|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012843 ID=TCONS_00012843|Name=TCONS_00012843|organism=Clytia hemisphaerica|type=transcript|length=915bp
TCTTATTTAGAATACCTCCAACATATCATAACAATGGGTCAATCTCAATA
CAATCTATTGTTAATGGAAATCAAAAGACATATCTGGGCAGTGTCATTTA
TTTAACTCATTTCTGGTCAGATTAGCAACTAGCTAGGAGGTACTCTGCAA
ACAGAAATCAATCAGTTACACAGCATTCATCACAAtggcaaaaatcagtg
aagacGAACTCGACGACATTAAGGAGAGATACGAACTCTTCGATAAGAAA
GGAGATGGAAAAATCGATGCAGCACAAATTATTGATGTTCTTCGTGCTTG
TGGACAAAACCCACTCANGATCGATGCTGCACAAATTATTGATGTTCTTC
GTGCTTGTGGACAAAACCCACTCAAACCCGATGTCGATAAGATCATCAAA
GAATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGTTTTCTGTGGTAT
TTACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTTTTGAAGATATGG
TTGAAGCTTTCAAAACATACGACAAAGAATCAAACGGTTCTATTTCATCG
GCACAAATTCGTCAACTTCTGATCAACTTGGGAGATACGTTGACTGAACA
AGAAGCTGATATCATCCTAGCGCCACATGAAGATGACCAGAGCAATATCA
GTTATCAACAACTCATCAAATCTCTTGTTggagaaaagaaataaatagaT
TTTTCTCTTTAGATTTATCTCCGCCAATAATCGCCCACTCTCAGATATCT
ACGCCCACTTGATTCCCTTTATAATTTTTGTTCACAATATTGTATAAAAT
TATGACCTCTTTTGTACCATATTATTTttttcagaaattgtaaattgtta
aattcaagttttacggaaataattgataatacaaataaaagggaccaaat
aaaaaaattgagaac Run BLAST on NCBI transcript from alignment at sc0000156:364960..368406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012843 ID=TCONS_00012843|Name=TCONS_00012843|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at sc0000156:364960..368406- (Clytia hemisphaerica)
TCTTATTTAGAATACCTCCAACATATCATAACAATGGGTCAATCTCAATA
CAATCTATTGTTAATGGAAATCAAAAGACATATCTGGGCAGTGTCATTTA
TTTAACTCATTTCTGGTCAGATTAGCAACTAGCTAGGAGGTACTCTGCAA
ACAGAAATCAATCAGTTACACAGGTTAGCTATATTTTATTTTTGATACAC
CAACATCTGTTTACTATTTCTGTTTACTGCTTTCTCATATATCTCTGAAA
ACTTGCTTATTCATTAAGATGTTGATTATGCTCAACTCCTGTGTTGTCTT
CTCCTTGATCTTTTTAATAATTTTCTTTATTCTGATGCCACCTGTTTGTA
TTGCACAAATGTTTGTTTCTGGTACATCATGATTTTGAATTTAGTATTGG
TGGTTTTATAATGAACTTGCATACATCTTTTCTGTGCCAGTTTTATTTTA
TTTTGAAAATTCAATCTCTTTCTAGAAAACATCTGTGCATTAGATCTTCT
AAGTTTTTCTGGTATTTGGTGCAAACACAACCCTGAGCTTTTCACTGATA
GCTCCTTAAATTTCTCCTTGATTAAAAGTTTCGAAGAGTCTGAACTTCAT
ATAGGAACTAACCCTTTGTGAATTATCATAGCACAGGTGCCACCCCCCCC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTACTAGGGTTGATGAATG
AGGGGTATGTGCAGACGGGACCTCCGAAAACTGACCCTTAGAGAGACTGA
TTTTTGCTGAAAAAGTGACCCTTAGATAGACTTTTTGAATTTTTTTTTCG
ATTTTTTCGAAAAAAGTCATACCCTTAGAGAGACAATATTACAATTTTTT
CTCTGGAAATCAAAAAGTTTCCTAAAAATCCTGAATTTTCCGACCCTTAA
AGAGAGTAATTTAAAACTTTCTGATTTTTCCGACCCTTAGAGAGACTTTG
AAAGGTGAAAAAACCGACCCTTACCCTTACACATACCCATCATCCATTTT
TGTCTAAGTGCCCCCCTTCCCCCCGGGTTTTACCCTCTTAGTACTTGCAT
GGGACTTTCAAATCTTTGATAAAATGAGATTTTTTTTACATTTCTTAGAT
TTCTTCCCTGACTTTCATGGAATAAAACTAGAGTTGTCTCTTTCTCTCTC
TCTCTAATTCGATCTTCATGGGACGGAAAGATTTCTTCGAATAAGAGAAA
CATTTGAATATAGAGGGTGATTTAAAATGTTTTACTTCGAATTACAGAAA
GATTCGAATGATAGAGGTTCGAATTAGAGAGAGTTGACTAGGCTGTATCA
CAAACTCCTTATTCTCTTATCATAGCATTCATCACAATGGCAAAAATCAG
TGAAGACGAACTCGACGACATTAAGGAGAGATACGAACTCTTCGATAAGA
AAGGAGATGGAAAAATCGATGCAGCACAAATTATTGATGTTCTTCGTGCT
TGTGGACAAAACCCACTCANGATCGATGCTGCACAAATTATTGATGTTCT
TCGTGCTTGTGGACAAAACCCACTCAAACCCGATGTCGATAAGGTATAAT
TTCTTCATTTATCAAGTAGTATGCATTCATTGAGTATTATCCAATATATA
TTTCGTTTGTCTATAACGTTCTATTCAAGTTTCTCAAATCCTCTGTTTTA
TGATTTACATTTTACTAGTTGTAGTTGTCTAATAAGGACATCTTGAGGTT
ATTTTCATGTATACGTAAATGTTAATTTTTTCAATTTTTTATATTCCAGA
TCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGTTTTC
TGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTTTTGA
AGATATGGTTGAAGCTTTCAAAACATACGACAAAGAATCAAACGGTTCTA
TTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTGGGAGATACGTTG
ACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGAAGATGACCAGAG
CAATATCAGTTATCAACAACTCATCAAATCTCTTGTTGGAGAAAAGAAAT
AAATAGATTTTTCTCTTTAGATTTATCTCCGCCAATAATCGCCCACTCTC
AGATATCTACGCCCACTTGATTCCCTTTATAATTTTTGTTCACAATATTG
