TCONS_00013065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013065
Unique NameTCONS_00013065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013065 ID=TCONS_00013065|Name=TCONS_00013065|organism=Clytia hemisphaerica|type=transcript|length=1650bp
CTTCGCGCTCGCTCAGCTAGAAAATCAAACGATCGACTTGAAGTCTCCCA
AAAATCTGAAGGTGAAGACATCaacatttttggtcatttttgaagATTAA
GTTGTGACAGGCATTGGATCCTAGATGTTGACTTAACTTATCTATGATGG
ACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAACCAGAA
AACAGGGCAACCATTGTGAAGGATCAAGGATGTCTACCTGGTCTGGTTTT
GTTTTTGGACAACAAAGAAAGCGATGTCGTtcttcttgttttgaaaACGT
TACAATTATTGGCAGAGCATGCACCGAACCGAAAGATCATGCAGAATGAA
GTTGGAATGCTTGAATCACTAAAGAAAGTCAAAGAAGACGAAAGGTTTCA
AGGAGTTCCAGACATCAAGACGAGAGCCAACCGACTGGTCAACCTTTTAA
CGAAATCAACTCGACAAACTGCTTCGTCAGCCCGCGTTCACACGGTGGCG
CCCACATCTCAAAAGTTCTTCGTTGgaacacaaaacaaaaaagccAAATT
GATTGTGCTTCAAATCACTGGCCTTGGAGACGAAGAGAGCAAAAGGGTTT
GCGAAAAATGTCTTCTTTCCgtgaAAGGAGTGGTCAGTTTTACATTCAAC
ATGCCAAAGAAACGATGCATGGTTCGTGTGACCCAAGTTGTCAGTGCAGA
AATGCTGTGTAATGCTGTCAACGAATCCAAAATATTGAACGCTGAACAAA
TCGCAAAAAATAAATCTGGCGAAGAGGTTGTGATCTCGTTCGGAAAGAAT
CCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGTCGACTTTCCTGACTATCT
CCCTGAAGAAGACCCTGTGGAAACCTCCAAAACTGCGCTGGCGAAAACTG
GTGACAAAGACAAGAATGGTTCAGGCTCTGGATGGCTAAGCGGAGTTTCT
AGTTTTATTAGTAACAGTTTATATTGGTAGAGTGGGGCCACCACATCATT
TCGTAtttgaatataattattttcaaaaaagacaagCACATCTTTACCGT
TCTTCGAAAAAATGGTTATAAAACTGATACGCTATTCATCACGCCACAGC
ACAAAAGGATTTCGAAATGCTGTGGAAatttaaaatgtgaaaatcgAAGT
GACGTATTTATCACCAGGCTTATCTTTGAGAGTAGTATATTtagtaaaaa
aattctttttatttttaaaaataaggaaGAGACAGTTACTTTAAAATATA
TTAGTTTTTTATTCTGATATTATCCGCGCTAGTTTTTATTTCCGTCGTGA
AAAGAGGTGGCCTAAGAATGTTGAAACATTTCTTTCtgaattcgttttct
tcttTTGGGAGAGCTGTGAAAACCAATTTTATAGGTTTCTTTGACTTTAT
GAttattctcaaaatttatttttggatGTGTAATTTAgacttttgatcaa
attttaggTTGAGAGACTCCAACTGTATTGTACTGTATTCAGTTGGATAA
AAGCGAAGCAAACAGGTTTTGTTTGAGAccaattttatttaaatattttc
agttataatcatTGTAAGATATGAATGTATTATCGCGCATAATTCTAgta
gtttttaaaagaaaaccaaaaaattgATATTAATTTGTACCGAAAATTAC
Run BLAST on NCBI

transcript from alignment at sc0000162:23629..33240+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013065 ID=TCONS_00013065|Name=TCONS_00013065|organism=Clytia hemisphaerica|type=transcript|length=9612bp|location=Sequence derived from alignment at sc0000162:23629..33240+ (Clytia hemisphaerica)
CTTCGCGCTCGCTCAGCTAGAAAATCAAACGATCGACTTGAAGTCTCCCA
AAAATCTGAAGGTGAAGACATCaacatttttggtcatttttgaagATTAA
