XLOC_007898 (gene) - C. hemisphaerica

Overview
NameXLOC_007898
Unique NameXLOC_007898
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000181:28203..38655+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007898 ID=XLOC_007898|Name=XLOC_007898|organism=Clytia hemisphaerica|type=gene|length=10453bp|location=Sequence derived from alignment at sc0000181:28203..38655+ (Clytia hemisphaerica)
AACTATGAATTAGAGCCTGGTTAAATCTATTTCAGGTATGGTAaagattt
attattttcttaCTATAAAAGTTTTCGATTGATGttctaaattttgatat
ttttctaacgaCTTTTTGCTGCGGCGACAagggcaatattttcaagtCAA
GTCAAGatgaaatcattttcaaaaaaggaaagatTCCACTAATTAAGAAC
GATTCTCACAGAAATacaaaagaagtaaaaaattttcccttGTTGGCCAA
CGTGATTTTTGGTCGGAGCCGGCTTTTTAAGTTAAACTATTTCTTTGTAT
GATGTCGTGGCCAACCAAAGTAAAACACTTTGAAACGGGTGCAATATTTC
ACTTTACATGTAGGTCAGATTTCTTTTGCATTCTTGAAGCCTATTTGTAT
TATAGACAAGGATATGTTGTGTagtatcaaattttgaaataaagatggtg
gtttttcaaagaaacctttaaatttttacaGCTTCTCGTGCTTGaatcgg
attaactttcacGAGCCCAAAAAGTCTCGAAGTTGTTTGGATTTATACTG
TATCGCGTGAATTTAGtttcgcgaataagcctgaAACAAGTTGAAAACTA
ACCTTATaaatgccattttttgtctAAAATAGGAAACTTGTGATTGTTTT
TTAGCaccgaaaaaaaaagaagataatttagtaaaaatttttggcgttga
tttattttcgcgaCCTAACAATCACGATTGAAAACGATTTCGTTAAATTC
ATTTTCgtgaaaaaggtaaaaataaatttgaggAAATGCTCAACTGCGCG
AAATTGAATCTCTCGACAACAATTAATCAGATTAAAAcaacattgcaatg
tcttttaAGAAGTGTCATTTTTTCCTCTGCCACAGTAAATCCTCAACTGT
CCAATGCGAGGTTAATCCTGAAAGTTAAATCTAGAAAGTCCCATCCATAC
TTTTTTGGTTAGCTTTTGTGCCTTGCTCAAAGCAGTTGAACCTTGTAAAA
ACAtactttgtaaaaaaattgtgtttttgctCATTTCAAAGCACAATAAT
TACAAATTTTATTATTCTTGCACTTTGTAATGATTTGTTTATTTAGTCAT
TAGTTTAGTGTTATTATATCCAGTCTCTAGGGTAAGTTTTTTCAGTAATA
GGCTAAGAGCGAGTGATCAAGGTTTTATTTTCGTTATAAAAGTAGCTGAT
TTAGGACAGAGACATCTACTGCAATATTCATTTACAACAAAGATAGAGTG
ataggaaatttgaaaaaggataGAAAGATAAAATTATCCAATATGTAAAT
CAATATGTAGCATCATCAGAAACTGAAGATTCATTTATGTTTATAAAGGG
TTTGGGGTGGAGATCTCTATTTTGCAGTTGATACCGTATCTTGTATGAGA
TCGACACTCATATTATATTGAATATTCAGAATaaataccgtgaagtcggg
taacttgcatcaatgaagggaaacttgcatagccatcaaatggcTGACCA
ATCATaccagcaaaattttaaaacaaatgatCTACGCAGTTCCgatcgca
gctctactctatcatttttgttttgatttaactttgtattttaatgacca
gacaggtcattcatttgagggctatgcaagttacccgatctctcGGTAGA
ATTTACACGGATAATATCTACGCGGATTATTTACCAACTTTGATTTTCAG
TTAAAAATTCGACTTCCAACAGATCACAACATGCCACACCTTCGGATCCA
CACTAACCTCACCAAAGATCTTTTCACTGAAGAATTCATCAAAAATGTCA
CTCAAAAACTTGCCACAGTATTTTCATTGCCGCCTTTTGTAAGTGAATAT
TTTGTTTGATAGGgcataccttaagggaaaagttttcgcgagaagaaatt
ttcgcggaattcaATTTCaagaatcagagtttcaaaatggcaaatttcgc
ggaatttgagTCAGAAGTTATAGATTCAGATGaacttttaagcatcacgg
agttgtttatatttgtttatatttgataaaatacaCGTTacatgcttaaa
