TCONS_00014473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014473
Unique NameTCONS_00014473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014473 ID=TCONS_00014473|Name=TCONS_00014473|organism=Clytia hemisphaerica|type=transcript|length=1349bp
ATAATCCATAATATTGTGTTGTTGTAGAGAAAACAAGACAAGCAGTTCTC
TAAGAGGTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaagaa
gaaattgtTGGCTAGCCCTGATGATGACTTGGGTTACAAGAACAAAGGGA
TCATATCCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATT
AAAGAGCAAGGTGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCA
ACGAAGTTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAG
ATATTCAAATACTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGAT
GAGCAAATTGATAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCA
AGCTTCCTTGATTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATA
AAATGGACTCCAAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCT
ATCGTCAAACATAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAA
TAATTCTGAGGACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTAT
CGAGAACCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCC
TTCACCAAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAG
TAGATCAGAACCTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGT
GGGCTTACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTG
TATGTCCGAATTATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCAT
CAAACCGTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATA
AGCGATTAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGT
ATTTCGCGACCTCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGA
TTTTATTGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATT
CTTTGTTCATCAAATGTATCGTTGAAATTTAATTGCTGCTGGTCTGATTC
TCATAATTTTTTAGACATGAAACTCTGCTATTTGTTGTCGATGGGATTCA
TAGAATTCTACATCGATGTATTTTATACTCATAATTTATTATTCtccatt
ttcaaaatgatcttGATACGATTGTGCTAATTTTTCGAGAGGTATTTTTT
AGAAAGAATGTTTTAATTAAAATGTATCAATACATTTTCACTATCCTACT
CTGTATACAGCTACCACAAAAAAATCCCGTCTTAGAATTCCCCAACCCG
Run BLAST on NCBI

transcript from alignment at sc0000188:34654..37008+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014473 ID=TCONS_00014473|Name=TCONS_00014473|organism=Clytia hemisphaerica|type=transcript|length=2355bp|location=Sequence derived from alignment at sc0000188:34654..37008+ (Clytia hemisphaerica)
ATAATCCATAATATTGTGTTGTTGTAGAGAAAACAAGACAAGCAGTTCTC
TAAGAGGTGAATAGGATTGTTTTGTATACCATGGTGCTCCTCAGAAAGCT
TTTTTATGTTTGCACCATGGGTTATTTTTATGTCGTTAGAATGAGTGATT
GAGAAAAGTTTAATAATACTCGTTAGCCACTCTGTTTGCTGTATAAAAGT
TGTACGAGATTATTTGATATAACTGATTGCAGAAAGCTCTTTTGCTGACA
AGAATCGCGACAAGTTTTGAtagattttctctttttctgaTGAGTTTGTA
GCTTGTGATGGAGAAAGTTTTATCAAAGAAAAGTAATTACTTTGTATTGA
ATAATGACGAGGTAAGCGGCTTATATCTTTTGTTATTGCAATCAGAATTT
CCAGTGCACAAGTTACAAAAGTTTAGCTCACTGACTTATTATCAGATCTC
AACCGACCCGTACTTTCTCTGATCATGGCgcttgaaattttgtttgaaat
ccTCTTAGTTTCacaaacatctttttaaagaaaaatatgtaaTGACGAAT
TCCTGCGTGAACAGTTTACTTTCTGATTGCTTGCTCTGATAATTTCTCTT
TCTGATGAAGGGAAATATCAACCCATGTGGACGTTGAACTTATTTGATTT
CTGATACGTggtgtttttgttttgacaGGTTGGTGGTCATCCAATCATTN
TGAAATATCAACCCATGTGAACGTTGAacttatttgatttttgatacgtg
gtgtttttgttttgacaGGTTGGTGGTCATCCAATCATTCGTGAGATGGC
agatgaaaagaagaaattgtTGGCTAGCCCTGATGATGACTTGGTGAGTA
AACTTCATGTTCGTGTTCGTAGCAGTTCGTGGTCATTGCTGAATACGAAT
TTCATCAATTTGTATCATAAGTCACAGATAAATTCTCAGAACTAGTTTTC
CCTCATTTTTAAAAGTGACTTCCCTTTTATGGTCATTAAAAGAGGCTAGA
GGATGCATTGTACAAATCTTATGCGAGTTATGCGAGTTGTAGTCGTGGCG
TTCTAAGTCATAGATTTAGAACGCTATGGTTgtagtttttattttaaaac
ctgAATAAAACCTTGCTTGTCATCCTTTCTTCGTCAGGGTTACAAGAACA
AAGGGATCATATCCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGAAG
ATCATTAAAGAGCAAGGTGACCTCCTCAAGACCATGCAAAATGATATGGA
CGAGCAACGAAGTTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCTGA
CGCGAGATATTCAAATACTCAACGATTCACATTCCAAAGAAACGATCAAG
AAAGATGAGCAAATTGATAAATTGAAAAACACTCTGGAAGCTAAGACGGA
