XLOC_007316 (gene) - C. hemisphaerica

Overview
NameXLOC_007316
Unique NameXLOC_007316
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000162:23629..33240+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007316 ID=XLOC_007316|Name=XLOC_007316|organism=Clytia hemisphaerica|type=gene|length=9612bp|location=Sequence derived from alignment at sc0000162:23629..33240+ (Clytia hemisphaerica)
CTTCGCGCTCGCTCAGCTAGAAAATCAAACGATCGACTTGAAGTCTCCCA AAAATCTGAAGGTGAAGACATCaacatttttggtcatttttgaagATTAA GTTGTGACAGGCATTGGATCCTAGATGTTGACTTAACTTATCTATGATGG ACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAACCAGAA AACAGGTCAACCATTGTGAAGGTNCATCTCCACAGTCTTGCTGAAAAACC AGAAAACAGGGCAACCATTGTGAAGGTTAGAGTgttgtttttttagattt cagAAATTTGCCTTTACTGCCACAATAATTAGTCAAGTTGctgatattta tttttttagtaaTTTGCCTCAACATCTTGGCCTAAGGTCAGAAAATTTGT AATGTCTTCCTCCTTtaccgggtgtctctgaaaaaacttccccctCCAGC CAGCCAGGCACATCcaggcaaatgaacggggtgagcatttgcatggggta ttcgtcacccagtgtaaatgagataggacgtctcaggctaaaagcatgaa aatgaatgaaaatgaacttcaaactgaaaatgggaaaaaaggaagaaaac tgggaactttatttttttgttaaaagtttcttcaatctttgaagaaaaaa ttgacccatggaaaaaaatttcatctatgcagttcttcaaaatgaagcaa aatatttcaaacccggttcaattgcgtggggtattcagcactattacatc acttttgttttcgatcccttgcatttgccaccaatcacaagtgaaaaata ccccgttcatttgcaaggatgtgcctgactgccctcctgtttgattcaaa attgcgaaaaagtgaaaaaatatattagcctgattttttcgaaatcgttt agaggagggtttaacttaaattttggtatatcaaactttaaaattgcttc attagaccaaaagttatgacaaaaaagagtaaaaaatcttttttcaaaaa gagcgaaaaaagacgaaaaacagggtatcaaattttttgttagaaaaaaa gacactcAAACTTTCTCTTCTCCACTCAAATAGACTCGCTAAGCTTTgga aacttttggaaaaattttgataaacctagacgatgtagcaaacatagtaa gtataagcacactgtgcttttaattggctgaaatttttttttgcgtcgga aaaactttttcaaactttcagcaatgattgaccaaattgttacaatgaaa attatccagcgcactttttatcttcttaccttgtTCCTTTTCAATGAGGC ACTCTAAGTTTACTGAAGGTCAGCACATAAGATAGTCTTATAATTAATTG AAACACGCTTCCTTGTGCGCTGCAGTGTAGTGCATGACATAACTCGTGCG GCAACTAACTccccttctgttggaagatcatattgggcgttttggcgtta ccacccttgAAGCAGCGGGCGCCTTTGTTTTTCctcaactctttccacca ttttagatggccttaacaatagatccaaaagagcgccataatcttggaag ataatttgttttggtctccggctttgggaatagcaatgtttttggttgtt ttcgatggaaaatgataagaaacttaagtttaaatataaaaaatataata aatataaaaactagatggTAAGGTTGATTATAAAAAAGAATAGTCGTTTC TTTAGACCATTACGTTACatataaaagaaaattgaaatggtttgtttttt tcttcattatatatttaagtttcCATTATTAAATGCTAATTTGtagacca tattagaaaatttttacatatttcgcaaaataaacacttacaaaaagatt acttactatttttacccCTGCTTTTTAAACAGCATCTTCTGTGGGCGTAA TATCAGGCAGAGACAAAACGCCCTCACCGTAAGATTCTTGGGTCGTCTTA TTGTTTGTTCCGTTTGTCAAGTCTGTTGGTCCTATTGTTTATGCTAAATC AGCAACTAGGAGGTTGGTCGACTAAATCAGCAACTAGgagattggtcgaa acatgagactgttgcatatctggtctgtattttcagttactgtaaaatcg aaagataaatcctgtattttttaatacgctgttcattaactcaaatcaaa tgactttgggggtttggtgaaatggtggccgaattgctgtcccatgtttt gtcagatagtcccaagttagagcagttggtgaatgacgtcaatgtttggc ggcataccaggaaaataaaaacaaaaagattattatttttgcatgaatta