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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013554 ID=TCONS_00013554|Name=TCONS_00013554|organism=Clytia hemisphaerica|type=transcript|length=1749bp
AACAAACTGCCAGTAAAAAATAGTAATATTATATGGTTACAAGAAAGCCA
AATCAAAGGGTAGAACCATTTTTGCTTatgttttcctttgtttttatttc
atagTAAATATAATAACAAAATACTTTTTGTAAAAAGAAACTCGAAATGT
CTGGTTGTTTGGATAATGCAAATTGTCCTGAAATCAACTGTCCTGACCTC
tcagaaaaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGttttT
TATTGGCTGGTGGTTTATTATTGATGCTGCAGCCAACACACCTCTTGATA
AGAATGCTTATCACACATGCGGCGTCGTCTCTACTATAGCTCTCTTTATG
ATAAATGCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAGGAGG
TTGTCTCGGACAAACAGGAGCAAGGATATGGTTGCTTCTTGGCTTTCTTC
TTGGTTTCGGTGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGATTAT
GTAACTAAAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttttaca
aaattcctTCATTTTCTTCAGTGCGTTGGTTTTCAAATTTGGTCGGACTG
AAGACGACTTCTAAAACGTATTTATATATCTGGCGGTACTTTTTCTCATC
GCATCATCGTCTCTACTCATCAATCGTACAATCTCCATAGAGATTTAAAT
CTATGTGCATATCTATGTTGGCATTGTTTATCTTTCAAAAGGTTTTAAGC
AAAATAAGACACAAACTTCCGCTTCGTATAATCTGATAGCGTTTAAATTT
TCTCTGAAGGGATTTTGATTGCCGAATTTTAATGTTCAAGGTATCATAAG
AGATAAATACTTTACTCTTCTTTTATtcacgattttttataagaattagt
AAATTTTGACTGAGACTCGGTTGCtcttattttgtttgtaattttcacac
ttaaattttcttaattgtTCTTAACGCTTCTTAATGTTCTGtcttttttc
ctgtttttgcTTCGAAGAGGCTTAAATCAGAATTTTATCAGTCATTTCTG
AAATCGAAGGCTGGGGTCGTTCGTTGATAGGCCAAAGACAATCGTTTGCC
ATGGTTGTTAGATTacctaaaaagcttttactttacaaGATAGTGAAAAG
AATCCGTGAGCCctagcaacctggttgcttatttaaaaatgtttaatagG
ACTTTCTACCTGCTAAGAACGGACAGTGTCCCCATGCAATGGGCTTTGCT
GCAACTtcctttataaaaacaaagtatataagaacaaaatatttcaGAGG
CTAAGCAGCTTTGTAAGAATTCGACAATTCGACTATTCTTTGCTAACTCC
AGAACATACAACTTCCTAGGGAAACTTTGccaatattcatgatatgcacc
attgcaatgttttccacggacccaacagctgattggtttgTGATGTAATG
TCGGAAGGCATTGCAAtcgtgcatatcatgaatacagagGAAATGACAAA
TGTTTTAAAGACATTTTCTGTTCTTAGTGTAACTAGAACTTTCATGGTTC
GATTCAACTCATTACTTTTCAGCATTTTTAGCATATGAATCTTTATTAAA
TTGTTAGTGATTTTTTTACGAagtgtttttctgtttttgtgttATTTATT
TCAACATTTACGAATTGTAGCAAAAGTAACTATTGTAAATATAAGTTtta
tatcaaaaagaaaaaaatcgaacagTATGATTTTCAGTATACATTTCAA Run BLAST on NCBI protein sequence of TCONS_00013554-protein >TCONS_00013554-protein ID=TCONS_00013554-protein|Name=TCONS_00013554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSGCLDNANCPEINCPDLSEKRNQLASIAAGALFFIGWWFIIDAAANTPL
DKNAYHTCGVVSTIALFMINAVSNAQVRGDTFEGGCLGQTGARIWLLLGF
LLGFGGLIGACWVLFGDYVTKDVPSTWPGVAVFLQNSFIFFSALVFKFGR
