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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014778 ID=TCONS_00014778|Name=TCONS_00014778|organism=Clytia hemisphaerica|type=transcript|length=2671bp
AAATTTAATAGTGCCCATAGTAAAAATCATATAATTATGCTCAAAAAGAG
CATAAAGATTTCGTTTCCAGTCTCCTTAATTGAATTTCGTTACAAAGATA
GCGTGGTTCAAACTCTTGCCGACGCACATTTTGAgcatttgatgaaaatt
tgattAATCGATGCGAATAAATCAAGCTGCTGTCAAGAGGCAAGGTTCAA
CTCTTCTAAATCTAAATTTTCTGGAGTTTTTATATGGCGTTGACTATGTT
ACAAGTTTGAAATTGATgcttactttttttaaagtaaagatTAAGAGATT
TTTGTAGATTATTTTTGTCAAGTTGATTGGGATCAAGATAGCCATGCGGG
AGAGATGGTTGCTAACGCTGTTTATAATCGTTACGTTTGTGACAGGATCG
CAAGAagagaacaagaagaaaaagagTGGTCTTCAAATCGAAAGTATCGA
ATACAAAACACTCATACCAAAAGATTCCAACGCTGGTTTTTCTCAGGATG
ATGACATTATGACGGGAGCGTCGACCGCTTCTATATCACCTTCAAAACCT
ACGGTAAGCGTCAACGTAGAGGATGACGCCGTCGATTTGATGTCCCCACG
TTCGAAACGGGAAGCCGATTACCCATCCTTTGACGATATCTATTCTTATA
TACATCATCCATCTAATGAACTTTTTGATGAACTAACAGCTACAGCAACT
GTCACTGGCCCCGTAAGTGACGGCGGTGATGACGGGGCTCCAAGCCCGCA
TGCCGGTGCCGGTATGAAAGGAATCATGAATGAATTGAAAGCTTCTAAAC
ACCACAAGTTAACGAGAAACGATATCCGGCAACTCGCAAAGAAGGCAGTC
ATTCTTGCTACACTGAAGAAATTAAAGGACTCAAAAACAGGAACAGCTAA
ATCTTCCACACCTGCAAAACCTTCTCCCATAACGACTCCAAAATCAAGTA
AAAAGCATAAGAAGGGAAAGAAATCGAAGAAAAAGCATCACTCTGAGAAA
CACACTCACATCTCAGAAAGCACAACACCTTCGATCACTTCTACAACATC
ATCCAAGGATAACGAAATGTCTGAAGATCTCTCCAAAGCATCCACCAATC
ACCAAGATGCTTTGAATGATGATTCTTCAGCTACATCAAGTCCAGTTAAT
GCGGATCTCCTGCCAAACAATGATGCAGTTGATATATCCAAGAAATCAAA
CATCGGGAAGATTGATGACAGTGTTGCCAACATGTTTGAGGACGCTGACT
CCACCAAAACGCCTACCGAAAAATCAACATCCACAGGAAGAACACAATTA
ACagaaaaagtaaaatctttACGTTCTTTCTTAGTGAAGGCAGATCCTGC
AGTTATCCCATTGAAGTTCTTACCAGATTTACCATCAGGTTTGCGTATGA
TTGGCTGGAAAGAAATGATCGATAAGAAAAAGAAGCAGCTGAATGAGCTG
GAAGCGACCGTCGGTGCAGTTGACGATGCAACTGAAACGAAACCAGTTAG
TCTTAACATCGACGTTGAAGATCAGACCCCAAGCAAGACAACTGCTGCAG
CTGCCGAAGAAAGTGATTTAACAGAGCTGACAGGTGATAAGAAATCGTCA
GACCCGATCTCACTACAACACATTGGATACTTACAGCGACATATCAAGGG
CGCACGATCTCTACGTAAATTGATCGCTAAAACATTGGTTGGACACTGCA
AATCAACTGGTAAACGTATATTTGATGCTTTTGTTGCAATGGACAAAGCA
TTGGCGAGAGCACAAACTATAGCAACGGTCATTGGCAAGAAATTTAATAT
TGATATCGATCGTATTGACGCGCTAGTTGGTGATAAAGAGGATCAGGTGG
