XLOC_007199 (gene) - C. hemisphaerica

Overview
NameXLOC_007199
Unique NameXLOC_007199
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000156:364960..369397-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007199 ID=XLOC_007199|Name=XLOC_007199|organism=Clytia hemisphaerica|type=gene|length=4438bp|location=Sequence derived from alignment at sc0000156:364960..369397- (Clytia hemisphaerica)
CCAACTGTTTTTAGCTTGCATATCTGGTAAGTACCTGTCCATTGATTATA
TATGATAAGAAAGACACTGCAACATCATTTAACTTTACTTTAACCATCTA
AATAGTTTAGGCAATTTAAAAGTACTAAATCAAAGGTATTAACTTTTAGG
CTGATCAGAATTTTTATAAATACCTTTAAAAGATATTCGTTTGTTGTTTC
TTAAAGTCGACTCTTTGTTTGTTCAATTTTAGTCCATTTGCAATTTGGTT
CTAAAAAGTTCCAAGGAAGTAATTTATCATATAGGTCAAAATTTATTTAA
CACGATCAAACAAAAAAATTCATTAAAGGGAATAGCGCTATACTTATAGT
AGGGGTCGGAGTTGCTGGTAGTTCCATGGTATACTTTGAAATACATGCTG
ATGTCAGCCCGAAAGCTGATTGGCTTAACCGACAGTTATACGTGGTTTGA
GAGTATAGCTAAAACTTTGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTTGGTTTTTGTTATGATCC
AGCACTCCTAAATACTCCTCCGTATGGGTGTTTGTGCCAATGCTAGATCA
GCATTTCATAAATATACCATGCGTCGTTCCCTTTAAGCAAATAAAAACCA
CTCTTTTATCTTTAATCTCCTGATGATGACATGATTGAATTTCTTATTTA
GAATACCTCCAACATATCATAACAATGGGTCAATCTCAATACAATCTATT
GTTAATGGAAATCAAAAGACATATCTGGGCAGTGTCATTTATTTAACTCA
TTTCTGGTCAGATTAGCAACTAGCTAGGAGGTACTCTGCAAACAGAAATC
AATCAGTTACACAGGTTAGCTATATTTTATTTTTGATACACCAACATCTG
TTTACTATTTCTGTTTACTGCTTTCTCATATATCTCTGAAAACTTGCTTA
TTCATTAAGATGTTGATTATGCTCAACTCCTGTGTTGTCTTCTCCTTGAT
CTTTTTAATAATTTTCTTTATTCTGATGCCACCTGTTTGTATTGCACAAA
TGTTTGTTTCTGGTACATCATGATTTTGAATTTAGTATTGGTGGTTTTAT
AATGAACTTGCATACATCTTTTCTGTGCCAGTTTTATTTTATTTTGAAAA
TTCAATCTCTTTCTAGAAAACATCTGTGCATTAGATCTTCTAAGTTTTTC
TGGTATTTGGTGCAAACACAACCCTGAGCTTTTCACTGATAGCTCCTTAA
ATTTCTCCTTGATTAAAAGTTTCGAAGAGTCTGAACTTCATATAGGAACT
AACCCTTTGTGAATTATCATAGCACAGGTGCCACCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGTACTAGGGTTGATGAATGAGGGGTATG
TGCAGACGGGACCTCCGAAAACTGACCCTTAGAGAGACTGATTTTTGCTG
AAAAAGTGACCCTTAGATAGACTTTTTGAATTTTTTTTTCGATTTTTTCG
AAAAAAGTCATACCCTTAGAGAGACAATATTACAATTTTTTCTCTGGAAA
TCAAAAAGTTTCCTAAAAATCCTGAATTTTCCGACCCTTAAAGAGAGTAA
TTTAAAACTTTCTGATTTTTCCGACCCTTAGAGAGACTTTGAAAGGTGAA
AAAACCGACCCTTACCCTTACACATACCCATCATCCATTTTTGTCTAAGT
GCCCCCCTTCCCCCCGGGTTTTACCCTCTTAGTACTTGCATGGGACTTTC
AAATCTTTGATAAAATGAGATTTTTTTTACATTTCTTAGATTTCTTCCCT
GACTTTCATGGAATAAAACTAGAGTTGTCTCTTTCTCTCTCTCTCTAATT
CGATCTTCATGGGACGGAAAGATTTCTTCGAATAAGAGAAACATTTGAAT
ATAGAGGGTGATTTAAAATGTTTTACTTCGAATTACAGAAAGATTCGAAT
GATAGAGGTTCGAATTAGAGAGAGTTGACTAGGCTGTATCACAAACTCCT
TATTCTCTTATCATAGCATTCATCACAATGGCAAAAATCAGTGAAGACGA
ACTCGACGACATTAAGGAGAGATACGAACTCTTCGATAAGAAAGGAGATG
GAAAAATCGATGCAGCACAAATTATTGATGTTCTTCGTGCTTGTGGACAA