GTTGTGACAGGCATTGGATCCTAGATGTTGACTTAACTTATCTATGATGG
ACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAACCAGAA
AACAGGTCAACCATTGTGAAGGTNCATCTCCACAGTCTTGCTGAAAAACC
AGAAAACAGGGCAACCATTGTGAAGGTTAGAGTgttgtttttttagattt
cagAAATTTGCCTTTACTGCCACAATAATTAGTCAAGTTGctgatattta
tttttttagtaaTTTGCCTCAACATCTTGGCCTAAGGTCAGAAAATTTGT
AATGTCTTCCTCCTTtaccgggtgtctctgaaaaaacttccccctCCAGC
CAGCCAGGCACATCcaggcaaatgaacggggtgagcatttgcatggggta
ttcgtcacccagtgtaaatgagataggacgtctcaggctaaaagcatgaa
aatgaatgaaaatgaacttcaaactgaaaatgggaaaaaaggaagaaaac
tgggaactttatttttttgttaaaagtttcttcaatctttgaagaaaaaa
ttgacccatggaaaaaaatttcatctatgcagttcttcaaaatgaagcaa
aatatttcaaacccggttcaattgcgtggggtattcagcactattacatc
acttttgttttcgatcccttgcatttgccaccaatcacaagtgaaaaata
ccccgttcatttgcaaggatgtgcctgactgccctcctgtttgattcaaa
attgcgaaaaagtgaaaaaatatattagcctgattttttcgaaatcgttt
agaggagggtttaacttaaattttggtatatcaaactttaaaattgcttc
attagaccaaaagttatgacaaaaaagagtaaaaaatcttttttcaaaaa
gagcgaaaaaagacgaaaaacagggtatcaaattttttgttagaaaaaaa
gacactcAAACTTTCTCTTCTCCACTCAAATAGACTCGCTAAGCTTTgga
aacttttggaaaaattttgataaacctagacgatgtagcaaacatagtaa
gtataagcacactgtgcttttaattggctgaaatttttttttgcgtcgga
aaaactttttcaaactttcagcaatgattgaccaaattgttacaatgaaa
attatccagcgcactttttatcttcttaccttgtTCCTTTTCAATGAGGC
ACTCTAAGTTTACTGAAGGTCAGCACATAAGATAGTCTTATAATTAATTG
AAACACGCTTCCTTGTGCGCTGCAGTGTAGTGCATGACATAACTCGTGCG
GCAACTAACTccccttctgttggaagatcatattgggcgttttggcgtta
ccacccttgAAGCAGCGGGCGCCTTTGTTTTTCctcaactctttccacca
ttttagatggccttaacaatagatccaaaagagcgccataatcttggaag
ataatttgttttggtctccggctttgggaatagcaatgtttttggttgtt
ttcgatggaaaatgataagaaacttaagtttaaatataaaaaatataata
aatataaaaactagatggTAAGGTTGATTATAAAAAAGAATAGTCGTTTC
TTTAGACCATTACGTTACatataaaagaaaattgaaatggtttgtttttt
tcttcattatatatttaagtttcCATTATTAAATGCTAATTTGtagacca
tattagaaaatttttacatatttcgcaaaataaacacttacaaaaagatt
acttactatttttacccCTGCTTTTTAAACAGCATCTTCTGTGGGCGTAA
TATCAGGCAGAGACAAAACGCCCTCACCGTAAGATTCTTGGGTCGTCTTA
TTGTTTGTTCCGTTTGTCAAGTCTGTTGGTCCTATTGTTTATGCTAAATC
AGCAACTAGGAGGTTGGTCGACTAAATCAGCAACTAGgagattggtcgaa
acatgagactgttgcatatctggtctgtattttcagttactgtaaaatcg
aaagataaatcctgtattttttaatacgctgttcattaactcaaatcaaa
tgactttgggggtttggtgaaatggtggccgaattgctgtcccatgtttt
gtcagatagtcccaagttagagcagttggtgaatgacgtcaatgtttggc
ggcataccaggaaaataaaaacaaaaagattattatttttgcatgaatta
cgCTACCTTATATGTTAtcataaaattatacaaaacgaaaGCAAGTCTAG
GCCGCCTGCCGCCTAGAGAGCGCAagccctaatattttttctcttatGGC
CAtcaggggaaaacgaaagtgatcgatattcttcaaCAGAAGAACTTACC