TCGAAACATTCTTAAAAgacattttcaccaaaatataaatttattcTTAA
CGTTGTTTCAAAAGTTTATGGATAGACTGTCGCATTCATAGACAATTCAA
GTAATTAAACATTTGCTTATGATGCTTCAATTAACACTCGCCTTACACTC
ATTACGTTCACATGGCTAATTTCAAACTAATCTAACGCATTCTTATTGTT
ATCCTCGTTTTGACCTGCCCCGATTTCTAAGTACGAAAAGTGAGGGAAAG
TGAAATAAAGCTTAAGTATTTTGTCAAGAATACAAAACAGCAACTCTGGA
GTGAAAATTGGCTCTTCCAGGAAAAATCCGTTCATTGGGGGTGTAGGATA
TATtataatttcaatgaattacccctggacattttcatttttcaccccat
ggacatggGTTATACCCATGGACAATCATCAACTTAACCCCTGGACACCA
AAATTTGTCCCTGAACATcgcaaatttaccccctgggCATTGCAATTTTT
AGGACTGAGCTTTAGGACTGAACGGATttcttctggaaaagcccaatact
aAATTAAAAGAGATCGTTTCAAGCCAAAACATGAGATTataaattcttaa
attttctcCTTCGATGAAAACCTTGATTGCACCTTCTGAGAAACTTTTAC
TTAACTTCACACAGTGGCGTTTCCACCGGGGAAATAAAAAGTGTTAGTTG
AAAAAACCATGAAAATAGTAGATATTGTATATATAATTTTGGATGATGTC
ataacatttaatatttattacTTTTGTCTCTTGTATTCTTTTCTTTCCTG
AGCTTATAGCCTATATCAGAC Run BLAST on NCBI protein sequence of TCONS_00014778-protein >TCONS_00014778-protein ID=TCONS_00014778-protein|Name=TCONS_00014778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MRERWLLTLFIIVTFVTGSQEENKKKKSGLQIESIEYKTLIPKDSNAGFS
QDDDIMTGASTASISPSKPTVSVNVEDDAVDLMSPRSKREADYPSFDDIY
SYIHHPSNELFDELTATATVTGPVSDGGDDGAPSPHAGAGMKGIMNELKA
SKHHKLTRNDIRQLAKKAVILATLKKLKDSKTGTAKSSTPAKPSPITTPK
SSKKHKKGKKSKKKHHSEKHTHISESTTPSITSTTSSKDNEMSEDLSKAS
TNHQDALNDDSSATSSPVNADLLPNNDAVDISKKSNIGKIDDSVANMFED
ADSTKTPTEKSTSTGRTQLTEKVKSLRSFLVKADPAVIPLKFLPDLPSGL
RMIGWKEMIDKKKKQLNELEATVGAVDDATETKPVSLNIDVEDQTPSKTT
AAAAEESDLTELTGDKKSSDPISLQHIGYLQRHIKGARSLRKLIAKTLVG
HCKSTGKRIFDAFVAMDKALARAQTIATVIGKKFNIDIDRIDALVGDKED
QVVETFLKDIFTKI Run BLAST on NCBI transcript from alignment at sc0000198:330953..334561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014778 ID=TCONS_00014778|Name=TCONS_00014778|organism=Clytia hemisphaerica|type=transcript|length=3609bp|location=Sequence derived from alignment at sc0000198:330953..334561+ (Clytia hemisphaerica)
AAATTTAATAGTGCCCATAGTAAAAATCATATAATTATGCTCAAAAAGAG
CATAAAGATTTCGTTTCCAGTCTCCTTAATTGAATTTCGTTACAAAGATA
GCGTGGTTCAAACTCTTGCCGACGCACATTTTGAgcatttgatgaaaatt
tgattAATCGATGCGAATAAATCAAGCTGCTGTCAAGAGGCAAGGTTCAA