AACCCACTCANGATCGATGCTGCACAAATTATTGATGTTCTTCGTGCTTG
TGGACAAAACCCACTCAAACCCGATGTCGATAAGGTATAATTTCTTCATT
TATCAAGTAGTATGCATTCATTGAGTATTATCCAATATATATTTCGTTTG
TCTATAACGTTCTATTCAAGTTTCTCAAATCCTCTGTTTTATGATTTACA
TTTTACTAGTTGTAGTTGTCTAATAAGGACATCTTGAGGTTATTTTCATG
TATACGTAAATGTTAATTTTTTCAATTTTTTATATTCCAGATCATCAAAG
AATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGTTTTCTGTGGTATT
TACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTTTTGAAGATATGGT
TGAAGCTTTCAAAACATACGACAAAGAATCAAACGGTTCTATTTCATCGG
CACAAATTCGTCAACTTCTGATCAACTTGGGAGATACGTTGACTGAACAA
GAAGCTGATATCATCCTAGCGCCACATGAAGATGACCAGAGCAATATCAG
TTATCAACAACTCATCAAATCTCTTGTTGGAGAAAAGAAATAAATAGATT
TTTCTCTTTAGATTTATCTCCGCCAATAATCGCCCACTCTCAGATATCTA
CGCCCACTTGATTCCCTTTATAATTTTTGTTCACAATATTGTATAAAATT
ATGACCTCTTTTGTACCATATTATTTATTTCAGAGTTTTTTGTTCTTTTA
TTTTTCACTTTTTTTAAAAATGGGAAAATATGACAATTGACTGACTTTAC
GACAATATAATGACGACTGTTTTTTAACAGCAGCTCTTTTCCCTTGAATG
GACCAACTTCAGCACCAGGACTCCCTTATCTACTTAATAATATTCTGCTC
GAAAAGGTCCTGGGTACTAAATTGGCTTAATGAAGGTTAAGAGCATACAT
GACTGTGGACTGGTTTTGATTTTTTTTGGTGCTGGATTTTTTGTTTGTTT
ATATTTTTAGTTAAGAAGCAAAAGATTCCCCATGAGTCTGTTTGAAGTTT
TTCTACTCTTTGTAATTGGTGGGAAATAACAACAAACTAAATGACTTTCT
GGGATCTGTTGTGAGAAGCTTTTGTACACGTTTTCGAATAACGTCAAAAG
CAAATTTTAGAACATTTTTTTGTTGATTATAGGAATTATTTTTCATTCCA
TTTTTATAATTCCTATAATTTTTTTTGCAAACTTTTCAGAAATTGTAAAT
TGTTAAATTCAAGTTTTACGGAAATAATTGATAATACAAATAAAAGGGAC
CAAATAAAAAAATTGAGAACTTTTTGCATACCATATTTATTTTCTAATTA
AGTTTGACTTAAGTCTAAGAAGTNTTAATGACGACTGTTTTTTAACAGCA
GCTCTTTTCCCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTATCTA
CTTAATAATATTCTGCTAGAAAAGGTCCTGGGTACTAAATTGGCTTATTG
AAGGTTAAGAGCATACATGACTGTGGACTGGTTTTGATTTTTTTTGGTGC
TGGATTTTTTGTTTGTTTATATTTTTAGTTAAGAAGCAAAAGATTCCCCA
TGAGTCTGTTTGAAGTTTTTCTACTCCTTGTAATTGGTGGGAAATAACAA
CAAACTAAATGACTTTCTGGGATCTGTTGTGAGAAGCTTTTGTACACGTT
TTCGAATAACGTCAAAAGCAAATTTTAGAACATTTTTTTGTTGATTATAG
GAATTATTTTTCATTCCATTTTTATAATTCCTATAATTTTTTTTGCAAAC
TTTTCAGAAATTGTAAATTGTTAAATTCAAGTTTTACGGAAATAATTGAT
AATACAAATAAAAGGGACCAAATAAAAAAATTGAGAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012846TCONS_00012846Clytia hemisphaericatranscript
TCONS_00012845TCONS_00012845Clytia hemisphaericatranscript
TCONS_00012844TCONS_00012844Clytia hemisphaericatranscript
TCONS_00012843TCONS_00012843Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012846-proteinTCONS_00012846-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:364960..369397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.9	1.13	0.76	0.78	1.56	1.23	0.75	0.97	1.97	0.84	1.48	2.84	1381.63	1586.56	0.51	1.32	379.96	633.74	1257.9	1148.33	867.26	847.68	377.04	600.26	654.99	716.21	123.65	94.02	1.78	2.61