cgCTACCTTATATGTTAtcataaaattatacaaaacgaaaGCAAGTCTAG GCCGCCTGCCGCCTAGAGAGCGCAagccctaatattttttctcttatGGC CAtcaggggaaaacgaaagtgatcgatattcttcaaCAGAAGAACTTACC AAAAAAACACTAGACAAAAAGATGTCTTTCGAGGTGAGGAATGGAtcctg cgaagatgaaaaaattttgactaggcgtttttcgaggcaaaaatcagcaa aaagctggtgtttttgTAAATCTGAGAATCCTCTAAGATCCTCACTGGTT AGTAGGCCCACTTTGCctagtttatttttgttttcaacttgTTTCTGTCA GAATGCAGCAGACTAGCAAAATcaagtcatatgtaaacaaattacAACGG GGGTTCTGTTTTCTCCTTCTAGCTGTGTTTCAGCATTGATGCAAGATCTT TTTACATATCATTTCAAACTTTTGAGCAatgataaattgaaaaaatcact tttaaagatCCGAAAACCTTTCCCTGAatataattttacatttttcaaac aactctgacatctttgcccttatagCAAATTTCTGCTGACTCGACATttc atcattaaaaaaattgctgttttcagCAATAGTTgccaaaaataacaata attgccgttttatcttaaacacccaactgtcATGATGGGTCATTTCCAGA AAAGATCTTGTGCGTCCAAAGAAAGTATTCTACATTGTTTGTGGGTCCGA AAGAGATCTTGTTGGGTGGTCTTTTGTGGGTCAAGTAAAAATCCTGTTTG TGGTTTGTGGGCCTGCAAAAATCTTGTGCTTTTTTGTGGGAAAAGTGCTG AAAGAACTGAGTAGAAAATAGGTTACAAGCATCCCCTAATTTAGTCTTGT TGTTGGTCATAACAGTTTCTGAACAAAAGTTAAGATGCATGAACAGAATG ACATAGTATATCATATTAATCACCTGCGAAAAAAGAGTGAGACAAGTTTT ATGATGATAAAAAGGGCATAGAAATTGTCTATGCAGCAATTGACAGCTGC AGTTGAAAACTTACAAACAGTACAGAAATTGCAAGTTTTGAAAACAAGCG TTTTGTTTCACTGCTTTGAAACCTTTAATGCATGATATAAATAACACGAA CCTGAATTATTTATGATTATTGAATGATGATGGACAGACCATAATTATGT actcaaaaaaaacaaaaaaaacaatgttaTGGGCAAGCAACCCCCTTCAg ctagaaaatgaaaacttactAATCTTCAACATGATTTTTCATTTCCACAT GATAAGTTCAGCAAAAAAGGAAGTTAAAGTTGATAGATGACATAACAATA TTTCTTGTTTGTACGcctttttttcaattaataAATTTCAGAGAAAGTTT CTCTTGTATGCACAATGCTTACAACTAGCCAATAATGTGTAAAACCAAAA GAACaaacaaatttccaaaagaacAGTGTTTTGCTGCCAAACATTGACAC ATTAACACAAGGTCTAAAACAAGAATTTCTTNATGTTTGTacgctttttt ttcaattaagaAATTTCAGAGAAAGTTTGTCTTGTATGCACAAAGCTTAC AACTAGCCAATAATGTGTAAGACCAAAAGaacaaacaagttttgctgCCA AACATTAACACATTAACACTAGGCCTAAAAcaagaatttctttttggaca cagaggtcctttaaattaactgatgtctgttcgtccgtccgtccgtctgc tACCAGCTTTTTCGGggttggctcattagttttttctgattttttgtcag tgatgcaaaatggtgatttcCAAAAGGTGACTGAGCGCGATATTCGAAAA GAAGAATTTTGGGGCAAAAAGTGCCCAAAAATGGgttattttggactttg tgaaattgcttcattagattttttgcataaagatagagggcaaggttctc taaagaGTGGCTCAAGCagttttttccggaaaattcccttttgtcatttt cagggaaaaatgagcatttctcgcgattggcttggtattCTTTCTGACTT TTTAGTCTGCATATTTTTACGATTGTTGccatttttttattacattagcc ttcaggtaggtccattcagcatgtagcttgttattattattttttttttt aagaagaaaatgtcacggtggagggcgATGGTTTGACTTTTCTAGAGACT TATtaattaagctgtgcatttttctggtagtggattatttttataaaaga agtgtgtaaataaagaacttttcatttctttttccaAAGTCTTTTACAAT TAGTTTTGATTGTTTCTCCCTTTGTGCTTTCATTATAATTTCCAAATTAT CAGAAATGTTTAATTTcattatcaggtaggtccataaaagtatagcttgt tgtttgtttttttaaagttttcactTTCAAGGGCATGGTCATAAAACTTA GGTCACAATGTGATTAAAACTTTTAGACAGGCTGgaaaacatcaaaaatg gtttgattttgctgaaatttggcacacttgaaTCTAGAATCCTCTATTTT TTGGACCTATaaacatggaggtataaagaaaaacaggagtttaatttgtc ggtaattggtcgctaaagtcttttgatttcttttataaaatgtatcaaaa aaattctaagctcgcccgatgaaataagactctctagaactcaagtttgc