AAAAAAACACTAGACAAAAAGATGTCTTTCGAGGTGAGGAATGGAtcctg
cgaagatgaaaaaattttgactaggcgtttttcgaggcaaaaatcagcaa
aaagctggtgtttttgTAAATCTGAGAATCCTCTAAGATCCTCACTGGTT
AGTAGGCCCACTTTGCctagtttatttttgttttcaacttgTTTCTGTCA
GAATGCAGCAGACTAGCAAAATcaagtcatatgtaaacaaattacAACGG
GGGTTCTGTTTTCTCCTTCTAGCTGTGTTTCAGCATTGATGCAAGATCTT
TTTACATATCATTTCAAACTTTTGAGCAatgataaattgaaaaaatcact
tttaaagatCCGAAAACCTTTCCCTGAatataattttacatttttcaaac
aactctgacatctttgcccttatagCAAATTTCTGCTGACTCGACATttc
atcattaaaaaaattgctgttttcagCAATAGTTgccaaaaataacaata
attgccgttttatcttaaacacccaactgtcATGATGGGTCATTTCCAGA
AAAGATCTTGTGCGTCCAAAGAAAGTATTCTACATTGTTTGTGGGTCCGA
AAGAGATCTTGTTGGGTGGTCTTTTGTGGGTCAAGTAAAAATCCTGTTTG
TGGTTTGTGGGCCTGCAAAAATCTTGTGCTTTTTTGTGGGAAAAGTGCTG
AAAGAACTGAGTAGAAAATAGGTTACAAGCATCCCCTAATTTAGTCTTGT
TGTTGGTCATAACAGTTTCTGAACAAAAGTTAAGATGCATGAACAGAATG
ACATAGTATATCATATTAATCACCTGCGAAAAAAGAGTGAGACAAGTTTT
ATGATGATAAAAAGGGCATAGAAATTGTCTATGCAGCAATTGACAGCTGC
AGTTGAAAACTTACAAACAGTACAGAAATTGCAAGTTTTGAAAACAAGCG
TTTTGTTTCACTGCTTTGAAACCTTTAATGCATGATATAAATAACACGAA
CCTGAATTATTTATGATTATTGAATGATGATGGACAGACCATAATTATGT
actcaaaaaaaacaaaaaaaacaatgttaTGGGCAAGCAACCCCCTTCAg
ctagaaaatgaaaacttactAATCTTCAACATGATTTTTCATTTCCACAT
GATAAGTTCAGCAAAAAAGGAAGTTAAAGTTGATAGATGACATAACAATA
TTTCTTGTTTGTACGcctttttttcaattaataAATTTCAGAGAAAGTTT
CTCTTGTATGCACAATGCTTACAACTAGCCAATAATGTGTAAAACCAAAA
GAACaaacaaatttccaaaagaacAGTGTTTTGCTGCCAAACATTGACAC
ATTAACACAAGGTCTAAAACAAGAATTTCTTNATGTTTGTacgctttttt
ttcaattaagaAATTTCAGAGAAAGTTTGTCTTGTATGCACAAAGCTTAC
AACTAGCCAATAATGTGTAAGACCAAAAGaacaaacaagttttgctgCCA
AACATTAACACATTAACACTAGGCCTAAAAcaagaatttctttttggaca
cagaggtcctttaaattaactgatgtctgttcgtccgtccgtccgtctgc
tACCAGCTTTTTCGGggttggctcattagttttttctgattttttgtcag
tgatgcaaaatggtgatttcCAAAAGGTGACTGAGCGCGATATTCGAAAA
GAAGAATTTTGGGGCAAAAAGTGCCCAAAAATGGgttattttggactttg
tgaaattgcttcattagattttttgcataaagatagagggcaaggttctc
taaagaGTGGCTCAAGCagttttttccggaaaattcccttttgtcatttt
cagggaaaaatgagcatttctcgcgattggcttggtattCTTTCTGACTT
TTTAGTCTGCATATTTTTACGATTGTTGccatttttttattacattagcc
ttcaggtaggtccattcagcatgtagcttgttattattattttttttttt
aagaagaaaatgtcacggtggagggcgATGGTTTGACTTTTCTAGAGACT
TATtaattaagctgtgcatttttctggtagtggattatttttataaaaga
agtgtgtaaataaagaacttttcatttctttttccaAAGTCTTTTACAAT
TAGTTTTGATTGTTTCTCCCTTTGTGCTTTCATTATAATTTCCAAATTAT
CAGAAATGTTTAATTTcattatcaggtaggtccataaaagtatagcttgt
tgtttgtttttttaaagttttcactTTCAAGGGCATGGTCATAAAACTTA
GGTCACAATGTGATTAAAACTTTTAGACAGGCTGgaaaacatcaaaaatg
gtttgattttgctgaaatttggcacacttgaaTCTAGAATCCTCTATTTT
