:450368..450496 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1510915933:450368..450496 | TCONS_00012037-exon-sc0000136-1510915933:450368..450496 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1575043694:450368..450496 | TCONS_00012037-exon-sc0000136-1575043694:450368..450496 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1491911889:453054..453196 | TCONS_00012037-exon-sc0000136-1491911889:453054..453196 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1510915933:453054..453196 | TCONS_00012037-exon-sc0000136-1510915933:453054..453196 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1575043694:453054..453196 | TCONS_00012037-exon-sc0000136-1575043694:453054..453196 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1491911889:453612..453710 | TCONS_00012037-exon-sc0000136-1491911889:453612..453710 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1510915933:453612..453710 | TCONS_00012037-exon-sc0000136-1510915933:453612..453710 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1575043694:453612..453710 | TCONS_00012037-exon-sc0000136-1575043694:453612..453710 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1491911889:458248..458511 | TCONS_00012037-exon-sc0000136-1491911889:458248..458511 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1510915933:458248..458511 | TCONS_00012037-exon-sc0000136-1510915933:458248..458511 | Clytia hemisphaerica | exon |
| TCONS_00012037-exon-sc0000136-1575043694:458248..458511 | TCONS_00012037-exon-sc0000136-1575043694:458248..458511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:450368..458511 + |
Blast
The following BLAST results are available for this feature:
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