TEDDF Run BLAST on NCBI transcript from alignment at sc0000170:188402..193588+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013554 ID=TCONS_00013554|Name=TCONS_00013554|organism=Clytia hemisphaerica|type=transcript|length=5187bp|location=Sequence derived from alignment at sc0000170:188402..193588+ (Clytia hemisphaerica)
AACAAACTGCCAGTAAAAAATAGTAATATTATATGGTTACAAGAAAGCCA
AATCAAAGGGTAGAACCATTTTTGCTTatgttttcctttgtttttatttc
atagTAAATATAATAACAAAATACTTTTTGTAAAAAGAAACTCGAAATGT
CTGGTTGTTTGGATAATGCAAATTGTCCTGAAATCAACTGTCCTGACCTC
tcagaaaaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGGTAAG
TATAtcatattttaaagaatttttaataaCAAATCATGAAATGCATTCAA
AAAAATGTCCCCTCAATGGTCCTGGGAGGGACTAGCAATTTTACTACCTC
AAGTGTATATATTTTCGTGAAGTACTAAATTTTCTGGTGTagttaatttc
gcgaaatttagtactGTTTTGTtagtaaatttttcaagaacACAAAATTA
AGAAAGGAAATTAAcacacaaattttttttaactaggtcgaaagtttttt
tacactGTGTTGACTATTTAGTCACCATTTGAATACagttttgttactat
ttttgcCCCTATTTACATcgtttttcaagcaaaatcagtctctttttttt
tgaatcCTTTTCTTTTAATATATAATCATATAATTGTGAGTGAATCacaa
aatttaatacacgccAAAAATTCCAGAAAGTAGCAATCGCAAAATTTTGT
ACTCATGAAATTCATTTCTCGAAAGTACCCGCAAAAATATATAGAAGTCA
ACCCAAAGACAATTTCATTTGACAGACTTTCGTACCCCACACACGTTTTT
TTGGAATAAATTCTTAATATGTGCTTATGTCAGCTGAAGTGATTGATCTA
TCTGAAAACAAAGCCATAAGTATTTTATAAGTGTGTATTACTTGCagaat
ttcaatttgaaaaatgaatagCACGATCATCATCGCACAATCGCGATATG
GGTATCTATACCTTTTCAAATAGATATCATTATTTGTTTGGTGAACAAAT
CACACAAAAAGAAGTGCTCAATACAAAAGATAgaactttctttaaaatta
tattgttctATGACATGGTGAATAGAACTTTACATTACTCAGGGTCATGT
ACTCAACAATCATCAGATgtaaatgaaaatttataaaccttttcaaatag
aataaaaattaattttaaacaaGCAAGTAAAAAAATGATATGGAAACCTT
AAAAATCGTGATATAAagcaattttttttccttctagttttTTATTGGCT
GGTGGTTTATTATTGATGCTGCAGCCAACACACCTCTTGATAAGAATGCT
TATCACACATGCGGCGTCGTCTCTACTATAGCTCTCTTTATGTAAGTGAG
AACACTCCATGCTCTTCTTATACCCCTTAAATATATTGGTAACCTCCTAA
TTCTGAAACCCTTCTTTAGAGGTAAAAAAGATGAAGGAATCTAGCACTAA
ACTAATTTTTTGTTCTTTGgctaataagaaaaataaataaattgctCAAC
ATATCAATAATACAATTAAAAGAAACTCTGAGATTTGGAACACATCCAGC
ATGTGAGATAACGACAAAgtgcaaaattgtttttttttgttaaaagctAT
GTGATaatctgatttttctgaaaatttttgaacatcTCTTTTTTTTTAGG
ATAAATGCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAGGAGG
TTGTCTCGGACAAACAGgtactttttccttttttatgatCTCAATATGTT
GACAAGCGTAGGTCAAGATCAGgtacttttaaatttttatgatCTTTGTA
TTATTTTTGACAAGCGTAGGTCAGGATTACTTCATTCTTCCAATCAGGAA
CTTCTGGAAAAGTGTGActgtttgtaaaaaatgtataaacaaaaatgttg
aattcttgctcttttgatttttcttattGGAAATTCACGTAAAAAATGAT
GCAAGCCGGGTCATCAAGACAttaattagagcttttttatCTTTGAGAGG
TGACAAAGAAAATAATGTGATGTTTAGGCTATTGTGATATATAGTAAgta
tttcatttgttttgaatttatcaATCAAGTGTTGGTTAGCTCGTTTTTCA