aatcaattgtgtccatgttttttggtaatacctggtcaataataacaaca
aaataaaataaaaaaaaatcgaatttcgcggaatttaatttcgcgaatta
cgcccgaattcgcgaaattaaattccgcgaaaatttcttcccttaaggta
cacgtttttttataagaacaaactttataagaacataaggctttgatggc
caaaatgttacgcctagttaagagcattttaaggctttgtggactctaaa
acacccaatttcttaggaaaatggacaaaaataatcaaaaaaaggtgaac
atgttaaaaacatttttaggcttaaaattcaaaaagttaagaacatccaa
aggcttcaaaaattttggatgttctttttttttttttttttttttttttt
ttttttttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggattatattt
aaaaaagatattttgtaaaacaagaTCGGTTTAGTAAcctttgtaataaa
ccaaaccaatgtatgagcgatttatagaggcccatgtgcatgaacggtgg
cctggaaatctgtaaaacattattattattattattattattaaaatcgt
catttttggtctaactcgtagtaATTGGATTGGGTTCatgatcaagcaaa
aaaaaaatcaaaagtgagtctttccagaaagattttaagccaaaattcaa
aaaaatgtaaaaaattgacaaaaacccaCTTTCGGCCCTGTaatacttga
ttctgtcctctagcGAATTAAGTTTTACCATTGGgcatctttctatcatt
caggcaggtccgcgcAGTGTTAATTTCCCTTACCTACCCCCCTTAGCCCT
TTAACTGCtgttcgtattttttaaggttcgacctatttgccagatgtcgg
catatgccgacatgggcaaaaggtagcgattttgacttcattttctgaat
aatatatgaagtatcagccaaggactataattttgagttgaacatagttg
aatatttatttttcaacatagaaaagctgttaactattatcttttttcat
ttcaaaccatctaatacaaaatctttgtagaagtgttaaattttgcggca
aaggaatggaaagtacccatgtcggcaaatcccgacatcggcaaagaaat
ggaaagtgcccatgtcggcaaatcccaacatcggcaaagaaatcgtctgt
ccagatataattggcagtggaaacaagaatgcctgtaacttttaatagtg
aaatataattccaaaatttttttttgcttgttttagaaaatcaaaagcgc
tatatttgaatgtattttttgttgaaaaattcgcgagttttagcggttaa
atctgcgattgcaaaaattgagcttctttctttttatgctataacgttca
tttttaaacTAGTGGTAGTTTAACCTTAGGTAAAGAaggtttttgaattt
caaggcaaactgaaaagtccttcggaagatatgggacccgaaatacccct
tggtagcacttttctgtgaaatatcaaatctccaaatttttactaaaaac
gggggttatgttatctttttttgaataacGCATTGGcgttattggtatca
ttgatcatTTCGAAACAAAGTGAATACACAATTTGAttgttaatttcgca
tagcgaaagtattacgatagtctttctatgtatgtatgtatgtatcgaga
aaatttttggggcgcaaattatggcgtgggcgtttgNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAATGTA
AAAAAAATGgacaacaaggtaataaatcaaactaatcgagcttcaatcaa
acttcaccgatcttgatacaccttttgctaattaggaattttattttgaa
tcatggtaccattgtttgtataagattcccatttccgcactaagattctt
gttacttttctggaatctttcccctatattTTTCACGGGATAAACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacag
cacaggtatgatctttttttccttttttcaacagatagttatgtgttaat
agtgaaaccagttgtgacaaacagtcagttttagcaagtatttCTTGGAG
AtaatgtcaattgaaattcagcaatcatttttgtataatcgaaaCGACCC
TGCCTAGACACTGCCGTACATTATTGTACGGTGGGTACAGTGGGTGTACA
GCAGATTTAAAATTAACCTATTTCCACCGccgtacaaaggacatttagat
ccagcacaatgtacagcggtcgtcagcggtccctcgttaatgatgacagt
tttctattcgattaagtttgattggtgttcgaagagtttggttagtaaaa