CTCTTCTAAATCTAAATTTTCTGGAGTTTTTATATGGCGTTGACTATGTT
ACAAGTTTGAAATTGATgcttactttttttaaagtaaagatTAAGAGATT
TTTGTAGATTATTTTTGTCAAGTTGATTGGGATCAAGGTAAGTCACTTTT
CTagaaacatgctcatttttttaCTGCCTTAACAGTTATCCAGGTCGTAT
TAAAAGCCAAGTGCTGTATAACTTCACTATATGAAGTAATCGAGGTTATA
CTTCCCACTCACATGAATCTTATGGTGTGTTCTGAAACCTGGATCGTATC
TAGTTTCTCTCTTGTTTACATGTACAGTACGATCTTCAGGTTCGGCTGGT
CGTATACTTCAACTGACCGTTTACCACGGatctctaaattgaaatatgtC
GAAATAAAACCTACCAACAAATTTACCTGATTTCTCGaataaatttgcga
aaaaaagaaattcgacCATTCTGAGCTAAAATTTCTTGCAAGGGTTTGCT
GGACCGTACTGGAATTTCGATTCGTCTTAAACCAAAGCTTTGAGCGTCCT
GAAATCTTCGACTGAAAATTCGCAGTAGAACAGCAGACCTCAGTACACCC
TTTACATACTGAAAGGATTAATGTATCAAATTAGGTTTTTTTTCATCAGG
GTGTGCCGAGACCAGAAAAATAAACCTGAATGCATTTATATCCTTTAGAT
AGCCATGCGGGAGAGATGGTTGCTAACGCTGTTTATAATCGTTACGTTTG
TGACAGGTAAAtcacttcaaattttcatttctcatTTAATTATATAGCTG
AATGCATTTAGCTTGGAGAAGAAGGTTGATTAATCCGTAACAACCCTGAT
TTTTGTTATCACCCTTATACAAACGATGATTTTTGCTGGCCGAAAAAATA
TCATTTGACTTTTTAGACCAATTAATTTCATGAGAATAGTAATTCTTGAT
TAACTGTTGATCGAACGTTTAAGTTtcggtaattttcaaaaaagttaaaa
aaaaaatctatggATGGAAATGAGAAATATTCTCTTCTAAGGCCATAAAA
ATTAAGGAGGAAGTTTAGGCACTTTTGAAACGTCAGTGTAACTCGTGCAG
CTAAACATTAGTCTCTAATCTGTTTCGTTTTAGGATCGCAAGAagagaac
aagaagaaaaagagTGGTCTTCAAATCGAAAGTATCGAATACAAAACACT
CATACCAAAAGATTCCAACGCTGGTTTTTCTCAGGATGATGACATTATGA
CGGGAGCGTCGACCGCTTCTATATCACCTTCAAAACCTACGGTAAGCGTC
AACGTAGAGGATGACGCCGTCGATTTGATGTCCCCACGTTCGAAACGGGA
AGCCGATTACCCATCCTTTGACGATATCTATTCTTATATACATCATCCAT
CTAATGAACTTTTTGATGAACTAACAGCTACAGCAACTGTCACTGGCCCC
GTAAGTGACGGCGGTGATGACGGGGCTCCAAGCCCGCATGCCGGTGCCGG
TATGAAAGGAATCATGAATGAATTGAAAGCTTCTAAACACCACAAGTTAA
CGAGAAACGATATCCGGCAACTCGCAAAGAAGGCAGTCATTCTTGCTACA
CTGAAGAAATTAAAGGACTCAAAAACAGGAACAGCTAAATCTTCCACACC
TGCAAAACCTTCTCCCATAACGACTCCAAAATCAAGTAAAAAGCATAAGA
AGGGAAAGAAATCGAAGAAAAAGCATCACTCTGAGAAACACACTCACATC
TCAGAAAGCACAACACCTTCGATCACTTCTACAACATCATCCAAGGATAA
CGAAATGTCTGAAGATCTCTCCAAAGCATCCACCAATCACCAAGATGCTT
TGAATGATGATTCTTCAGCTACATCAAGTCCAGTTAATGCGGATCTCCTG
CCAAACAATGATGCAGTTGATATATCCAAGAAATCAAACATCGGGAAGAT
TGATGACAGTGTTGCCAACATGTTTGAGGACGCTGACTCCACCAAAACGC
CTACCGAAAAATCAACATCCACAGGAAGAACACAATTAACagaaaaagta
