XLOC_008098 (gene) - C. hemisphaerica

Overview
NameXLOC_008098
Unique NameXLOC_008098
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000188:28221..37008+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008098 ID=XLOC_008098|Name=XLOC_008098|organism=Clytia hemisphaerica|type=gene|length=8788bp|location=Sequence derived from alignment at sc0000188:28221..37008+ (Clytia hemisphaerica)
acaacaaaatacatcccttggtctttgggtttgtttctgacatttttcca
tcaaagaatatcgatctctttccttttccccttgggcgcgcgagaaaaaa
atgattagcttgcATTCTTGCGAGGGGCAAATTAAGATGAGGcagcaatc
ttgcactgagggtgctacttagtttagGACCCTgctgacgcaccggactt
aacaaaCACCGGACAcacgaaagtccggtgtaaaatgagaatttttttta
ccaccagtCAAtcgctacaccggacttaaggaagtggGATGTCGGAGAAG
GAtgtttttccaccggacaatcaaaacaccggacatgaccagtccggtgc
gtccggtgttttttaattttttgtttcataaatgtccggcgtacaaaatt
ccctgtattagggtgcgcactcgtcaggattttttgcgcggaacgaggaa
gaatttacaaaaatgaacttcaatgcattagtacttacctttaaatcaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgaaaatggaataactttgggaatacttaaccaattctaat
aaatgacccctcatttttctcacaaaggtaaggactttcaaataaaatta
gtttggtttttttAAAATTGAGGGGGAAATTTTGTCCTGTCCACCCTACC
TGTATGCAACACCaaactgacaccggacttattgcgtccggtgtagcgaa
aggactttttgccaccggacaaatacaccggacagtccagTGCGTTGGCA
GGGTCAGTTTCCACCCTATTTTGTGCAATGTCGTTTTGTAAGTGTTAATT
TTCTGacagatacaaatagtatattgaatattattaacttatttttttaa
gtatttttgagctcaaatttaaatattcggttaaataaaaaacaaatgac
agcagttctgtttttccaCCGGGAAAAGTTGtcttgccgacttagctatt
ttacaaatttaggaaagaactcccataggaattccgatacataacccgat
tggtttaTTTCGGAAcgagtcataatggcagataattttaaaagtttctg
tgTAAATGTGTGCCatttatcaatgttgatggcttgttgattctttaaag
aaaaaagataacaaatatagctttttctaatcctggaatatcgaggttcc
agctacattGATTATTGACCAATTTGCCGTGTACTCTGTAAACCAGACGG
TACTGTGCGAGATTgcataacttgcatcagtggaggctaaggGCCCGTCa
acaaacgattttcttttttttaatggcttTGGCCGTAAGGGGTGGGACCC
TCACtgcaatgccgttaaaaaagttcaaaaaaaaagggaaagtctcactt
acaaatttcatcagttCAAAAAGTAGAAATATGTGAAGAAAGGCTAAGAC
CAAAGTAACCACACGACATTCACCTTATTCCCAGTCACCAATTAATGCTT
CTACgagaaaaatgactgaaaaatatttgaaagttccaatttcagccatt
ttcagccaaatccaactttTTTTCTTGCTGGGGCTTCAAGGAAACTTATC
CTATCCATGTGTAAACATTCCCGTATGTTTCTGATGTACTTGACTATCGG
TTGTCGAACCGGGATAAGACAGGGGTTATGCAAGAAAAACCATCATTTCC
ACCTCAAAAGGTGACTTTCGCTGCCAATTTGATAGAATTGTTCCCCTATA
AATTTCCTCCCTTTCAGTAGGTCTTCCTCTATCTTATATGCttcaaaaaa
gccaaaaatattGCCCTAAAAGCTTAGCCTCACAAAGCTCCAGCTTAAAA
TATAACCCCCTGGTTGAATCTTTGTATTCTTATCCTATGAATATAACAGT
ACAGCTATTCTACGGAAATTGCTGTCATGTGACTTTACTCTACCGTGTGA
TACAAATTGCGCATTTTCATTGGATGTTGGAAATTTATTTGTCACGTGAC
AAGAAGTTCCGACTtcacattaaaataaaataaaatggtgGAAGGACGTT
TTTCCGATGTATATGGATTATTGAAAGAATTCAgttgatttaaaggtttt
