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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015497 ID=TCONS_00015497|Name=TCONS_00015497|organism=Clytia hemisphaerica|type=transcript|length=1422bp CAGTCTGTGCTCGCGTACCCAAGCCGCACATTTCTGCGGATAGTCGTAAT TAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAAGGCTTTATCTA CTTCCCAGAGCTGCTGAAGTCAATATCGTTGCTTTCTTCTATCACTATCT TTTtcaatttacaagtttttttgctACTACTTTATAGCACCTGAGACATT GATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGATG GTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATCCA CAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAATGA AGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTATTCCAGCGAC CGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACAC ATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTTTCAAACA AAACCACGAAGAAACTCAATGGTGTTACGATAACTTCTTGAACAACCGAT CGCTCAAATCAGCTGACAATGTTCGCCAACAATTAGCTCGTATTATGGAC AGGTTCAATTTGAAACGCACCAGTACTGAGTTCAACAGTCGTGAATATTA CGTCAACATTCGAAAATCATTGGTCACTGGGTTCTTCATGCAGATTGCAC ATTTGGAAAGGACTGGACACTACTTAACCGTCAAAGATAACCAGGTGGTA CAATTGCATCCATCCACGTGTTTGGACCATAAACCTGAATGGGTTTTATA CAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAACATGTAGCGATG TCAAACCTGAATGGTTGGTTAAGCTTGCTCCACAATATTACGATATGCGC AACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAA AGCCTATCGTCGACAACAAGAACAGTGAATAACTGGGAAAGTTATAAATA TCGTGAATTTTTATGAGTATTATCTACAACATGAACAGTATTTAAGGAGG TGACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCTCTGTGCCAAAC AATTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAACTTGCCCGTAA AACCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGCCTTGATGCCCA ATTTCGAACAGGTATCTTCAAGGATAATTGTGTTACAATTGTATTGACTT GGTAACAATGGATATTGATTATTTAGATGGATAATATTATCAACACAACA GAATACATAACACAAGTTTTTTAATCTTTAAGATCGTCAATTTTCTCTTA GGACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAAGGCCATATAGA CTGGATGATGCGCTTAAGCAGG Run BLAST on NCBI transcript from alignment at sc0000212:72595..79553+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015497 ID=TCONS_00015497|Name=TCONS_00015497|organism=Clytia hemisphaerica|type=transcript|length=6959bp|location=Sequence derived from alignment at sc0000212:72595..79553+ (Clytia hemisphaerica) CAGTCTGTGCTCGCGTACCCAAGCCGCACATTTCTGCGGATAGTCGTAAT
TAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAAGGCTTTATCTA
CTTCCCAGAGCTGCTGAAGTCAATATCGTTGCTTTCTTCTATCACTATCT
TTTtcaatttacaagtttttttgctACTACTTTATAGCACCTGAGACATT
GATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGATG
GTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATCCA
CAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAATGA
AGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTAATAATGATTT
TCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGGTTTAAAacattg
tcaaaaatattttatctccGCCTCAGCAAATTGCTCTCCATTTCGCAATA
TATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATTTGAGAAACAAAG
GTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCTGTTCTAATTATC
ATCCTACTTTAAATGTCTTGAAATTCAATtcataatttcatttttccaat
acCAAAAATCCATTAACTTTGAACAGGTATTCCAGCGACCGAATGAAGCG
AAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACACATCGATGGTGA
TCACTTGACTCTTCNTTACCCAAGCCGCACATTTCTGCGGATAGTCGTAA
TTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAAGACTTTATCT
ACTTCCCAGAACTGCTGAAGTCAATATCGTTGCTTTCTTCTATCACTATC
TTTTtcaatttacaagtttttttgctACTACTTTATAGCACCTGAGACGT
TGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGAT
GGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATCC
ACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAATG
AAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTAATAATGATT
TTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGGTTTAAAacatt
gtcaaaaatattttatctccGCCTCAGCAAATTGCTCTCCATTTCGCAAT
ATATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATTTGAGAAACAAA
GGTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCTGTTCTAATTAT
CATCCTACTTTAAATGTCTTGAAATTCAATtcataatttcatttttccaa
tacCAAGAATCCATTAACTTTGAACAGGTATTCCAGCGACCGAATGAAGC
GAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACACATCGATGGTG
ATCACTTGActcttctaaatgtttatcatGCTTTCAAACAAAGTAAGTGA
TGACAACGTACTTTAGAAGCTATATTCAGTGCATCGAGCATTGTTTGTAG
TTAATTCAGGTTAATTGTTCAATGGTAtagaaatgggcttttccagaaaa
aaatcgtgcaccccctgttgaggaggtccaatggggtaaggtttgaaatg
cagtggaattccataggggtagacgaaaatccgtcaaaaataagcggaat
tccaagggggtaatgattagaaatttgtaaaaattcggaattccagaggg
gtatgatcctaaaattggcTGGAATTCCAAgagggtaggtcacaaaaggt
tggacctcctcaacaggggatgcacggtttttttctggaaaagcccaatg
ttaAATTTGTAATTCCAAACGGTTGGTGAAAATAACCTATTATTATAATC
CTGGTACTCAAAGGTAGGCAATTTTTAAAACTCGTGTTTCAATATCTATA
ATCCTTCTAACATGTAAATGTAACAAGTAGCACTCCTCTCGAGTAAAATG
CATCACTGGCCCGGAGTAATCTACACCTCAATATTCGCGCAAATTTatta
ttcttccaggaagtaaaATTTTATTTCCTGTAAGTTTATTTTACTCATAA
GAAGATTGTAGGCTTGGTATACATTAAAGATTTGATAAGTGTTTTACCAC
TTTGGAGCGCTATGCATGTTTATTTCAGTGCTATACTCATAAACAaagct
ttttttctttgtcactTTCGAGATTATTCAAAATGTTGCGTCTCATGAAA
CAAACGATCATAATATATTTCAGACCACGAAGAAACTCAATGGTGTTACG
ATAACTTCTTGAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAA
CAATTAGCTCGTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGA
GTTCAACAGTCGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTG
GGTTCTTCATGCAGGTGcgcttttcttttcctttttcattttcttggtaG
AACCTCAAGACGTTCAATcaaattgggctattccagaaatagtctgtacc
ccatGTTGAGGAGATGTGACGTCCACAGTGGGTTCGACtgacaattcctg
cattaataacacgcatgcgtaatttgtcgttcttttagaccacaagtagt
tatttcccgtggggtggtacagtcactctcggtcggggttgtggacggct
aaatgtgaaatttgtcgttcttttttgtcgttttttatgaaatttgtcgt
tcttttgtctatttttagtaatgcaggaattGTAAGATAGAGGCTCTCCC
AGGGTGgtctagaaaataaaaaatccagggtggtcagtaaaatcgggttg
aaaatccagggtggtccaaagaaatgggaaaaattgccctgaaaaattgg
gaaaaaatccAGAGGGtcacatttaaaaaaagaagatcTCAACTTAACGG
GGTACAATTtctttctggaatagcccatttctTTCTACCAGTTTTAACTC
CTTAGCCGAATGCTGATTATATCGCTGATCGTATCCCTGATTGTATCCCT
CTCCTTAATTATAGCAGTAGCTAGAAacgttttctatattttttacgCCT
TATTCAGCCGTTTGGCAGGCCAACTTAATTGAACTTTTGTCATTGAGAAT
CCTTTGTCTCAGTGCCGTGGTGTCGTGATACATGTTTTGGTATAGGGGGA
GGGAAGGACAACCTATTCAAAAGATACATACCAATCTTTTTTCAGTCTTT
CTTTGTCTTAATCCATTCTGTAATGTCAAATTCCCAATGAAGaattttat
ttcacttttgactttttattttcgGGTGGGGTCAAAAAACTTGTCTCGTC
TTAAGTAAGTAAGATTGCGACCGCAGTcaagggcgacccgaaggctccct
tttcgtatagctgtctacccgaaggtaggggagggcgccactcctttccc
tggatttctccacttacccttgatccgtctctttagttgctgggcatcaa
gcagagaggcaccaagtaccattttgggaatctttggtatgacccggctg
gggatcgaacccacaattttgcgcaccgtagctggatgctctaccctCAT
GCTACGGTCGCTAACGTCTCGGCTTACTAGTATAGTATAGACCTGTAAAA
ATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAAGAGTTCTCTCT
AccttcaaaataaaagaaattatgaaaaataatcTATCCgcttttttata
tcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATGAAAAAGGGAAT
AGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGTCCCATCGGTCT
TTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGGTAGGAGATTCT
ATATGAACATTAACTAAACGTAAAAACTCCCTATTCCATCTTGTGTGTGA
TTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTGGACACTACTTA
ACCGTCAAAGATAATCAGGTAAGTAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAAATCTCA
TATGATGCCAGTACCACTTTGGGGTTTTATTAAGAGTTCTCTCTAccttc
aaaataaaagaaattatgaaaaataatcTATCCgcttttttatatctttt
gaaTAGATAACGGTCCTTCCCTGACATTTGATGAAAAAGGGAATAGCTAG
AATGTATCACACACCACCTTTGTGTGAAGGGGTCCCATCGGTCTTTCCTT
CGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGGTAGGAGATTCTATATGA
ACATTAACTAAACGTAAAAACTCCCTATTCCATCTTGTGTGTGATTGGTT
GGTTGGTACAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTC
AAAGATAACCAGGTAAGTAGTTATAGAAACAAATTTCTCTTTTTGGGTgt
cctttttgtttttattgaaattactTCGATTCTCTCTGAAGCAAGTTTAC
TTTAAAAGATATTTACAATGTGAGGCTGCCACTTCTTTCTAATAAAAATC