gttccagcttttccttcccgatgggatgatagatattggctcgctcttta
agctttagcgtgggcgtctgctaataagccgttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAtttgtttacgctttatagaatgga
attctttagtcgcattatttaaggaatctttttttaatggattgagattt
ttcataaaaaaaacagggtatctatgacctgtgtgtacaatacattctct
atattttgttcaaaatgcataatgctgcaggagtcacgtttcacgcgtct
tcatcgttgatgttcaagtattatgcgaaattttcgactttaagtcgtct
tgttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNttgattgtttttattgaaacgatAAGCACATTGAACTTacattgcctt
tgttatttttaagtaatTATAGAACTTTGCTACTTCCCAAAACACTTTGC
ACAGTTTGACAATGAGGTCATGAAATGAATGTTATAATATATgattgaaa
aactgttttatcatcactacccccgtttttattaaaaatttggagatttg
atatttcacagaaaaatgctaccaaggggtatttcgggtcccatatcttc
cgaacgACTTAtccgtttgccttgaaatttaacaatcTTCTtgacctaag
gttgaactaccactggtgtaaaaatgaccGTTGTAgcattaaaagaaaaa
aagctcaatttttgcaatcgcaaattaaaccgaTAAAACTCGCGAatttc
tcaacaaaaaatacattcaaatatagcccttttgattttctaaaagaagc
aaaaacattttttgcaattatattggactatcaaaagttacaggcattct
tgtttccactgccaattatatctggacagactttagcgattttctttcaa
aaacttagaaaaaaatgaccgtggcacttaaagggttaaatatCGACTTC
GTGCTTGTTGGAAACATAGTCTTGAGTGGAATAtcgatcaaaaagaaaaa
aaagaaaaataaatttggaaaatgaagatgaaaaatgcaaGATAGGCAAG
TTCTGTAGTAGCCTTTTTGTTGACGTTTACAGTCATTTTAATGAGAGAAT
TTTAagtgtaatagaccttttcataaattacgtcacaaacatcacttgcc
tcgttttgaaattattgccatggtgaatAACTCCCAACGCATTTTATtta
ctttctatttataaaggCAAAAAATGttggtgacgtaatttatgaaaagg
tctattgctgATTCTCCTTGATTTATCATTTTGTGAAAGTATATAAATCT
TTATtaacttcaaaattttctaaaaaacttttaacaatttttacacaggc
tgttttgttttcattgaGTGCCAACGAGACGTTTTACTATGTGGATAGTT
TCGATCCTGCAGCATTCATTGTACTTGGTAACCTTGCCGATGCACCAGAT
GAAGAGCAGAATCAACAATGTGCTGAAATCATCTTTGAAGCAATGAAAGA
AGTTGGAGTACCGCAGAACaggtttgaattttttctatTATCCTGTAAGT
GCAACTTGAATTATAGTTACCTTTAGGTTCATGGATCTTTATAtaccaag
ctatatccaccgTCTTTGATTGGAGTTCCTAGAAAAGTGGTAGGCTTAAC
GGCAGCACTACCCGGAATGTTTTTCACCAACACTGAAAAGTGCTACCAAT
CAGAGTACCACTTCAAAAaatctccgatcaaagattttgcttacCCGGGA
TCGAATTTAATTCATTTAATAGACTAGAGtttacttctgactgaactttg
ctttctgctCTGATAGTTTTCGTTGGCGTATTGAAATAGTTTAGAGGATA
TGACCATCTtggaattttttcatttttgttttcaaaaatcatatcAAACA
CAGAAACAATCTAAAACTccatcaaaatttatgaaattataATGAAATCA
CAAAACTACCTcccaaattaaaaagaaatgctCAATTGATCATAGATTcc
atttgtttttctccaaaaggggactggatctagtggtatGGACATGTTCA
TAAATGATGAGTAAATATCGGCCTTTTGGAGACATTTGAAATGACTGTTA
CAATTTTACtcatgataaaaatgtaacaaaatttcAGAGGTCCTAGCTGC
TGCAGTGGTTAAGCTATATCGCTGAGGTTTCTTAAGATAATCTTGTATCA
AAAAGAGACTTGATTGAATTGGAGCTATGAAGGTTTGTTTCAGAGTCagt
gaaatgataaaaaagtaacaagcaagaaataaataagatgataaaaatgg
CCATAACTCATGAAATATGTATTGTGAAGATGTGAAAATGTTACACATCA