aattatttctttttcttttgccatgtgtactaaaagattctacaatgttt
ggggaactcaaaatatccaaaagtttttcaatttttcatggaatatttta
tcaattatcTTGGTTTTTTCAGGGTTTATTCTAGAACTATTTTGGAGTAG
AGAGCTTTTTACAGATCTTAAAAGTGTTTACTCATTCTTTAGATATAGTC
AAAAGTTTAGACATTGGCGAAAACTTATTTCTTTGATTAAACATTGACAC
ACGCTCTTTCAAATCAGACACGCTTGCACCagacctccaaagtcattttt
aATTAACATAACAGCAAATTATACCGATAGATAGCAAATAATGTGATTAC
GCTACTCTCACCAGGTAGGCTTTCACACCTCAAAAGGAACAAATCTTTGC
GACGAGAAACACATAAATGCAATCATGTGCATTCGCACAAGCGTCCAAAC
ACAGATATAAAAAAGTCTGTTCTTCCGAGGAAAGTTGTGAGATCTGTTAT
CGACATTGGTAATTTTGACATGTCGATCAATAGCGCACACTGGAAAAAGC
GCCTCTAGAGAAAAATAAGGAAGACAAATAATGATGTAAGCAGCAAGTGT
GTGATTAAATTGTtcttcaaattatgtacttttaaaatgctttaaaaata
cataTTTGGTTGTGATTATTggatggtgaaagtttgattgataaacttgg
ttgaagtaaagcaaacttgttgtcaaagagGTTTAAACATTAAGTGGAAA
TACAGGTCAGATATTAACAATTCCATGTTttaaccaatcgtcccaagctA
GAGCCGTTAACGGTGCAGTGTCCTTcgtctgaaatattgataaaaaagtc
gATGCAATCAGTTTCGAAATAAGACGTCCAGAGTACAACCaccaaaattg
gaaataagaaaaagaagactcaacattgtgatcaaaacattcaagacgcc
cagaaaaaaaagaagactttacatTACTATCAAAACATTCAAGGGACATG
CCGACAGTCTTCAACTTTTACAGCTCCAATGCAAAGTTTCTAGCTCTGTT
ttgaaataacaaaagaaaccgGTATATTGAATCTCTGGATAgacaaaaaa
tatttgtgtgttttttatcgaatgaagactctccatagaccgccactttc
aaaacaaaacaaatacaaactttagaaaaaaatggcgacttgaagaaaaa
tggggaaaaacaaaagaatgagtGAAAAGAAAGTTCATGagttttttatc
atcctgatcagTTCTTATGACGTAGGctgcaagtagagcactgattttct
cttttaagCGTTCGCCAACTGGACAGGAGACTCTATAGCCACAAGATTCT
TGTTTTTACTTATGTGTTGTGGTGGGACTCAAAGATCAAAACAGGAGTTT
TCATATTTATTTGCGCAGGAAAGAAAGTATGATTTCATAATTACTGTTTT
TAAGatcgtgttttgaaagttttgtgtgtgtactccgtcttgaaattttt
tgatatgggaaaacagaatatgctatgtcttaaGAACAAATTACCTTAAA
GCTTTTGTTGCTttataaatatttctttttggattatgAAATTCCATCCC
TTATTGTTCTAAtgagtaaaatatttctttataagatgcttcgTTGGATT
TACTGtataatctttgtgtaaacttgtaTATGTTTTGCAACCACAGTTTT
tttgttcctgtatttttgaacTTAAACTTGAACTCCAGATGCCATGTTAT
ATTTCTCTGATCCAGTTAGATAGCTATTTTTTTACTTACCCATTCTCCTG
TCCAGTAAGACATAAGAATTTAAATTGCGTGATGGTTCTATTGAAAGTAG
AGTGTAAAATTAGGGGAGACATACTCATTTTGCCTgacatttaaattttt
gaaactttcccCTTCCTTCCACCCATTATTGCCACCTGCGAactttaatc
cccgcaaaagtttatcccgTTAAAGTAACTCTCACCCTTGtcgttgcaaa
tacatcctgtaggtgactgatgttgtttttctgAAACCCTAATTTtccaa
agagaaaaaaaaagagaaccctTTACCTAAAAGATATGggcaaaagaaaa
cttttaattagTGATAATTAGGGTAAATTCTCTTGATCTCTTTTTGCTCT
TTTACCCCATCTCATCCTGAAGAtctcaaatcaaaaaagaaaagaacaag
tTGCTGTTTGTTTGTCAATAATATCCCTTTATTGTCATTTTTGGAacaat
tagaaaaaaatggaaaaatagttGTATTTCTGGTTGCATAAGGTCCAAAT
AGTAAATTTGGAAGGTATTCTTTGTTGAATCTTTTCtgcaaattaaaaga
aattgtaTATTGGCCCAGTTTTGCGAGTTATTTATTTAGCATTAGGTGGA
ATTGAAAATACAGCATTGTATACAAGGTCTAATGCATGTATTCCCCATAT