aaatctttACGTTCTTTCTTAGTGAAGGCAGATCCTGCAGTTATCCCATT
GAAGTTCTTACCAGATTTACCATCAGGTTTGCGTATGATTGGCTGGAAAG
AAATGATCGATAAGAAAAAGAAGCAGCTGAATGAGCTGGAAGCGACCGTC
GGTGCAGTTGACGATGCAACTGAAACGAAACCAGTTAGTCTTAACATCGA
CGTTGAAGATCAGACCCCAAGCAAGACAACTGCTGCAGCTGCCGAAGAAA
GTGATTTAACAGAGCTGACAGGTGATAAGAAATCGTCAGACCCGATCTCA
CTACAACACATTGGATACTTACAGCGACATATCAAGGGCGCACGATCTCT
ACGTAAATTGATCGCTAAAACATTGGTTGGACACTGCAAATCAACTGGTA
AACGTATATTTGATGCTTTTGTTGCAATGGACAAAGCATTGGCGAGAGCA
CAAACTATAGCAACGGTCATTGGCAAGAAATTTAATATTGATATCGATCG
TATTGACGCGCTAGTTGGTGATAAAGAGGATCAGGTGGTCGAAACATTCT
TAAAAgacattttcaccaaaatataaatttattcTTAACGTTGTTTCAAA
AGTTTATGGATAGACTGTCGCATTCATAGACAATTCAAGTAATTAAACAT
TTGCTTATGATGCTTCAATTAACACTCGCCTTACACTCATTACGTTCACA
TGGCTAATTTCAAACTAATCTAACGCATTCTTATTGTTATCCTCGTTTTG
ACCTGCCCCGATTTCTAAGTACGAAAAGTGAGGGAAAGTGAAATAAAGCT
TAAGTATTTTGTCAAGAATACAAAACAGCAACTCTGGAGTGAAAATTGGC
TCTTCCAGGAAAAATCCGTTCATTGGGGGTGTAGGATATATtataatttc
aatgaattacccctggacattttcatttttcaccccatggacatggGTTA
TACCCATGGACAATCATCAACTTAACCCCTGGACACCAAAATTTGTCCCT
GAACATcgcaaatttaccccctgggCATTGCAATTTTTAGGACTGAGCTT
TAGGACTGAACGGATttcttctggaaaagcccaatactaAATTAAAAGAG
ATCGTTTCAAGCCAAAACATGAGATTataaattcttaaattttctcCTTC
GATGAAAACCTTGATTGCACCTTCTGAGAAACTTTTACTTAACTTCACAC
AGTGGCGTTTCCACCGGGGAAATAAAAAGTGTTAGTTGAAAAAACCATGA
AAATAGTAGATATTGTATATATAATTTTGGATGATGTCataacatttaat
atttattacTTTTGTCTCTTGTATTCTTTTCTTTCCTGAGCTTATAGCCT
ATATCAGAC Coding sequence (CDS) from alignment at sc0000198:330953..334561+ >TCONS_00014778 ID=TCONS_00014778|Name=TCONS_00014778|organism=Clytia hemisphaerica|type=CDS|length=3090bp|location=Sequence derived from alignment at sc0000198:330953..334561+ (Clytia hemisphaerica)
ATGCGGGAGAGATGGTTGCTAACGCTGTTTATAATCGTTACGTTTGTGAC
AGGATCGCAAGAagagaacaagaagaaaaagagTGGTCTTCAAATCGAAA
GTATCGAATACAAAACACTCATACCAAAAGATTCCAACGCTGGTTTTTCT
CAGGATGATGACATTATGACGGGAGCGTCGACCGCTTCTATATCACCTTC
AAAACCTACGGTAAGCGTCAACGTAGAGGATGACGCCGTCGATTTGATGT
CCCCACGTTCGAAACGGGAAGCCGATTACCCATCCTTTGACGATATCTAT
TCTTATATACATCATCCATCTAATGAACTTTTTGATGAACTAACAGCTAC
AGCAACTGTCACTGGCCCCGTAAGTGACGGCGGTGATGACGGGGCTCCAA