ATTCCAAGCTTCCTTGATTGATGAGTTGCGATATCAAATACAAAGCATGA
GAAATAAAATGGACTCCAAACGGCTTACTGAGAATGGTACATCTTCAGGG
AAAGCTATCGTCAAACATAACGAAATTCTTTCACCGACTAAGAAGTTATT
GAGGAATAATTCTGAGGACAGTATCTCGAGTAATGGATCAAATCCGTGTC
TTCTATCGAGAACCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAATA
AATGCCTTCACCAAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGATGA
CCCAAGTAGATCAGAACCTTTTGTAACTGGTCCAAATGGATATCGTTTGT
CCATGTGGGCTTACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTCTT
GCGGTGTATGTCCGAATTATGGCTGGTGAATATGACCCTGTGCTACCGTG
GCCCATCAAACCGTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGATC
CCAATAAGCGATTAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAACAC
AGCGGTATTTCGCGACCTCAGAAAGACGATAAATCCATTATTGTTGGGTT
CGATGATTTTATTGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGCGG
ACGATTCTTTGTTCATCAAATGTATCGTTGAAATTTAATTGCTGCTGGTC
TGATTCTCATAATTTTTTAGACATGAAACTCTGCTATTTGTTGTCGATGG
GATTCATAGAATTCTACATCGATGTATTTTATACTCATAATTTATTATTC
tccattttcaaaatgatcttGATACGATTGTGCTAATTTTTCGAGAGGTA
TTTTTTAGAAAGAATGTTTTAATTAAAATGTATCAATACATTTTCACTAT
CCTACTCTGTATACAGCTACCACAAAAAAATCCCGTCTTAGAATTCCCCA
ACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008098XLOC_008098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014473-exon-sc0000188-1491911889:34654..34709TCONS_00014473-exon-sc0000188-1491911889:34654..34709Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1510915933:34654..34709TCONS_00014473-exon-sc0000188-1510915933:34654..34709Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1575043694:34654..34709TCONS_00014473-exon-sc0000188-1575043694:34654..34709Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1491911889:35422..35496TCONS_00014473-exon-sc0000188-1491911889:35422..35496Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1510915933:35422..35496TCONS_00014473-exon-sc0000188-1510915933:35422..35496Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1575043694:35422..35496TCONS_00014473-exon-sc0000188-1575043694:35422..35496Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1491911889:35791..37008TCONS_00014473-exon-sc0000188-1491911889:35791..37008Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1510915933:35791..37008TCONS_00014473-exon-sc0000188-1510915933:35791..37008Clytia hemisphaericaexon
TCONS_00014473-exon-sc0000188-1575043694:35791..37008TCONS_00014473-exon-sc0000188-1575043694:35791..37008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:34654..37008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.9388	10.7806	14.568	18.0656	102.708	50.1789	44.2037	32.5428	48.7218	51.1646	37.1785	34.3128	16.9265	13.3426	17.2735	20.0672	28.5713	25.94	17.2891	12.3463	30.3333	22.1964	45.3494	37.9854	17.4952	17.271	30.7172	7.44718	25.8253	25.0404
Blast
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BLAST of TCONS_00014473 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.086e-16
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 3 
Query:  633 VWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMWAYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNKRLDLVRVRDLS-----------VKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDSLFIKCIVEI 1079
            +W+I ++ ++L+  ++    +   S  F T   GY+L + A+LNG G G    L++Y+R++ G +D +L WP     TF L+ Q+ DP     L + + ++            +  G  R   D+ S+  G+  FI H+D+ K+ Y+ DD++FI+  VE+
Sbjct:  311 IWKIGSYGRRLQEAKAKPNLE-CFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQS-DPG----LAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVEL 464
The following BLAST results are available for this feature:
BLAST of TCONS_00014473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.086e-1629.38TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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