XLOC_007577 (gene) - C. hemisphaerica

Overview
NameXLOC_007577
Unique NameXLOC_007577
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000170:188402..193588+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007577 ID=XLOC_007577|Name=XLOC_007577|organism=Clytia hemisphaerica|type=gene|length=5187bp|location=Sequence derived from alignment at sc0000170:188402..193588+ (Clytia hemisphaerica)
AACAAACTGCCAGTAAAAAATAGTAATATTATATGGTTACAAGAAAGCCA AATCAAAGGGTAGAACCATTTTTGCTTatgttttcctttgtttttatttc atagTAAATATAATAACAAAATACTTTTTGTAAAAAGAAACTCGAAATGT CTGGTTGTTTGGATAATGCAAATTGTCCTGAAATCAACTGTCCTGACCTC tcagaaaaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGGTAAG TATAtcatattttaaagaatttttaataaCAAATCATGAAATGCATTCAA AAAAATGTCCCCTCAATGGTCCTGGGAGGGACTAGCAATTTTACTACCTC AAGTGTATATATTTTCGTGAAGTACTAAATTTTCTGGTGTagttaatttc gcgaaatttagtactGTTTTGTtagtaaatttttcaagaacACAAAATTA AGAAAGGAAATTAAcacacaaattttttttaactaggtcgaaagtttttt tacactGTGTTGACTATTTAGTCACCATTTGAATACagttttgttactat ttttgcCCCTATTTACATcgtttttcaagcaaaatcagtctctttttttt tgaatcCTTTTCTTTTAATATATAATCATATAATTGTGAGTGAATCacaa aatttaatacacgccAAAAATTCCAGAAAGTAGCAATCGCAAAATTTTGT ACTCATGAAATTCATTTCTCGAAAGTACCCGCAAAAATATATAGAAGTCA ACCCAAAGACAATTTCATTTGACAGACTTTCGTACCCCACACACGTTTTT TTGGAATAAATTCTTAATATGTGCTTATGTCAGCTGAAGTGATTGATCTA TCTGAAAACAAAGCCATAAGTATTTTATAAGTGTGTATTACTTGCagaat ttcaatttgaaaaatgaatagCACGATCATCATCGCACAATCGCGATATG GGTATCTATACCTTTTCAAATAGATATCATTATTTGTTTGGTGAACAAAT CACACAAAAAGAAGTGCTCAATACAAAAGATAgaactttctttaaaatta tattgttctATGACATGGTGAATAGAACTTTACATTACTCAGGGTCATGT ACTCAACAATCATCAGATgtaaatgaaaatttataaaccttttcaaatag aataaaaattaattttaaacaaGCAAGTAAAAAAATGATATGGAAACCTT AAAAATCGTGATATAAagcaattttttttccttctagttttTTATTGGCT GGTGGTTTATTATTGATGCTGCAGCCAACACACCTCTTGATAAGAATGCT TATCACACATGCGGCGTCGTCTCTACTATAGCTCTCTTTATGTAAGTGAG AACACTCCATGCTCTTCTTATACCCCTTAAATATATTGGTAACCTCCTAA TTCTGAAACCCTTCTTTAGAGGTAAAAAAGATGAAGGAATCTAGCACTAA ACTAATTTTTTGTTCTTTGgctaataagaaaaataaataaattgctCAAC ATATCAATAATACAATTAAAAGAAACTCTGAGATTTGGAACACATCCAGC ATGTGAGATAACGACAAAgtgcaaaattgtttttttttgttaaaagctAT GTGATaatctgatttttctgaaaatttttgaacatcTCTTTTTTTTTAGG ATAAATGCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAGGAGG TTGTCTCGGACAAACAGgtactttttccttttttatgatCTCAATATGTT GACAAGCGTAGGTCAAGATCAGgtacttttaaatttttatgatCTTTGTA TTATTTTTGACAAGCGTAGGTCAGGATTACTTCATTCTTCCAATCAGGAA CTTCTGGAAAAGTGTGActgtttgtaaaaaatgtataaacaaaaatgttg aattcttgctcttttgatttttcttattGGAAATTCACGTAAAAAATGAT GCAAGCCGGGTCATCAAGACAttaattagagcttttttatCTTTGAGAGG TGACAAAGAAAATAATGTGATGTTTAGGCTATTGTGATATATAGTAAgta tttcatttgttttgaatttatcaATCAAGTGTTGGTTAGCTCGTTTTTCA CATTTTAGGAGCAAGGATATGGTTGCTTCTTGGCTTTCTTCTTGGTTTCG GTGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGATTATGTAACTAAA GGTGAGTCAAACTTTAGTACATTGTTTATAAGGACAACAAAAAAGTGTAA TTGGGTGGTAGGGATAGGTAAGAGAGGTGTCATATGTCCTAATTATGACC TTAAATTAGCTACAGAACGCGTAGGCcttattggcaatatttttttggTG CTGACTTTCTTGACTTTGATTtgagcaaaaatatttgaagGTTTTGCTAT TTGCTCATTACCACGAAAGAAATCTACATCACAAAGATCCCAAAttatct gattatcccttttatAAGTACTGCCTGGTTGGGCAATCTTTGAAACtatt gaaaaaattatgtttctagaaattatattcattaaaaatataatttttat ttcggCCTTTGGCAGAAAAGAATTTCTGCTAGATGTAACATTATCATCGG TGTTTTTAAAGACTAAAGACGGTCATAATTTATAATGAATTATGagatta