GCCCGCATGCCGGTGCCGGTATGAAAGGAATCATGAATGAATTGAAAGCT
TCTAAACACCACAAGTTAACGAGAAACGATATCCGGCAACTCGCAAAGAA
GGCAGTCATTCTTGCTACACTGAAGAAATTAAAGGACTCAAAAACAGGAA
CAGCTAAATCTTCCACACCTGCAAAACCTTCTCCCATAACGACTCCAAAA
TCAAGTAAAAAGCATAAGAAGGGAAAGAAATCGAAGAAAAAGCATCACTC
TGAGAAACACACTCACATCTCAGAAAGCACAACACCTTCGATCACTTCTA
CAACATCATCCAAGGATAACGAAATGTCTGAAGATCTCTCCAAAGCATCC
ACCAATCACCAAGATGCTTTGAATGATGATTCTTCAGCTACATCAAGTCC
AGTTAATGCGGATCTCCTGCCAAACAATGATGCAGTTGATATATCCAAGA
AATCAAACATCGGGAAGATTGATGACAGTGTTGCCAACATGTTTGAGGAC
GCTGACTCCACCAAAACGCCTACCGAAAAATCAACATCCACAGGAAGAAC
ACAATTAACagaaaaagtaaaatctttACGTTCTTTCTTAGTGAAGGCAG
ATCCTGCAGTTATCCCATTGAAGTTCTTACCAGATTTACCATCAGGTTTG
CGTATGATTGGCTGGAAAGAAATGATCGATAAGAAAAAGAAGCAGCTGAA
TGAGCTGGAAGCGACCGTCGGTGCAGTTGACGATGCAACTGAAACGAAAC
CAGTTAGTCTTAACATCGACGTTGAAGATCAGACCCCAAGCAAGACAACT
GCTGCAGCTGCCGAAGAAAGTGATTTAACAGAGCTGACAGGTGATAAGAA
ATCGTCAGACCCGATCTCACTACAACACATTGGATACTTACAGCGACATA
TCAAGGGCGCACGATCTCTACGTAAATTGATCGCTAAAACATTGGTTGGA
CACTGCAAATCAACTGGTAAACGTATATTTGATGCTTTTGTTGCAATGGA
CAAAGCATTGGCGAGAGCACAAACTATAGCAACGGTCATTGGCAAGAAAT
TTAATATTGATATCGATCGTATTGACGCGCTAGTTGGTGATAAAGAGGAT
CAGGTGGTCGAAACATTCTTAAAAgacattttcaccaaaatataaATGCG
GGAGAGATGGTTGCTAACGCTGTTTATAATCGTTACGTTTGTGACAGGAT
CGCAAGAagagaacaagaagaaaaagagTGGTCTTCAAATCGAAAGTATC
GAATACAAAACACTCATACCAAAAGATTCCAACGCTGGTTTTTCTCAGGA
TGATGACATTATGACGGGAGCGTCGACCGCTTCTATATCACCTTCAAAAC
CTACGGTAAGCGTCAACGTAGAGGATGACGCCGTCGATTTGATGTCCCCA
CGTTCGAAACGGGAAGCCGATTACCCATCCTTTGACGATATCTATTCTTA
TATACATCATCCATCTAATGAACTTTTTGATGAACTAACAGCTACAGCAA
CTGTCACTGGCCCCGTAAGTGACGGCGGTGATGACGGGGCTCCAAGCCCG
CATGCCGGTGCCGGTATGAAAGGAATCATGAATGAATTGAAAGCTTCTAA
ACACCACAAGTTAACGAGAAACGATATCCGGCAACTCGCAAAGAAGGCAG
TCATTCTTGCTACACTGAAGAAATTAAAGGACTCAAAAACAGGAACAGCT
AAATCTTCCACACCTGCAAAACCTTCTCCCATAACGACTCCAAAATCAAG
TAAAAAGCATAAGAAGGGAAAGAAATCGAAGAAAAAGCATCACTCTGAGA
AACACACTCACATCTCAGAAAGCACAACACCTTCGATCACTTCTACAACA
TCATCCAAGGATAACGAAATGTCTGAAGATCTCTCCAAAGCATCCACCAA
TCACCAAGATGCTTTGAATGATGATTCTTCAGCTACATCAAGTCCAGTTA
ATGCGGATCTCCTGCCAAACAATGATGCAGTTGATATATCCAAGAAATCA
AACATCGGGAAGATTGATGACAGTGTTGCCAACATGTTTGAGGACGCTGA
