XLOC_008652 (gene) - C. hemisphaerica

Overview
NameXLOC_008652
Unique NameXLOC_008652
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000212:72534..79553+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008652 ID=XLOC_008652|Name=XLOC_008652|organism=Clytia hemisphaerica|type=gene|length=7020bp|location=Sequence derived from alignment at sc0000212:72534..79553+ (Clytia hemisphaerica)
TATGTACTGGTATGTTCGACAACGCAGCAAGCTAAACTTCAAAGTGCTCT
GGTGACAACAGCAGTCTGTGCTCGCGTACCCAAGCCGCACATTTCTGCGG
ATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAA
GGCTTTATCTACTTCCCAGAGCTGCTGAAGTCAATATCGTTGCTTTCTTC
TATCACTATCTTTTtcaatttacaagtttttttgctACTACTTTATAGCA
CCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATT
GAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTC
CATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAAC
TGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGT
AATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGGT
TTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATTGCTCTCC
ATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATTT
GAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCTG
TTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtcataatttc
atttttccaatacCAAAAATCCATTAACTTTGAACAGGTATTCCAGCGAC
CGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACAC
ATCGATGGTGATCACTTGACTCTTCNTTACCCAAGCCGCACATTTCTGCG
GATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAA
AGACTTTATCTACTTCCCAGAACTGCTGAAGTCAATATCGTTGCTTTCTT
CTATCACTATCTTTTtcaatttacaagtttttttgctACTACTTTATAGC
ACCTGAGACGTTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCAT
TGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTT
CCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAA
CTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAG
TAATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGG
TTTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATTGCTCTC
CATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATT
TGAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCT
GTTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtcataattt
catttttccaatacCAAGAATCCATTAACTTTGAACAGGTATTCCAGCGA
CCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACA
CATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTTTCAAAC
AAAGTAAGTGATGACAACGTACTTTAGAAGCTATATTCAGTGCATCGAGC
ATTGTTTGTAGTTAATTCAGGTTAATTGTTCAATGGTAtagaaatgggct
tttccagaaaaaaatcgtgcaccccctgttgaggaggtccaatggggtaa
ggtttgaaatgcagtggaattccataggggtagacgaaaatccgtcaaaa
ataagcggaattccaagggggtaatgattagaaatttgtaaaaattcgga
attccagaggggtatgatcctaaaattggcTGGAATTCCAAgagggtagg
tcacaaaaggttggacctcctcaacaggggatgcacggtttttttctgga
aaagcccaatgttaAATTTGTAATTCCAAACGGTTGGTGAAAATAACCTA
TTATTATAATCCTGGTACTCAAAGGTAGGCAATTTTTAAAACTCGTGTTT
CAATATCTATAATCCTTCTAACATGTAAATGTAACAAGTAGCACTCCTCT
CGAGTAAAATGCATCACTGGCCCGGAGTAATCTACACCTCAATATTCGCG
CAAATTTattattcttccaggaagtaaaATTTTATTTCCTGTAAGTTTAT
TTTACTCATAAGAAGATTGTAGGCTTGGTATACATTAAAGATTTGATAAG
TGTTTTACCACTTTGGAGCGCTATGCATGTTTATTTCAGTGCTATACTCA
TAAACAaagctttttttctttgtcactTTCGAGATTATTCAAAATGTTGC
GTCTCATGAAACAAACGATCATAATATATTTCAGACCACGAAGAAACTCA
ATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAATCAGCTGACA
ATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAATTTGAAACGC
ACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACATTCGAAAATC
ATTGGTCACTGGGTTCTTCATGCAGGTGcgcttttcttttcctttttcat
tttcttggtaGAACCTCAAGACGTTCAATcaaattgggctattccagaaa
tagtctgtaccccatGTTGAGGAGATGTGACGTCCACAGTGGGTTCGACt
gacaattcctgcattaataacacgcatgcgtaatttgtcgttcttttaga
ccacaagtagttatttcccgtggggtggtacagtcactctcggtcggggt
tgtggacggctaaatgtgaaatttgtcgttcttttttgtcgttttttatg
aaatttgtcgttcttttgtctatttttagtaatgcaggaattGTAAGATA
GAGGCTCTCCCAGGGTGgtctagaaaataaaaaatccagggtggtcagta
aaatcgggttgaaaatccagggtggtccaaagaaatgggaaaaattgccc
tgaaaaattgggaaaaaatccAGAGGGtcacatttaaaaaaagaagatcT
CAACTTAACGGGGTACAATTtctttctggaatagcccatttctTTCTACC
AGTTTTAACTCCTTAGCCGAATGCTGATTATATCGCTGATCGTATCCCTG
ATTGTATCCCTCTCCTTAATTATAGCAGTAGCTAGAAacgttttctatat