TTGGACCTATaaacatggaggtataaagaaaaacaggagtttaatttgtc
ggtaattggtcgctaaagtcttttgatttcttttataaaatgtatcaaaa
aaattctaagctcgcccgatgaaataagactctctagaactcaagtttgc
tctgaacattctaactatcagtattgaagatatTCTTCTTGAAgatagcc
ttctaatatacgagaattaaataaaacttagcCCCACAAAACAAGTTTTA
TGTTCTATTTCGTTAtccgttaaattttgttttgaaaatatattttctta
agAGCTAGAAAATGGAAagttatttataagcacatgcGATTTCAGAatca
atttttagacaaaaagtcgctggagaattttggaggaaaatatCAAGCAA
TTGATTCCACATTGAAGAAAACATTAATTGAAAAATCTTGTcgtttgatg
aaggattgccaagttaacaggcctttttttagtcctaatattttcttaca
ccgatgtcagaaacaatggatctcgtctcatctaatttcgaAAACTGAAa
taagccaataagatttcaccaattGACAAAAGAGCttattaaaaatgcac
gatacaTGAGATTACGAGCATGCAAacctcgtaacttttttaatcgtagg
gtgAGCTTGGTTATAATGACATACTTCttctgtttctttatacctccata
ctATAAATCAACCCTTGACCTTTCTtttgttcgtttgttcgttcgtctgt
taccagcttttctcaggatttgcttcttttttttttttgaaattttgaac
aaagACAGAGGGTactttttcccggaaaatttgtttttgggctgtaaaaa
tcagattttcttatttgggtaaATTCCCTTAGTCATGTTTCATGCAATTG
GCTCGGTTGgctctaattttttgcacaatgatgtaaaatggtgatgtttt
aaaaaagattgatGGAGCgtgattttcgaaaaagttgaattCTTGGACTG
TGTGTGAAACTGCTTAgttattttttcagatttttttgcataaataCAAG
ATGAAAGGTTGTCTATAAAGTGGTTGAAACTGTTTtcccggaaaatattt
tttgttttaaaatcagatttttgtatctggggaaattcccttttgtaatt
tttagagaaaatgagcatttcccgCAACAGCTtgatattttttctgattt
taaatTTGCATTTTCTTGTTgccattttttctaaattttcattgcattag
ccttcaggtaggtccattcagcacgTAGCTTATTTTAATTAAACTTAGCC
TATCAATTTTACAAATAGGCCTACGAATTATCAAAATAACACAGAAGTTT
GAGCATGTTCGACAGTGATTCATTTGCGATGCGTTTAAGATTTGATCAGA
GCATAATTTCTCGTAATTTATAGTAGTCAAATAGATGaataaattgatgt
ttaaagAGATCAATTGAAACTTGCGTTGAAAGAAAATACCCTACCATTTA
TGTGCAGCACCTCAAGTAAAAGTAGAAAcaacgtttttgcaaataatacT
TCTCTCTTTCCATCCATTAGGATCAAGGATGTCTACCTGGTCTGGTTTTG
TTTTTGGACAACAAAGAAAGCGATGTCGTtcttcttgttttgaaagtgag
tcGGATAAAAATGTTTCCTTATGATTAAAATATCTCTCTCTGTCTCTCTT
ACGAGTATTACGTTATTTTCTTGAAGTACATAGTCACACCTTTTGGAGAA
TCAGGCCCATTGAATGCCTGGTTGAGTTCGATATTTCTAgaaaagttatt
cttataaaaagagaaaTATGGTTTATACTTAAGATTCAAAAGACTTGCTT
TGACAAGGCTTGTTCCTTGGACACTATCTTTCTTCTCATTATTCTTATAC
ATTTGAATGGACCTACTGTCTGGATGTTTTTATCACTAACTAAATATTAA
AGTAAGGGTTACGTTCTTACATTTTTTACAGACGTTACAATTATTGGCAG
AGCATGCACCGAACCGAAAGATCATGCAGAATGAAGTTGGAATGCTTGAA
TCACTAAAGAAAGTCAAAGAAGACGAAAGGTAACGAATATCTATCTTTCC
TGATGGCGTTGACAAGTGattttttaatcttcttaatgatttttaatggt
tttattCGTTTAAGCTGCAttcttttgaatatttatcACCTGGCTTAAGA
TTTAAACGTAAATATCAAAACCAACTTCTCAAAATGATGTACTAGAGGAA
AgtattttagttttaatttgAAAGAGTAGCGTGATGTGATCGTTTCTACT
ATTGGACAGCCAATTATGtgtgaaattgtatgacttagtcaaatttttaa