CATTTTAGGAGCAAGGATATGGTTGCTTCTTGGCTTTCTTCTTGGTTTCG
GTGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGATTATGTAACTAAA
GGTGAGTCAAACTTTAGTACATTGTTTATAAGGACAACAAAAAAGTGTAA
TTGGGTGGTAGGGATAGGTAAGAGAGGTGTCATATGTCCTAATTATGACC
TTAAATTAGCTACAGAACGCGTAGGCcttattggcaatatttttttggTG
CTGACTTTCTTGACTTTGATTtgagcaaaaatatttgaagGTTTTGCTAT
TTGCTCATTACCACGAAAGAAATCTACATCACAAAGATCCCAAAttatct
gattatcccttttatAAGTACTGCCTGGTTGGGCAATCTTTGAAACtatt
gaaaaaattatgtttctagaaattatattcattaaaaatataatttttat
ttcggCCTTTGGCAGAAAAGAATTTCTGCTAGATGTAACATTATCATCGG
TGTTTTTAAAGACTAAAGACGGTCATAATTTATAATGAATTATGagatta
aaagctttaaatggTGGTAATTATTCCATATGGATGAAGAAATTAGTCTA
CAAAGAAAGTCATCAGATGataatttggaaagaaaaaagtatCATGGCTG
AAAAGAATTATACTGTCCATTCATCAACAGTAATAATTGCATACCTTATC
GGagaaatgtcgggggaaagtgacgaaaattttgagggggtgacgaaatt
ttcccccgacgaatttttcccccgatattttatcacccgaccaaaacttt
tacccaattttttaaaccccaaccaaaatctaatttttttacacctttat
taaccgaaattagttctttaaacgtcgaattacaagatcttttttcgagc
tagtgaaggaaaccatttcatttggacaatttatttgggtgaaagtgact
aaattgtaaatttcgtcggggaaaagtgacgaatttgaaattttggtcgg
gggaaagtgacgaaaatgcctctaggtgacgaaatttttccccgacgaaa
aaaaaccccgactaaataaaactccgacatttttttccccgataaggtac
gtttttttataagaacatttttgaagccttaagatgttctcaagtttttg
agttttaagcctaaaaatgctcttaacatgttcttttttCACCATTCTCA
ACttgcttttaacattttggccatggaAGCCTTACAATCTTATATATTAG
TCTGTTCttgtataaaaaaacgtgtatacgtTTGTTCCCAAATATCCTTt
ctaaaatttcatcattgatatttctaacattttcatatataaaatattct
taacaataTTCCTAGGTTAGGATCCAAACCCAACCTAAGTTTAACATGCA
TACCTTGAGCAGGAATATGGCGAAAGTCTTTGAGCAATAATGGCTTTGGA
TAATAGACCATTTTACACTAACgaatgctctaaaaatgtcCTTAGGTTCA
GTCTCCTGATTTCACGATGGTGattatattttggccaatttcaccATGAA
TATTTTAGAAGTATTTTACTTAAATCCATTAACAATAAAAGCTGCTTTCA
ATTAGCTTTGGCATTCGCAGCAACAAAGAGTATCATGATTATCATTTTTC
TATTTAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttttacaaaa
ttcctTCATTTTCTTCAGGTAAGGTTAAGGAGACTTCTGATTAAATTATT
GAGGGctagtttttattttgaaaatttatctttGTATTTCTTACTAAAGA
TTTCATCTAATATTTAGCGAAGATTCTGATACATTCTGTTTGCGAGATTT
CTTTAACAATCTATGCTGTAATTTATCcgtgaaaaattttctgtttcgtT
TTCTTTCAGTGCGTTGGTTTTCAAATTTGGTCGGACTGAAGACGACTTCT
AAAACGTATTTATATATCTGGCGGTACTTTTTCTCATCGCATCATCGTCT
CTACTCATCAATCGTACAATCTCCATAGAGATTTAAATCTATGTGCATAT
CTATGTTGGCATTGTTTATCTTTCAAAAGGTTTTAAGCAAAATAAGACAC
AAACTTCCGCTTCGTATAATCTGATAGCGTTTAAATTTTCTCTGAAGGGA
TTTTGATTGCCGAATTTTAATGTTCAAGGTATCATAAGAGATAAATACTT
TACTCTTCTTTTATtcacgattttttataagaattagtAAATTTTGACTG
AGACTCGGTTGCtcttattttgtttgtaattttcacacttaaattttctt
aattgtTCTTAACGCTTCTTAATGTTCTGtcttttttcctgtttttgcTT