CAGGTTATACATACACGGACCTTCATTTTGAGTTTCATGCATCAATGGCT
GCTCATCTGATAAAAAAGTAACATTTTAAATCCTTGAAATTGATACTTTT
AAGAGCCCTTGAACCAAACAAAATccaagtaaaattatttttctttcgtg
GTTTATTGAACAAAATAGGTTGGAATTGtgctttatatatttttttaaat
tgtagaAGGCCTAAATAGGGTAATTTTGTAACATCAATTTCAACTCTTTC
ATAATATTGGcatcttttttatatatgttaCATTTTTACATGATTGACAT
TAAAGAGGTTTCAGAGATGAATTTTATTTCTTCAGAAGGAAAGTAACGTA
CTAAAGCACTAGTTTTCATGTTAATAAGTCAACAGTACTGGGTCATTTAG
TGGtaataaagtaacaaaattgtttttttttcgcaatttttccaagtttt
gttacaaatttatcatgtttttatcgACTTTTAAATAGGCATTGGATGGT
TTTAACTAGCCATAGGGTCAATGAATGGAAATAGTGACCCTCCATGTCCT
CAAAAGAGTCTCAATTTGATAAATATGTAACAGGAATTCAAGAGTACAAA
CAAACATGAGTCTAAACTTGTAGTATANNNNNNNNNNNNNNNNNTCAATT
TGATAAATATGTAACAGGAATTCAAGAGTACAAACAAACATAAGTCTAAA
ATTGTAGTATAGACACCCTGTTTGTTACAGATTTACCATTTTAAAACAGA
CAAAGAAAACATGACAATACAAAAGACATGATATTGGTCTTAGGGTCAAT
TTAGATTAAAGAAATATCCTTCTTGTCACCAGTTAAATTTCTTTAATGGT
CTTTCAACAACAAGTGCGCGCCTTGTCCGGTACTAAACAAGTTTGTGGTG
TTACATTTTTACCCAAATGCAGcgttttttgaaattaaagacATATTTTT
AAAGGTCATAAGCCTCGTTAATATTTCCCCCAAAGGAGGGCCTTTTTTGG
TGAGATTGACatgattaaagtgactttaggTACTTTTTTTGCTATTTGCT
AATACTGTTactattttatctttttcttagcCGTAGATGTAGACCCTGTT
ACACTATTGCCCtctattgattttttattttcttatggATAAAACTAACC
ATTTGAAGAAAATCGAACAATGAAAACAACATTGAACTTctttaataata
aaaaagttacaattgTTACATTTTTACCAATAGCAGGCCCGGGTAAGGTA
TATATAATGGTCAGTAGTGTAAACCCTTCAATTCAATTCATCATTAAATA
CTACAATGCTGCTTTCCCTCCTAAGCCAACTAATGAATATACTCtttttt
tacagccaaaaaTATGACATTTTTCAACTATACCTTTTCTTCTATTAAAT
CGTCTCAAATGGTTTATCAGTTTATCTTGTGTATTTCACGAATTTTTACC
AACAGattcatttctttcaatttttaggATTGATATTGCATTCAATTTAT
ACCCAAAAACATGTGTTGCTATGGACGGAAAAGTTTTCTCGAAATGGAAG
CGTTATCAACAAAGTTGATTAAAATGGCTGGAAAAGAAGCATTGgaccca
aaaaataagaacttaAAGAAGCTAGCTTTATagtaatttgttttgaaata
ataCTGATACGCCGCTAAACATTATGTCAATGGGTAAACCATCATGATTT
AGAATGTAAAAATTTAGGTTCTTATTTCTTACTAAAATTCTTACTTACaa
tgtacactttttttataagaaccagtaaatttttgatgagcCTCGGCTAT
TCTTATTTGTTTtacactttgagcctcaaattgttcttatcctgttttta
tttataggataaaattgagttatttaggcttcatacccaatttttactgc
TTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014099TCONS_00014099Clytia hemisphaericatranscript
TCONS_00014100TCONS_00014100Clytia hemisphaericatranscript
TCONS_00014101TCONS_00014101Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014100-proteinTCONS_00014100-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:28203..38655 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.07	8.17	7.34	8.42	13.71	10.83	5.56	4.71	3.79	5.56	3.66	4.13	3.2	5.4	6.52	5.2	3.99	5.15	1.69	1.66	5.66	5.43	8.1	7.12	1.42	2	3.6	4.78	8.76	10.02