tctgaacattctaactatcagtattgaagatatTCTTCTTGAAgatagcc ttctaatatacgagaattaaataaaacttagcCCCACAAAACAAGTTTTA TGTTCTATTTCGTTAtccgttaaattttgttttgaaaatatattttctta agAGCTAGAAAATGGAAagttatttataagcacatgcGATTTCAGAatca atttttagacaaaaagtcgctggagaattttggaggaaaatatCAAGCAA TTGATTCCACATTGAAGAAAACATTAATTGAAAAATCTTGTcgtttgatg aaggattgccaagttaacaggcctttttttagtcctaatattttcttaca ccgatgtcagaaacaatggatctcgtctcatctaatttcgaAAACTGAAa taagccaataagatttcaccaattGACAAAAGAGCttattaaaaatgcac gatacaTGAGATTACGAGCATGCAAacctcgtaacttttttaatcgtagg gtgAGCTTGGTTATAATGACATACTTCttctgtttctttatacctccata ctATAAATCAACCCTTGACCTTTCTtttgttcgtttgttcgttcgtctgt taccagcttttctcaggatttgcttcttttttttttttgaaattttgaac aaagACAGAGGGTactttttcccggaaaatttgtttttgggctgtaaaaa tcagattttcttatttgggtaaATTCCCTTAGTCATGTTTCATGCAATTG GCTCGGTTGgctctaattttttgcacaatgatgtaaaatggtgatgtttt aaaaaagattgatGGAGCgtgattttcgaaaaagttgaattCTTGGACTG TGTGTGAAACTGCTTAgttattttttcagatttttttgcataaataCAAG ATGAAAGGTTGTCTATAAAGTGGTTGAAACTGTTTtcccggaaaatattt tttgttttaaaatcagatttttgtatctggggaaattcccttttgtaatt tttagagaaaatgagcatttcccgCAACAGCTtgatattttttctgattt taaatTTGCATTTTCTTGTTgccattttttctaaattttcattgcattag ccttcaggtaggtccattcagcacgTAGCTTATTTTAATTAAACTTAGCC TATCAATTTTACAAATAGGCCTACGAATTATCAAAATAACACAGAAGTTT GAGCATGTTCGACAGTGATTCATTTGCGATGCGTTTAAGATTTGATCAGA GCATAATTTCTCGTAATTTATAGTAGTCAAATAGATGaataaattgatgt ttaaagAGATCAATTGAAACTTGCGTTGAAAGAAAATACCCTACCATTTA TGTGCAGCACCTCAAGTAAAAGTAGAAAcaacgtttttgcaaataatacT TCTCTCTTTCCATCCATTAGGATCAAGGATGTCTACCTGGTCTGGTTTTG TTTTTGGACAACAAAGAAAGCGATGTCGTtcttcttgttttgaaagtgag tcGGATAAAAATGTTTCCTTATGATTAAAATATCTCTCTCTGTCTCTCTT ACGAGTATTACGTTATTTTCTTGAAGTACATAGTCACACCTTTTGGAGAA TCAGGCCCATTGAATGCCTGGTTGAGTTCGATATTTCTAgaaaagttatt cttataaaaagagaaaTATGGTTTATACTTAAGATTCAAAAGACTTGCTT TGACAAGGCTTGTTCCTTGGACACTATCTTTCTTCTCATTATTCTTATAC ATTTGAATGGACCTACTGTCTGGATGTTTTTATCACTAACTAAATATTAA AGTAAGGGTTACGTTCTTACATTTTTTACAGACGTTACAATTATTGGCAG AGCATGCACCGAACCGAAAGATCATGCAGAATGAAGTTGGAATGCTTGAA TCACTAAAGAAAGTCAAAGAAGACGAAAGGTAACGAATATCTATCTTTCC TGATGGCGTTGACAAGTGattttttaatcttcttaatgatttttaatggt tttattCGTTTAAGCTGCAttcttttgaatatttatcACCTGGCTTAAGA TTTAAACGTAAATATCAAAACCAACTTCTCAAAATGATGTACTAGAGGAA AgtattttagttttaatttgAAAGAGTAGCGTGATGTGATCGTTTCTACT ATTGGACAGCCAATTATGtgtgaaattgtatgacttagtcaaatttttaa agCGTTATGTCTTCGCTTGAACCCAGGTTTCAAGGAGTTCCAGACATCAA GACGAGAGCCAACCGACTGGTCAACCTTTTAACGAAATCAACTCGACAAA CTGCTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTC TTCGTTGgaacacaaaacaaaaaagccAAATTGATTGTGCTTCAAATCAC TGGCCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTT CCGTATGTATCTAATCATCTGTACTATTGTTTATGTTGTGCCgtcataaa tattttttgaagacaacatattgtattttattttctaacgtTATctcatt tcactgaagattggtgCCTGTGCACCATGAAAttctgagtttgaaacaaa gatattgtctcaactctttattatatgTTGTGACATAATCGTTACCTGTG