ATTTCGTCTGAAGGTTTAGAGCCAAGTTGACTGAATATGAAGTCTTTGGT
ATTACCTCAGCAGGAATCGAACCTACTGCCTTGTCCACCGCAGCCAAATG
CTGTAGTTTTGCACTACAAGCAAACCATACCTATGGCTAACTATCCGCTC
AACattcaaatgaaaacattgggctaaaatgaaaatttcaaaatgcttTA
AGATACGAATCCTTGCCTTATTTTAGTTTGCCTTGCATTATGTACTGGTT
TGGTTTATACCACAGCACTATccaaatttttgtcattatTGCACCTTGAT
TGTTTACTTTAGGAACTTTTGCGGATTTTTGGATAGTTTAGCCGTAAGGG
AAGTATTACAGTGCTTTCATAATAAAGTGTTAACTTTCATAGTCTCCAAA
CAGCTGACTCTTCTGGTCTGTAAACTATGAATTATGCTAGCTTGCTTGAT
TGGAATGCAAAAAAAGTCAGGCTGCAGCTCTTGTTGTTATCCCCAGCAGA
GCAAACAGGGTCTTTGAAAATTTGTGAGATGACACAGTCCACTGAAACTG
GGAAGTATGGTGTTTTATGCTGTATTAATCGATAAACTTTCTTGATTGAC
TaactaaacaaaaattgatGGTAGCATACTAGGACCTTGCTGTATATCTT
AGTTGATTGGATTGCCCCAAATCTGTATCGTCCCGACCTGCATAAATATG
CTCTTTTTTGTGGCCTTCCAGACCAGTTGATCCATAAAGTAATAAAGCTT
TGATCAGATCCAGCATTCCCTTCTCTTGAACGTCCCTCTCTAAAGGAAAA
GTTTTTCAGTAAAGGCTCCTTCGAGTAAACGGGGGTGTTTAAATTTGAAA
CATACATGTAGCTGTAAAAGGTAGAGAGTAATATGGAGAAAAATGTNCCT
CCCCTCTAGGAGGGGTGTTTAAATTTGAAACATACATGTAGCTGTAAAAG
GTAGAGTAATATGGAGAAAAATGttaaagatagtatttttttcagttatc
aatCAAACTAATTGTGACCCATTTTTACATTtacaaaatgaaatatttga
acTGAAATAAAACGAAAACGCAAAGCAAGGTTCCCATTCACTTTATCAAA
GTGACCGTGGCTAAATAATATTTGATCAatgcccccttcttttaaacgtt
GGACCCCATTATAGACAGGGGGGACAACGTGATGAATTTTTGCCAAGCCT
CTTTATGCTTCATGCTATTTTACAACAAGTTTTTTGTGAGATTTTCTCTT
AATGAGTTTATAGACATAGAGAAAGTTTTATCAAAAAGGAAAGTAAttac
tttgtttttaaaaatgtctaaaagtaataattttttgttattttggaaac
ttttgattttttgaagatttgtaaaaaatgaggCCCAGCATATGTCTTTT
TACGCAATGCTTTAAAAGTTTTACCAAagttaaaatatttgtttatccTT
CCCAAATACATCAAGatgtttattatttatttatcatttgATAAACTACT
TTTGTGCTCTTCGTATACGAATATATGAATTTGCAGCAGGTGTCTAATAA
TAACCGGCTCCCCTTTTTATGTTGATTAATTCCTTCTTTTTATCTCTATT
ATTTATCGTATCGTTTATTCAAAAGCTGAGCTCGATAAATCgccatatat
ttttgaaaagtgtaGTTAGTTTTTTGATGAGCTATAATCCATAATATTGT
GTTGTTGTAGAGAAAACAAGACAAGCAGTTCTCTAAGAGGTGAATAGGAT
TGTTTTGTATACCATGGTGCTCCTCAGAAAGCTTTTTTATGTTTGCACCA
TGGGTTATTTTTATGTCGTTAGAATGAGTGATTGAGAAAAGTTTAATAAT
ACTCGTTAGCCACTCTGTTTGCTGTATAAAAGTTGTACGAGATTATTTGA
TATAACTGATTGCAGAAAGCTCTTTTGCTGACAAGAATCGCGACAAGTTT
TGAtagattttctctttttctgaTGAGTTTGTAGCTTGTGATGGAGAAAG
TTTTATCAAAGAAAAGTAATTACTTTGTATTGAATAATGACGAGGTAAGC
GGCTTATATCTTTTGTTATTGCAATCAGAATTTCCAGTGCACAAGTTACA
AAAGTTTAGCTCACTGACTTATTATCAGATCTCAACCGACCCGTACTTTC
TCTGATCATGGCgcttgaaattttgtttgaaatccTCTTAGTTTCacaaa
catctttttaaagaaaaatatgtaaTGACGAATTCCTGCGTGAACAGTTT
ACTTTCTGATTGCTTGCTCTGATAATTTCTCTTTCTGATGAAGGGAAATA
TCAACCCATGTGGACGTTGAACTTATTTGATTTCTGATACGTggtgtttt
tgttttgacaGGTTGGTGGTCATCCAATCATTNTGAAATATCAACCCATG
TGAACGTTGAacttatttgatttttgatacgtggtgtttttgttttgaca
GGTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaagaagaaat
tgtTGGCTAGCCCTGATGATGACTTGGTGAGTAAACTTCATGTTCGTGTT
CGTAGCAGTTCGTGGTCATTGCTGAATACGAATTTCATCAATTTGTATCA
TAAGTCACAGATAAATTCTCAGAACTAGTTTTCCCTCATTTTTAAAAGTG
ACTTCCCTTTTATGGTCATTAAAAGAGGCTAGAGGATGCATTGTACAAAT
CTTATGCGAGTTATGCGAGTTGTAGTCGTGGCGTTCTAAGTCATAGATTT
AGAACGCTATGGTTgtagtttttattttaaaacctgAATAAAACCTTGCT
TGTCATCCTTTCTTCGTCAGGGTTACAAGAACAAAGGGATCATATCCAAC
GATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATTAAAGAGCAAGG
TGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCAACGAAGTTTGA
ACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAGATATTCAAATA
CTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGATGAGCAAATTGA
TAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCAAGCTTCCTTGA
TTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATAAAATGGACTCC
AAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCTATCGTCAAACA
TAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAATAATTCTGAGG
ACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTATCGAGAACCATC
GGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCCTTCACCAAAAA
GCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAGTAGATCAGAAC
CTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGTGGGCTTACTTA
AATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTGTATGTCCGAAT
TATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCATCAAACCGTGTT
ATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATAAGCGATTAGAT
CTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGTATTTCGCGACC
TCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGATTTTATTGTTC
ACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATTCTTTGTTCATC
AAATGTATCGTTGAAATTTAATTGCTGCTGGTCTGATTCTCATAATTTTT
TAGACATGAAACTCTGCTATTTGTTGTCGATGGGATTCATAGAATTCTAC
ATCGATGTATTTTATACTCATAATTTATTATTCtccattttcaaaatgat
cttGATACGATTGTGCTAATTTTTCGAGAGGTATTTTTTAGAAAGAATGT
TTTAATTAAAATGTATCAATACATTTTCACTATCCTACTCTGTATACAGC
TACCACAAAAAAATCCCGTCTTAGAATTCCCCAACCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014472TCONS_00014472Clytia hemisphaericatranscript
TCONS_00014473TCONS_00014473Clytia hemisphaericatranscript
TCONS_00014474TCONS_00014474Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014474-proteinTCONS_00014474-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:28221..37008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.56	26.97	20.82	22.1	156.1	111.62	69.31	71.35	55.81	58.15	41.75	42.74	22.21	20.94	20.4	22.81	35.88	30.94	22.86	19.73	38.78	34.17	56.47	50.93	29.84	32.07	39.63	33.94	37.11	41.35