XLOC_008271 (gene) - C. hemisphaerica

Overview
NameXLOC_008271
Unique NameXLOC_008271
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000198:330953..334561+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008271 ID=XLOC_008271|Name=XLOC_008271|organism=Clytia hemisphaerica|type=gene|length=3609bp|location=Sequence derived from alignment at sc0000198:330953..334561+ (Clytia hemisphaerica)
AAATTTAATAGTGCCCATAGTAAAAATCATATAATTATGCTCAAAAAGAG
CATAAAGATTTCGTTTCCAGTCTCCTTAATTGAATTTCGTTACAAAGATA
GCGTGGTTCAAACTCTTGCCGACGCACATTTTGAgcatttgatgaaaatt
tgattAATCGATGCGAATAAATCAAGCTGCTGTCAAGAGGCAAGGTTCAA
CTCTTCTAAATCTAAATTTTCTGGAGTTTTTATATGGCGTTGACTATGTT
ACAAGTTTGAAATTGATgcttactttttttaaagtaaagatTAAGAGATT
TTTGTAGATTATTTTTGTCAAGTTGATTGGGATCAAGGTAAGTCACTTTT
CTagaaacatgctcatttttttaCTGCCTTAACAGTTATCCAGGTCGTAT
TAAAAGCCAAGTGCTGTATAACTTCACTATATGAAGTAATCGAGGTTATA
CTTCCCACTCACATGAATCTTATGGTGTGTTCTGAAACCTGGATCGTATC
TAGTTTCTCTCTTGTTTACATGTACAGTACGATCTTCAGGTTCGGCTGGT
CGTATACTTCAACTGACCGTTTACCACGGatctctaaattgaaatatgtC
GAAATAAAACCTACCAACAAATTTACCTGATTTCTCGaataaatttgcga
aaaaaagaaattcgacCATTCTGAGCTAAAATTTCTTGCAAGGGTTTGCT
GGACCGTACTGGAATTTCGATTCGTCTTAAACCAAAGCTTTGAGCGTCCT
GAAATCTTCGACTGAAAATTCGCAGTAGAACAGCAGACCTCAGTACACCC
TTTACATACTGAAAGGATTAATGTATCAAATTAGGTTTTTTTTCATCAGG
GTGTGCCGAGACCAGAAAAATAAACCTGAATGCATTTATATCCTTTAGAT
AGCCATGCGGGAGAGATGGTTGCTAACGCTGTTTATAATCGTTACGTTTG
TGACAGGTAAAtcacttcaaattttcatttctcatTTAATTATATAGCTG
AATGCATTTAGCTTGGAGAAGAAGGTTGATTAATCCGTAACAACCCTGAT
TTTTGTTATCACCCTTATACAAACGATGATTTTTGCTGGCCGAAAAAATA
TCATTTGACTTTTTAGACCAATTAATTTCATGAGAATAGTAATTCTTGAT
TAACTGTTGATCGAACGTTTAAGTTtcggtaattttcaaaaaagttaaaa
aaaaaatctatggATGGAAATGAGAAATATTCTCTTCTAAGGCCATAAAA
ATTAAGGAGGAAGTTTAGGCACTTTTGAAACGTCAGTGTAACTCGTGCAG
CTAAACATTAGTCTCTAATCTGTTTCGTTTTAGGATCGCAAGAagagaac
aagaagaaaaagagTGGTCTTCAAATCGAAAGTATCGAATACAAAACACT
CATACCAAAAGATTCCAACGCTGGTTTTTCTCAGGATGATGACATTATGA
CGGGAGCGTCGACCGCTTCTATATCACCTTCAAAACCTACGGTAAGCGTC
AACGTAGAGGATGACGCCGTCGATTTGATGTCCCCACGTTCGAAACGGGA
AGCCGATTACCCATCCTTTGACGATATCTATTCTTATATACATCATCCAT
CTAATGAACTTTTTGATGAACTAACAGCTACAGCAACTGTCACTGGCCCC
GTAAGTGACGGCGGTGATGACGGGGCTCCAAGCCCGCATGCCGGTGCCGG
TATGAAAGGAATCATGAATGAATTGAAAGCTTCTAAACACCACAAGTTAA
CGAGAAACGATATCCGGCAACTCGCAAAGAAGGCAGTCATTCTTGCTACA