tttttacgCCTTATTCAGCCGTTTGGCAGGCCAACTTAATTGAACTTTTG
TCATTGAGAATCCTTTGTCTCAGTGCCGTGGTGTCGTGATACATGTTTTG
GTATAGGGGGAGGGAAGGACAACCTATTCAAAAGATACATACCAATCTTT
TTTCAGTCTTTCTTTGTCTTAATCCATTCTGTAATGTCAAATTCCCAATG
AAGaattttatttcacttttgactttttattttcgGGTGGGGTCAAAAAA
CTTGTCTCGTCTTAAGTAAGTAAGATTGCGACCGCAGTcaagggcgaccc
gaaggctcccttttcgtatagctgtctacccgaaggtaggggagggcgcc
actcctttccctggatttctccacttacccttgatccgtctctttagttg
ctgggcatcaagcagagaggcaccaagtaccattttgggaatctttggta
tgacccggctggggatcgaacccacaattttgcgcaccgtagctggatgc
tctaccctCATGCTACGGTCGCTAACGTCTCGGCTTACTAGTATAGTATA
GACCTGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAA
GAGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataatcTATCC
gcttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATG
AAAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGT
CCCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGG
TAGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCAT
CTTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTG
GACACTACTTAACCGTCAAAGATAATCAGGTAAGTAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAAGAGTTC
TCTCTAccttcaaaataaaagaaattatgaaaaataatcTATCCgctttt
ttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATGAAAAAG
GGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGTCCCATC
GGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGGTAGGAG
ATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCATCTTGTG
TGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTGGACACT
ACTTAACCGTCAAAGATAACCAGGTAAGTAGTTATAGAAACAAATTTCTC
TTTTTGGGTgtcctttttgtttttattgaaattactTCGATTCTCTCTGA
AGCAAGTTTACTTTAAAAGATATTTACAATGTGAGGCTGCCACTTCTTTC
TAATAAAAATCGTTCACGGAAATTACtgaaaattcttcttttctgcGTTT
CATACTGTCATCTGTCTTTTTCACCAACTTCAAGGTCATATATAATCTTA
TTTCTTTTTAACACTCATTTTAACAATTTCTTGTTTCTCTCCATAATTTC
ACCGAATAATAACAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCA
TAAACCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACT
ACATCAGAACATGTAGCGATGTCAAACCTGAATGGTAAGAACATATATTT
TTGCCAGAAGTTGGTACCAGTGTTTGACGATATTACGAAAATCATTATAA
CCCaacaaaatatcttttcaaaaaaataaaagttaaactctTCTTTGTTA
TACagaaaacatctatctcataaattGAATATTATTCTGGCCTTCTCTGG
TAGTCTAGCCTGCCAAGGCAAAAAATAACGAAAGGGTCAGATTAAGTTCA
CACAAACTGATATGCTCCCGTTACGACTGTTGTATGTTGTATTAGTATAT
AACAGCAATATTACTGTATACATGGATTATAAACGATATTATTCTAGCCT
TCTGGTTGTGCAAAGGCTCCTTTTAATACTCCTCgtagtgtccttcaggg
tctcttccccccatgcctagaatgaaaattttccatccccccTCATTTTT
CCCCACCCTGCCTCCAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntatacgtccttttgacctcaaaacccatcccccctgaatccaggggggg
gaggacactatgctcCTGTTTCCCTCACGATATAACAAGTCTCAATTTCT
ATTTGGTTTAGGTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAA
CTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAG
CCTATCGTCGACAACAAGAACAGTGAATAACTGGGAAAGTTATAAATATC
GTGAATTTTTATGAGTATTATCTACAACATGAACAGTATTTAAGGAGGTG
ACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCTCTGTGCCAAACAA
TTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAACTTGCCCGTAAAA
CCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGCCTTGATGCCCAAT
TTCGAACAGGTATCTTCAAGGATAATTGTGTTACAATTGTATTGACTTGG
TAACAATGGATATTGATTATTTAGATGGATAATATTATCAACACAACAGA
ATACATAACACAAGTTTTTTAATCTTTAAGATCGTCAATTTTCTCTTAGG
ACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAAGGCCATATAGACT
GGATGATGCGCTTAAGCAGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015496TCONS_00015496Clytia hemisphaericatranscript
TCONS_00015497TCONS_00015497Clytia hemisphaericatranscript
TCONS_00015498TCONS_00015498Clytia hemisphaericatranscript
TCONS_00015499TCONS_00015499Clytia hemisphaericatranscript
TCONS_00015500TCONS_00015500Clytia hemisphaericatranscript
TCONS_00015501TCONS_00015501Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015499-proteinTCONS_00015499-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:72534..79553 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
131.97	129.46	156.98	146.95	141.23	111.75	105.08	116.11	112.09	87.4	131.05	127.36	120.6	122.82	107.31	109.02	93.67	93.6	52.78	55.54	96.45	97.61	83.92	82.61	149.94	166.23	68.18	80.57	53.13	54.95