TAGCTTGGTCATTTAAAGTCAGGTTAACGATATTTAAATCGAGGTCTGAA TCGCTACTAAAAATATGAGCTTGCGAAAACATTGCAGTTGCTCAAAcgaa tcatcaaaacaaaatgtcGATCGATTGTTTTACTTGAATGTCTTCTTTCT AAAACTACATAATTCAGACCAtcaatttagaacgccatgacgTTGATAAT GTTGAATAAGTATTAAAACGAACGGTCTACTTTTTTGATGGTTCAAGTAA ATGATttgcattatttttgtaagATCAGTATTGACGTGCTTAAAATTATA GACATCTGACCTCAGTGAGTTAGTTGTAAatgtctttcattttcattttc aggtgaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAAGAAACGATGC ATGGTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGT CAACGAATCCAAAATATTGAACGCTGAACAAATCGCAAAAAATAAATCTG GCGAAGAGGTATGTAACAAAAGTGAATCTTTCTCAAGACTCAACGTTGAT TATAAGCCATCATGAACCGCAATCATTGAATCACTCCAGGAATATAGACA TCAGTTTCCCTTTAGCCTCCAACAAATGGTCTTTACCTTTAGTGAATAAA AGGGGTAGATTCTCTTAGCGTTGCTAAGAATCGACCTGACTTTATAGACT AGTTGGTACCATCTACATAAAAAAATGGACGAGTTTTTAGTCGGTTCTTC TTTCTTACAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTG AAGAGCGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAGAAGACCCT GTGGAAACCTCCAAAACTGTAAGCACACTACCATTCATTCATTTCCCATG AAAAGGccaaaaatagtgaaaattatTTAGAAGATCAGAACAATCGTTTA TCAATAAAATTGTTGTCCacttcattttttacaaaaacaacaTTAAAAGA TCCTCAAATTGAAGCTCGATATTGGCCAAAACTGAAGAACAATGCTGTTT TGTCTCTGgcaaaaattcattaaaaagtcTGTAAGTAAATTGAGGCGTCA AAATAGTTGCATAAAGGcagctcaaaattttctttccgttAGGCGTTCTT TAAGTTGAGTGACTTGTACCCTACTGCATGTCTCTCTGTGTTTCAGGCGC TGGCGAAAACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGATGGCTA AGCGGAGTTTCTAGTTTTATTAGTAACAGTTTATATTGGTAGAGTGGGGC CACCACATCATTTCGTAtttgaatataattattttcaaaaaagacaagCA CATCTTTACCGTTCTTCGAAAAAATGGTTATAAAACTGATACGCTATTCA TCACGCCACAGCACAAAAGGATTTCGAAATGCTGTGGAAatttaaaatgt gaaaatcgAAGTGACGTATTTATCACCAGGCTTATCTTTGAGAGTAGTAT ATTtagtaaaaaaattctttttatttttaaaaataaggaaGAGACAGTTA CTTTAAAATATATTAGTTTTTTATTCTGATATTATCCGCGCTAGTTTTTA TTTCCGTCGTGAAAAGAGGTGGCCTAAGAATGTTGAAACATTTCTTTCtg aattcgttttcttcttTTGGGAGAGCTGTGAAAACCAATTTTATAGGTTT CTTTGACTTTATGAttattctcaaaatttatttttggatGTGTAATTTAg acttttgatcaaattttaggTTGAGAGACTCCAACTGTATTGTACTGTAT TCAGTTGGATAAAAGCGAAGCAAACAGGTTTTGTTTGAGAccaattttat ttaaatattttcagttataatcatTGTAAGATATGAATGTATTATCGCGC ATAATTCTAgtagtttttaaaagaaaaccaaaaaattgATATTAATTTGT ACCGAAAATTAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013064TCONS_00013064Clytia hemisphaericatranscript
TCONS_00013065TCONS_00013065Clytia hemisphaericatranscript
TCONS_00013066TCONS_00013066Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013066-proteinTCONS_00013066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:23629..33240 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
ARMC1armadillo repeat-containing protein 1 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
108.52 108.62 73.5 78.89 77.64 59.58 87.51 94.38 106.21 98.3 100.66 90.82 82.64 82.97 91.18 101.33 132.44 135.49 75.39 94.15 156.8 160.32 117.2 121.82 149.89 133.67 117.08 102.34 107.27 99.74