CGAAGAGGCTTAAATCAGAATTTTATCAGTCATTTCTGAAATCGAAGGCT
GGGGTCGTTCGTTGATAGGCCAAAGACAATCGTTTGCCATGGTTGTTAGA
TTacctaaaaagcttttactttacaaGATAGTGAAAAGAATCCGTGAGCC
ctagcaacctggttgcttatttaaaaatgtttaatagGACTTTCTACCTG
CTAAGAACGGACAGTGTCCCCATGCAATGGGCTTTGCTGCAACTtccttt
ataaaaacaaagtatataagaacaaaatatttcaGAGGCTAAGCAGCTTT
GTAAGAATTCGACAATTCGACTATTCTTTGCTAACTCCAGAACATACAAC
TTCCTAGGGAAACTTTGccaatattcatgatatgcaccattgcaatgttt
tccacggacccaacagctgattggtttgTGATGTAATGTCGGAAGGCATT
GCAAtcgtgcatatcatgaatacagagGAAATGACAAATGTTTTAAAGAC
ATTTTCTGTTCTTAGTGTAACTAGAACTTTCATGGTTCGATTCAACTCAT
TACTTTTCAGCATTTTTAGCATATGAATCTTTATTAAATTGTTAGTGATT
TTTTTACGAagtgtttttctgtttttgtgttATTTATTTCAACATTTACG
AATTGTAGCAAAAGTAACTATTGTAAATATAAGTTttatatcaaaaagaa
aaaaatcgaacagTATGATTTTCAGTATACATTTCAA Coding sequence (CDS) from alignment at sc0000170:188402..193588+ >TCONS_00013554 ID=TCONS_00013554|Name=TCONS_00013554|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at sc0000170:188402..193588+ (Clytia hemisphaerica)
ATGTCTGGTTGTTTGGATAATGCAAATTGTCCTGAAATCAACTGTCCTGA
CCTCtcagaaaaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGt
tttTTATTGGCTGGTGGTTTATTATTGATGCTGCAGCCAACACACCTCTT
GATAAGAATGCTTATCACACATGCGGCGTCGTCTCTACTATAGCTCTCTT
TATGATAAATGCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAG
GAGGTTGTCTCGGACAAACAGGAGCAAGGATATGGTTGCTTCTTGGCTTT
CTTCTTGGTTTCGGTGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGA
TTATGTAACTAAAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttt
tacaaaattcctTCATTTTCTTCAGTGCGTTGGTTTTCAAATTTGGTCGG
ACTGAAGACGACTTCTAAATGTCTGGTTGTTTGGATAATGCAAATTGTCC
TGAAATCAACTGTCCTGACCTCtcagaaaaaagaaatcaacTTGCTTCAA
TAGCAGCTGGAGCCTTGttttTTATTGGCTGGTGGTTTATTATTGATGCT
GCAGCCAACACACCTCTTGATAAGAATGCTTATCACACATGCGGCGTCGT
CTCTACTATAGCTCTCTTTATGATAAATGCAGTTTCAAATGCTCAAGTGC
GTGGTGATACGTTCGAAGGAGGTTGTCTCGGACAAACAGGAGCAAGGATA
TGGTTGCTTCTTGGCTTTCTTCTTGGTTTCGGTGGATTGATTGGAGCCTG
TTGGGTTTTATTTGGTGATTATGTAACTAAAGATGTTCCGAGCACTTGGC
CTGGGGTGgcagtttttttacaaaattcctTCATTTTCTTCAGTGCGTTG
GTTTTCAAATTTGGTCGGACTGAAGACGACTTCTAAATGTCTGGTTGTTT
GGATAATGCAAATTGTCCTGAAATCAACTGTCCTGACCTCtcagaaaaaa
gaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGttttTTATTGGCTGG
TGGTTTATTATTGATGCTGCAGCCAACACACCTCTTGATAAGAATGCTTA
TCACACATGCGGCGTCGTCTCTACTATAGCTCTCTTTATGATAAATGCAG
TTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAGGAGGTTGTCTCGGA
CAAACAGGAGCAAGGATATGGTTGCTTCTTGGCTTTCTTCTTGGTTTCGG
TGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGATTATGTAACTAAAG
ATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttttacaaaattcctTC
ATTTTCTTCAGTGCGTTGGTTTTCAAATTTGGTCGGACTGAAGACGACTT
CTAAATGTCTGGTTGTTTGGATAATGCAAATTGTCCTGAAATCAACTGTC
CTGACCTCtcagaaaaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCC
TTGttttTTATTGGCTGGTGGTTTATTATTGATGCTGCAGCCAACACACC
TCTTGATAAGAATGCTTATCACACATGCGGCGTCGTCTCTACTATAGCTC
TCTTTATGATAAATGCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTC
GAAGGAGGTTGTCTCGGACAAACAGGAGCAAGGATATGGTTGCTTCTTGG
CTTTCTTCTTGGTTTCGGTGGATTGATTGGAGCCTGTTGGGTTTTATTTG
GTGATTATGTAACTAAAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtt
tttttacaaaattcctTCATTTTCTTCAGTGCGTTGGTTTTCAAATTTGG
TCGGACTGAAGACGACTTCTAAATGTCTGGTTGTTTGGATAATGCAAATT
GTCCTGAAATCAACTGTCCTGACCTCtcagaaaaaagaaatcaacTTGCT
TCAATAGCAGCTGGAGCCTTGttttTTATTGGCTGGTGGTTTATTATTGA
TGCTGCAGCCAACACACCTCTTGATAAGAATGCTTATCACACATGCGGCG
TCGTCTCTACTATAGCTCTCTTTATGATAAATGCAGTTTCAAATGCTCAA
GTGCGTGGTGATACGTTCGAAGGAGGTTGTCTCGGACAAACAGGAGCAAG
GATATGGTTGCTTCTTGGCTTTCTTCTTGGTTTCGGTGGATTGATTGGAG
CCTGTTGGGTTTTATTTGGTGATTATGTAACTAAAGATGTTCCGAGCACT
TGGCCTGGGGTGgcagtttttttacaaaattcctTCATTTTCTTCAGTGC
GTTGGTTTTCAAATTTGGTCGGACTGAAGACGACTTCTAAATGTCTGGTT
GTTTGGATAATGCAAATTGTCCTGAAATCAACTGTCCTGACCTCtcagaa
aaaagaaatcaacTTGCTTCAATAGCAGCTGGAGCCTTGttttTTATTGG
CTGGTGGTTTATTATTGATGCTGCAGCCAACACACCTCTTGATAAGAATG
CTTATCACACATGCGGCGTCGTCTCTACTATAGCTCTCTTTATGATAAAT
GCAGTTTCAAATGCTCAAGTGCGTGGTGATACGTTCGAAGGAGGTTGTCT
CGGACAAACAGGAGCAAGGATATGGTTGCTTCTTGGCTTTCTTCTTGGTT
TCGGTGGATTGATTGGAGCCTGTTGGGTTTTATTTGGTGATTATGTAACT
AAAGATGTTCCGAGCACTTGGCCTGGGGTGgcagtttttttacaaaattc
ctTCATTTTCTTCAGTGCGTTGGTTTTCAAATTTGGTCGGACTGAAGACG
ACTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013554-exon-sc0000170-1491911889:188402..188646 | TCONS_00013554-exon-sc0000170-1491911889:188402..188646 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:188402..188646 | TCONS_00013554-exon-sc0000170-1510915933:188402..188646 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:188402..188646 | TCONS_00013554-exon-sc0000170-1575043694:188402..188646 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1491911889:189639..189742 | TCONS_00013554-exon-sc0000170-1491911889:189639..189742 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:189639..189742 | TCONS_00013554-exon-sc0000170-1510915933:189639..189742 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:189639..189742 | TCONS_00013554-exon-sc0000170-1575043694:189639..189742 