agCGTTATGTCTTCGCTTGAACCCAGGTTTCAAGGAGTTCCAGACATCAA
GACGAGAGCCAACCGACTGGTCAACCTTTTAACGAAATCAACTCGACAAA
CTGCTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTC
TTCGTTGgaacacaaaacaaaaaagccAAATTGATTGTGCTTCAAATCAC
TGGCCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTT
CCGTATGTATCTAATCATCTGTACTATTGTTTATGTTGTGCCgtcataaa
tattttttgaagacaacatattgtattttattttctaacgtTATctcatt
tcactgaagattggtgCCTGTGCACCATGAAAttctgagtttgaaacaaa
gatattgtctcaactctttattatatgTTGTGACATAATCGTTACCTGTG
TAGCTTGGTCATTTAAAGTCAGGTTAACGATATTTAAATCGAGGTCTGAA
TCGCTACTAAAAATATGAGCTTGCGAAAACATTGCAGTTGCTCAAAcgaa
tcatcaaaacaaaatgtcGATCGATTGTTTTACTTGAATGTCTTCTTTCT
AAAACTACATAATTCAGACCAtcaatttagaacgccatgacgTTGATAAT
GTTGAATAAGTATTAAAACGAACGGTCTACTTTTTTGATGGTTCAAGTAA
ATGATttgcattatttttgtaagATCAGTATTGACGTGCTTAAAATTATA
GACATCTGACCTCAGTGAGTTAGTTGTAAatgtctttcattttcattttc
aggtgaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAAGAAACGATGC
ATGGTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGT
CAACGAATCCAAAATATTGAACGCTGAACAAATCGCAAAAAATAAATCTG
GCGAAGAGGTATGTAACAAAAGTGAATCTTTCTCAAGACTCAACGTTGAT
TATAAGCCATCATGAACCGCAATCATTGAATCACTCCAGGAATATAGACA
TCAGTTTCCCTTTAGCCTCCAACAAATGGTCTTTACCTTTAGTGAATAAA
AGGGGTAGATTCTCTTAGCGTTGCTAAGAATCGACCTGACTTTATAGACT
AGTTGGTACCATCTACATAAAAAAATGGACGAGTTTTTAGTCGGTTCTTC
TTTCTTACAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTG
AAGAGCGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAGAAGACCCT
GTGGAAACCTCCAAAACTGTAAGCACACTACCATTCATTCATTTCCCATG
AAAAGGccaaaaatagtgaaaattatTTAGAAGATCAGAACAATCGTTTA
TCAATAAAATTGTTGTCCacttcattttttacaaaaacaacaTTAAAAGA
TCCTCAAATTGAAGCTCGATATTGGCCAAAACTGAAGAACAATGCTGTTT
TGTCTCTGgcaaaaattcattaaaaagtcTGTAAGTAAATTGAGGCGTCA
AAATAGTTGCATAAAGGcagctcaaaattttctttccgttAGGCGTTCTT
TAAGTTGAGTGACTTGTACCCTACTGCATGTCTCTCTGTGTTTCAGGCGC
TGGCGAAAACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGATGGCTA
AGCGGAGTTTCTAGTTTTATTAGTAACAGTTTATATTGGTAGAGTGGGGC
CACCACATCATTTCGTAtttgaatataattattttcaaaaaagacaagCA
CATCTTTACCGTTCTTCGAAAAAATGGTTATAAAACTGATACGCTATTCA
TCACGCCACAGCACAAAAGGATTTCGAAATGCTGTGGAAatttaaaatgt
gaaaatcgAAGTGACGTATTTATCACCAGGCTTATCTTTGAGAGTAGTAT
ATTtagtaaaaaaattctttttatttttaaaaataaggaaGAGACAGTTA
CTTTAAAATATATTAGTTTTTTATTCTGATATTATCCGCGCTAGTTTTTA
TTTCCGTCGTGAAAAGAGGTGGCCTAAGAATGTTGAAACATTTCTTTCtg
aattcgttttcttcttTTGGGAGAGCTGTGAAAACCAATTTTATAGGTTT
CTTTGACTTTATGAttattctcaaaatttatttttggatGTGTAATTTAg
acttttgatcaaattttaggTTGAGAGACTCCAACTGTATTGTACTGTAT