TATAAAATTATGACCTCTTTTGTACCATATTATTTATTTCAGAGTTTTTT
GTTCTTTTATTTTTCACTTTTTTTAAAAATGGGAAAATATGACAATTGAC
TGACTTTACGACAATATAATGACGACTGTTTTTTAACAGCAGCTCTTTTC
CCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTATCTACTTAATAAT
ATTCTGCTCGAAAAGGTCCTGGGTACTAAATTGGCTTAATGAAGGTTAAG
AGCATACATGACTGTGGACTGGTTTTGATTTTTTTTGGTGCTGGATTTTT
TGTTTGTTTATATTTTTAGTTAAGAAGCAAAAGATTCCCCATGAGTCTGT
TTGAAGTTTTTCTACTCTTTGTAATTGGTGGGAAATAACAACAAACTAAA
TGACTTTCTGGGATCTGTTGTGAGAAGCTTTTGTACACGTTTTCGAATAA
CGTCAAAAGCAAATTTTAGAACATTTTTTTGTTGATTATAGGAATTATTT
TTCATTCCATTTTTATAATTCCTATAATTTTTTTTGCAAACTTTTCAGAA
ATTGTAAATTGTTAAATTCAAGTTTTACGGAAATAATTGATAATACAAAT
AAAAGGGACCAAATAAAAAAATTGAGAACTTTTTGCATACCATATTTATT
TTCTAATTAAGTTTGACTTAAGTCTAAGAAGTNTTAATGACGACTGTTTT
TTAACAGCAGCTCTTTTCCCTTGAATGGACCAACTTCAGCACCAGGACTC
CCTTATCTACTTAATAATATTCTGCTAGAAAAGGTCCTGGGTACTAAATT
GGCTTATTGAAGGTTAAGAGCATACATGACTGTGGACTGGTTTTGATTTT
TTTTGGTGCTGGATTTTTTGTTTGTTTATATTTTTAGTTAAGAAGCAAAA
GATTCCCCATGAGTCTGTTTGAAGTTTTTCTACTCCTTGTAATTGGTGGG
AAATAACAACAAACTAAATGACTTTCTGGGATCTGTTGTGAGAAGCTTTT
GTACACGTTTTCGAATAACGTCAAAAGCAAATTTTAGAACATTTTTTTGT
TGATTATAGGAATTATTTTTCATTCCATTTTTATAATTCCTATAATTTTT
TTTGCAAACTTTTCAGAAATTGTAAATTGTTAAATTCAAGTTTTACGGAA
ATAATTGATAATACAAATAAAAGGGACCAAATAAAAAAATTGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012843-exon-sc0000156-1575043694:368234..368406 | TCONS_00012843-exon-sc0000156-1575043694:368234..368406 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1575043694:366764..366981 | TCONS_00012843-exon-sc0000156-1575043694:366764..366981 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1575043694:366122..366557 | TCONS_00012843-exon-sc0000156-1575043694:366122..366557 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1575043694:364960..365047 | TCONS_00012843-exon-sc0000156-1575043694:364960..365047 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1510915933:368234..368406 | TCONS_00012843-exon-sc0000156-1510915933:368234..368406 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1510915933:366764..366981 | TCONS_00012843-exon-sc0000156-1510915933:366764..366981 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1510915933:366122..366557 | TCONS_00012843-exon-sc0000156-1510915933:366122..366557 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1510915933:364960..365047 | TCONS_00012843-exon-sc0000156-1510915933:364960..365047 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1491911889:368234..368406 | TCONS_00012843-exon-sc0000156-1491911889:368234..368406 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1491911889:366764..366981 | TCONS_00012843-exon-sc0000156-1491911889:366764..366981 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1491911889:366122..366557 | TCONS_00012843-exon-sc0000156-1491911889:366122..366557 | Clytia hemisphaerica | exon |
| TCONS_00012843-exon-sc0000156-1491911889:364960..365047 | TCONS_00012843-exon-sc0000156-1491911889:364960..365047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:364960..368406 - |
Blast
BLAST of TCONS_00012843 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 4.380e-33 Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 2
Query: 194 ISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQIIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQACFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHEDDQSNISYQQLIKSLV 679
++D+L++ KE +ELFD+ GDGKI +Q DV+RA GQNP A+++ VL NP K EL +RV+ E F + + ++K GQ +ED +E F+ +DKE NG + A++R +L LG+ +TE+E + +LA HED I+Y+ +K ++
Sbjct: 61 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTN---AEVLKVL----GNP---------KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL 206
The following BLAST results are available for this feature:
|