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1491911889:190051..190118 | TCONS_00013554-exon-sc0000170-1491911889:190051..190118 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:190051..190118 | TCONS_00013554-exon-sc0000170-1510915933:190051..190118 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:190051..190118 | TCONS_00013554-exon-sc0000170-1575043694:190051..190118 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1491911889:190510..190602 | TCONS_00013554-exon-sc0000170-1491911889:190510..190602 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:190510..190602 | TCONS_00013554-exon-sc0000170-1510915933:190510..190602 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:190510..190602 | TCONS_00013554-exon-sc0000170-1575043694:190510..190602 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1491911889:192159..192219 | TCONS_00013554-exon-sc0000170-1491911889:192159..192219 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:192159..192219 | TCONS_00013554-exon-sc0000170-1510915933:192159..192219 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:192159..192219 | TCONS_00013554-exon-sc0000170-1575043694:192159..192219 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1491911889:192411..193588 | TCONS_00013554-exon-sc0000170-1491911889:192411..193588 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1510915933:192411..193588 | TCONS_00013554-exon-sc0000170-1510915933:192411..193588 | Clytia hemisphaerica | exon |
| TCONS_00013554-exon-sc0000170-1575043694:192411..193588 | TCONS_00013554-exon-sc0000170-1575043694:192411..193588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:188402..193588 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007919 | UPF0220 |
Blast
BLAST of TCONS_00013554 vs. Swiss-Prot (Human)
Match: TM50A (Transmembrane protein 50A OS=Homo sapiens GN=TMEM50A PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.891e-53 Identity = 98/156 (62.82%), Postives = 114/156 (73.08%), Query Frame = 3
Query: 147 MSGCLDNANCPEINCPDLSEKRNQLASIAAGALFFIGWWFIIDAAANTPLDK---NAYHTCGVVSTIALFMINAVSNAQVRGDTFEGGCLGQTGARIWXXXXXXXXXXXXIGACWVLFGDYVTKDVPSTWPGVAVFLQNSFIFFSALVFKFGRTED 605
MSG L+ C E C D EKRN +ASIAAG LFF GWW IIDAA P K ++YH CGV++TIA MINAVSN QVRGD++ GCLGQTGARIWL +GF+L FG LI + W+LFG YV K+ +PG+AVF QN+FIFF LVFKFGRTED
Sbjct: 1 MSGFLEGLRCSE--CIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTED 154
The following BLAST results are available for this feature:
|