TCAGTTGGATAAAAGCGAAGCAAACAGGTTTTGTTTGAGAccaattttat
ttaaatattttcagttataatcatTGTAAGATATGAATGTATTATCGCGC
ATAATTCTAgtagtttttaaaagaaaaccaaaaaattgATATTAATTTGT
ACCGAAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007316XLOC_007316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013065-exon-sc0000162-1491911889:23629..23799TCONS_00013065-exon-sc0000162-1491911889:23629..23799Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:23629..23799TCONS_00013065-exon-sc0000162-1510915933:23629..23799Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:23629..23799TCONS_00013065-exon-sc0000162-1575043694:23629..23799Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:23854..23903TCONS_00013065-exon-sc0000162-1491911889:23854..23903Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:23854..23903TCONS_00013065-exon-sc0000162-1510915933:23854..23903Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:23854..23903TCONS_00013065-exon-sc0000162-1575043694:23854..23903Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:30049..30123TCONS_00013065-exon-sc0000162-1491911889:30049..30123Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:30049..30123TCONS_00013065-exon-sc0000162-1510915933:30049..30123Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:30049..30123TCONS_00013065-exon-sc0000162-1575043694:30049..30123Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:30460..30557TCONS_00013065-exon-sc0000162-1491911889:30460..30557Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:30460..30557TCONS_00013065-exon-sc0000162-1510915933:30460..30557Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:30460..30557TCONS_00013065-exon-sc0000162-1575043694:30460..30557Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:30855..31080TCONS_00013065-exon-sc0000162-1491911889:30855..31080Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:30855..31080TCONS_00013065-exon-sc0000162-1510915933:30855..31080Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:30855..31080TCONS_00013065-exon-sc0000162-1575043694:30855..31080Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:31631..31786TCONS_00013065-exon-sc0000162-1491911889:31631..31786Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:31631..31786TCONS_00013065-exon-sc0000162-1510915933:31631..31786Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:31631..31786TCONS_00013065-exon-sc0000162-1575043694:31631..31786Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:32039..32146TCONS_00013065-exon-sc0000162-1491911889:32039..32146Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:32039..32146TCONS_00013065-exon-sc0000162-1510915933:32039..32146Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:32039..32146TCONS_00013065-exon-sc0000162-1575043694:32039..32146Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1491911889:32475..33240TCONS_00013065-exon-sc0000162-1491911889:32475..33240Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1510915933:32475..33240TCONS_00013065-exon-sc0000162-1510915933:32475..33240Clytia hemisphaericaexon
TCONS_00013065-exon-sc0000162-1575043694:32475..33240TCONS_00013065-exon-sc0000162-1575043694:32475..33240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:23629..33240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.1792	57.9993	32.169	38.2467	19.1224	17.4252	10.381	26.5797	13.0619	14.9518	10.3921	15.2237	20.3018	5.74563	28.6536	38.1876	44.1597	43.5849	13.7149	24.261	32.745	47.9829	30.2409	52.2986	1.85642e-09	2.07238	60.152	43.034	38.5729	28.1102
Blast
[Close]
BLAST of TCONS_00013065 vs. Swiss-Prot (Human)
Match: ARMC1 (Armadillo repeat-containing protein 1 OS=Homo sapiens GN=ARMC1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.778e-52
Identity = 110/277 (39.71%), Postives = 163/277 (58.84%), Query Frame = 3 
Query:  150 DALAVVRHLHSLAEKPENRATIVKDQGCLPGLVLFLDNKESDXXXXXXXXXXXXAEHAPNRKIMQNEVGMLESLKKVKEDERFQGVPDIKTRANRLVNLLTKSTRQTASSARVHTVAPTSQKFFVGTQNKKAKLIVLQITGLGDEESKRVCEKCLLSVKGVVSFTFNMPKKRCMVRVTQVVSAEMLCNAVNESKILNAEQIAKNKSGEEVVISFGKNPSVPSEEREEVDFPDYLPE-EDPVETSKTALAKTGDKDKNXXXXXXXXXXXXFISNSLYW 977
            DAL+VV  L  LA  P NR  IV+DQGCLPGL+LF+D+    VV   L  L+ LAE   NR+ M+ E+GM+ SL+ V +     G  + K  A+ + ++L  S      S           +FF+GT NK+AK +VL I GL D   + +CE+ LL +KGV+SFTF M  +RC+VR+   + AE L +A+  +K++ A+Q+ K++SGEE+++ F      P E  +  + PDYLPE E P +    A+++ G   +   G+ WLS  ++F+S S YW
Sbjct:   13 DALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPG--ETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQ---DTPVEVEQNTELPDYLPEDESPTKEQDKAVSRVGSHPEG--GASWLSTAANFLSRSFYW 282
The following BLAST results are available for this feature:
BLAST of TCONS_00013065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARMC14.778e-5239.71Armadillo repeat-containing protein 1 OS=Homo sapi... [more]
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