aaagctttaaatggTGGTAATTATTCCATATGGATGAAGAAATTAGTCTA CAAAGAAAGTCATCAGATGataatttggaaagaaaaaagtatCATGGCTG AAAAGAATTATACTGTCCATTCATCAACAGTAATAATTGCATACCTTATC GGagaaatgtcgggggaaagtgacgaaaattttgagggggtgacgaaatt ttcccccgacgaatttttcccccgatattttatcacccgaccaaaacttt tacccaattttttaaaccccaaccaaaatctaatttttttacacctttat taaccgaaattagttctttaaacgtcgaattacaagatcttttttcgagc tagtgaaggaaaccatttcatttggacaatttatttgggtgaaagtgact aaattgtaaatttcgtcggggaaaagtgacgaatttgaaattttggtcgg gggaaagtgacgaaaatgcctctaggtgacgaaatttttccccgacgaaa aaaaaccccgactaaataaaactccgacatttttttccccgataaggtac gtttttttataagaacatttttgaagccttaagatgttctcaagtttttg agttttaagcctaaaaatgctcttaacatgttcttttttCACCATTCTCA ACttgcttttaacattttggccatggaAGCCTTACAATCTTATATATTAG TCTGTTCttgtataaaaaaacgtgtatacgtTTGTTCCCAAATATCCTTt ctaaaatttcatcattgatatttctaacattttcatatataaaatattct taacaataTTCCTAGGTTAGGATCCAAACCCAACCTAAGTTTAACATGCA TACCTTGAGCAGGAATATGGCGAAAGTCTTTGAGCAATAATGGCTTTGGA TAATAGACCATTTTACACTAACgaatgctctaaaaatgtcCTTAGGTTCA GTCTCCTGATTTCACGATGGTGattatattttggccaatttcaccATGAA TATTTTAGAAGTATTTTACTTAAATCCATTAACAATAAAAGCTGCTTTCA ATTAGCTTTGGCATTCGCAGCAACAAAGAGTATCATGATTATCATTTTTC TATTTAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttttacaaaa ttcctTCATTTTCTTCAGGTAAGGTTAAGGAGACTTCTGATTAAATTATT GAGGGctagtttttattttgaaaatttatctttGTATTTCTTACTAAAGA TTTCATCTAATATTTAGCGAAGATTCTGATACATTCTGTTTGCGAGATTT CTTTAACAATCTATGCTGTAATTTATCcgtgaaaaattttctgtttcgtT TTCTTTCAGTGCGTTGGTTTTCAAATTTGGTCGGACTGAAGACGACTTCT AAAACGTATTTATATATCTGGCGGTACTTTTTCTCATCGCATCATCGTCT CTACTCATCAATCGTACAATCTCCATAGAGATTTAAATCTATGTGCATAT CTATGTTGGCATTGTTTATCTTTCAAAAGGTTTTAAGCAAAATAAGACAC AAACTTCCGCTTCGTATAATCTGATAGCGTTTAAATTTTCTCTGAAGGGA TTTTGATTGCCGAATTTTAATGTTCAAGGTATCATAAGAGATAAATACTT TACTCTTCTTTTATtcacgattttttataagaattagtAAATTTTGACTG AGACTCGGTTGCtcttattttgtttgtaattttcacacttaaattttctt aattgtTCTTAACGCTTCTTAATGTTCTGtcttttttcctgtttttgcTT CGAAGAGGCTTAAATCAGAATTTTATCAGTCATTTCTGAAATCGAAGGCT GGGGTCGTTCGTTGATAGGCCAAAGACAATCGTTTGCCATGGTTGTTAGA TTacctaaaaagcttttactttacaaGATAGTGAAAAGAATCCGTGAGCC ctagcaacctggttgcttatttaaaaatgtttaatagGACTTTCTACCTG CTAAGAACGGACAGTGTCCCCATGCAATGGGCTTTGCTGCAACTtccttt ataaaaacaaagtatataagaacaaaatatttcaGAGGCTAAGCAGCTTT GTAAGAATTCGACAATTCGACTATTCTTTGCTAACTCCAGAACATACAAC TTCCTAGGGAAACTTTGccaatattcatgatatgcaccattgcaatgttt tccacggacccaacagctgattggtttgTGATGTAATGTCGGAAGGCATT GCAAtcgtgcatatcatgaatacagagGAAATGACAAATGTTTTAAAGAC ATTTTCTGTTCTTAGTGTAACTAGAACTTTCATGGTTCGATTCAACTCAT TACTTTTCAGCATTTTTAGCATATGAATCTTTATTAAATTGTTAGTGATT TTTTTACGAagtgtttttctgtttttgtgttATTTATTTCAACATTTACG AATTGTAGCAAAAGTAACTATTGTAAATATAAGTTttatatcaaaaagaa aaaaatcgaacagTATGATTTTCAGTATACATTTCAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013554TCONS_00013554Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013554-proteinTCONS_00013554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:188402..193588 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TMEM50APREDICTED: transmembrane protein 50A isoform X1 Homo Sapiens
TMEM50Btransmembrane protein 50B Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.56 19.88 40.66 44.68 23.52 15.97 17.24 19.58 15.01 14.55 14.84 14.91 12.81 12.04 13.79 11.57 18.58 18.1 17.36 20.94 20 18.81 20.13 19.86 13.21 17.5 14.02 10.98 15.48 14.28