CTCCACCAAAACGCCTACCGAAAAATCAACATCCACAGGAAGAACACAAT
TAACagaaaaagtaaaatctttACGTTCTTTCTTAGTGAAGGCAGATCCT
GCAGTTATCCCATTGAAGTTCTTACCAGATTTACCATCAGGTTTGCGTAT
GATTGGCTGGAAAGAAATGATCGATAAGAAAAAGAAGCAGCTGAATGAGC
TGGAAGCGACCGTCGGTGCAGTTGACGATGCAACTGAAACGAAACCAGTT
AGTCTTAACATCGACGTTGAAGATCAGACCCCAAGCAAGACAACTGCTGC
AGCTGCCGAAGAAAGTGATTTAACAGAGCTGACAGGTGATAAGAAATCGT
CAGACCCGATCTCACTACAACACATTGGATACTTACAGCGACATATCAAG
GGCGCACGATCTCTACGTAAATTGATCGCTAAAACATTGGTTGGACACTG
CAAATCAACTGGTAAACGTATATTTGATGCTTTTGTTGCAATGGACAAAG
CATTGGCGAGAGCACAAACTATAGCAACGGTCATTGGCAAGAAATTTAAT
ATTGATATCGATCGTATTGACGCGCTAGTTGGTGATAAAGAGGATCAGGT
GGTCGAAACATTCTTAAAAgacattttcaccaaaatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014778-exon-sc0000198-1491911889:330953..331289 | TCONS_00014778-exon-sc0000198-1491911889:330953..331289 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1510915933:330953..331289 | TCONS_00014778-exon-sc0000198-1510915933:330953..331289 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1575043694:330953..331289 | TCONS_00014778-exon-sc0000198-1575043694:330953..331289 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1491911889:331851..331908 | TCONS_00014778-exon-sc0000198-1491911889:331851..331908 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1510915933:331851..331908 | TCONS_00014778-exon-sc0000198-1510915933:331851..331908 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1575043694:331851..331908 | TCONS_00014778-exon-sc0000198-1575043694:331851..331908 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1491911889:332286..334561 | TCONS_00014778-exon-sc0000198-1491911889:332286..334561 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1510915933:332286..334561 | TCONS_00014778-exon-sc0000198-1510915933:332286..334561 | Clytia hemisphaerica | exon |
| TCONS_00014778-exon-sc0000198-1575043694:332286..334561 | TCONS_00014778-exon-sc0000198-1575043694:332286..334561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:330953..334561 + |
Blast
The following BLAST results are available for this feature:
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