CTGAAGAAATTAAAGGACTCAAAAACAGGAACAGCTAAATCTTCCACACC
TGCAAAACCTTCTCCCATAACGACTCCAAAATCAAGTAAAAAGCATAAGA
AGGGAAAGAAATCGAAGAAAAAGCATCACTCTGAGAAACACACTCACATC
TCAGAAAGCACAACACCTTCGATCACTTCTACAACATCATCCAAGGATAA
CGAAATGTCTGAAGATCTCTCCAAAGCATCCACCAATCACCAAGATGCTT
TGAATGATGATTCTTCAGCTACATCAAGTCCAGTTAATGCGGATCTCCTG
CCAAACAATGATGCAGTTGATATATCCAAGAAATCAAACATCGGGAAGAT
TGATGACAGTGTTGCCAACATGTTTGAGGACGCTGACTCCACCAAAACGC
CTACCGAAAAATCAACATCCACAGGAAGAACACAATTAACagaaaaagta
aaatctttACGTTCTTTCTTAGTGAAGGCAGATCCTGCAGTTATCCCATT
GAAGTTCTTACCAGATTTACCATCAGGTTTGCGTATGATTGGCTGGAAAG
AAATGATCGATAAGAAAAAGAAGCAGCTGAATGAGCTGGAAGCGACCGTC
GGTGCAGTTGACGATGCAACTGAAACGAAACCAGTTAGTCTTAACATCGA
CGTTGAAGATCAGACCCCAAGCAAGACAACTGCTGCAGCTGCCGAAGAAA
GTGATTTAACAGAGCTGACAGGTGATAAGAAATCGTCAGACCCGATCTCA
CTACAACACATTGGATACTTACAGCGACATATCAAGGGCGCACGATCTCT
ACGTAAATTGATCGCTAAAACATTGGTTGGACACTGCAAATCAACTGGTA
AACGTATATTTGATGCTTTTGTTGCAATGGACAAAGCATTGGCGAGAGCA
CAAACTATAGCAACGGTCATTGGCAAGAAATTTAATATTGATATCGATCG
TATTGACGCGCTAGTTGGTGATAAAGAGGATCAGGTGGTCGAAACATTCT
TAAAAgacattttcaccaaaatataaatttattcTTAACGTTGTTTCAAA
AGTTTATGGATAGACTGTCGCATTCATAGACAATTCAAGTAATTAAACAT
TTGCTTATGATGCTTCAATTAACACTCGCCTTACACTCATTACGTTCACA
TGGCTAATTTCAAACTAATCTAACGCATTCTTATTGTTATCCTCGTTTTG
ACCTGCCCCGATTTCTAAGTACGAAAAGTGAGGGAAAGTGAAATAAAGCT
TAAGTATTTTGTCAAGAATACAAAACAGCAACTCTGGAGTGAAAATTGGC
TCTTCCAGGAAAAATCCGTTCATTGGGGGTGTAGGATATATtataatttc
aatgaattacccctggacattttcatttttcaccccatggacatggGTTA
TACCCATGGACAATCATCAACTTAACCCCTGGACACCAAAATTTGTCCCT
GAACATcgcaaatttaccccctgggCATTGCAATTTTTAGGACTGAGCTT
TAGGACTGAACGGATttcttctggaaaagcccaatactaAATTAAAAGAG
ATCGTTTCAAGCCAAAACATGAGATTataaattcttaaattttctcCTTC
GATGAAAACCTTGATTGCACCTTCTGAGAAACTTTTACTTAACTTCACAC
AGTGGCGTTTCCACCGGGGAAATAAAAAGTGTTAGTTGAAAAAACCATGA
AAATAGTAGATATTGTATATATAATTTTGGATGATGTCataacatttaat
atttattacTTTTGTCTCTTGTATTCTTTTCTTTCCTGAGCTTATAGCCT
ATATCAGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014778TCONS_00014778Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014778-proteinTCONS_00014778-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:330953..334561 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12	0.17	0.16	0.18	0.19	0.23	4.32	5.74	4.94	3.62	3.37	2.44	10.55	9.74	5.49	13.51	10.23	9.38	0.18	0.11	6.21	6.79	4.38	2.87	5.97	8.66	1.05	0.46	0.3	0.39