GTTCACGGAAATTACtgaaaattcttcttttctgcGTTTCATACTGTCAT
CTGTCTTTTTCACCAACTTCAAGGTCATATATAATCTTATTTCTTTTTAA
CACTCATTTTAACAATTTCTTGTTTCTCTCCATAATTTCACCGAATAATA
ACAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAACCTGAAT
GGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAACA
TGTAGCGATGTCAAACCTGAATGGTAAGAACATATATTTTTGCCAGAAGT
TGGTACCAGTGTTTGACGATATTACGAAAATCATTATAACCCaacaaaat
atcttttcaaaaaaataaaagttaaactctTCTTTGTTATACagaaaaca
tctatctcataaattGAATATTATTCTGGCCTTCTCTGGTAGTCTAGCCT
GCCAAGGCAAAAAATAACGAAAGGGTCAGATTAAGTTCACACAAACTGAT
ATGCTCCCGTTACGACTGTTGTATGTTGTATTAGTATATAACAGCAATAT
TACTGTATACATGGATTATAAACGATATTATTCTAGCCTTCTGGTTGTGC
AAAGGCTCCTTTTAATACTCCTCgtagtgtccttcagggtctcttccccc
catgcctagaatgaaaattttccatccccccTCATTTTTCCCCACCCTGC
CTCCAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatacgtcct
tttgacctcaaaacccatcccccctgaatccaggggggggaggacactat
gctcCTGTTTCCCTCACGATATAACAAGTCTCAATTTCTATTTGGTTTAG
GTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAACTTCCCAAATT
GCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAGCCTATCGTCGA
CAACAAGAACAGTGAATAACTGGGAAAGTTATAAATATCGTGAATTTTTA
TGAGTATTATCTACAACATGAACAGTATTTAAGGAGGTGACGATCAAGGT
ATTGTACGTAGAAAAGAGACAGGCCTCTGTGCCAAACAATTTTAAAGGAC
ATGTCTAGGGTTTAGTTGTTATAAAACTTGCCCGTAAAACCGGCTTACCG
TTTGAAGTATCAGCTAAAGGTTAAGCCTTGATGCCCAATTTCGAACAGGT
ATCTTCAAGGATAATTGTGTTACAATTGTATTGACTTGGTAACAATGGAT
ATTGATTATTTAGATGGATAATATTATCAACACAACAGAATACATAACAC
AAGTTTTTTAATCTTTAAGATCGTCAATTTTCTCTTAGGACTTTTCCACT
TTTATTAGCCCGCGGGGTCTACTGAAGGCCATATAGACTGGATGATGCGC
TTAAGCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015497-exon-sc0000212-1491911889:72595..72981 | TCONS_00015497-exon-sc0000212-1491911889:72595..72981 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:72595..72981 | TCONS_00015497-exon-sc0000212-1510915933:72595..72981 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:72595..72981 | TCONS_00015497-exon-sc0000212-1575043694:72595..72981 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:73271..73333 | TCONS_00015497-exon-sc0000212-1491911889:73271..73333 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:73271..73333 | TCONS_00015497-exon-sc0000212-1510915933:73271..73333 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:73271..73333 | TCONS_00015497-exon-sc0000212-1575043694:73271..73333 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:74085..74136 | TCONS_00015497-exon-sc0000212-1491911889:74085..74136 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:74085..74136 | TCONS_00015497-exon-sc0000212-1510915933:74085..74136 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:74085..74136 | TCONS_00015497-exon-sc0000212-1575043694:74085..74136 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:74918..75108 | TCONS_00015497-exon-sc0000212-1491911889:74918..75108 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:74918..75108 | TCONS_00015497-exon-sc0000212-1510915933:74918..75108 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:74918..75108 | TCONS_00015497-exon-sc0000212-1575043694:74918..75108 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:77106..77156 | TCONS_00015497-exon-sc0000212-1491911889:77106..77156 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:77106..77156 | TCONS_00015497-exon-sc0000212-1510915933:77106..77156 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:77106..77156 | TCONS_00015497-exon-sc0000212-1575043694:77106..77156 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:77449..77567 | TCONS_00015497-exon-sc0000212-1491911889:77449..77567 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:77449..77567 | TCONS_00015497-exon-sc0000212-1510915933:77449..77567 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:77449..77567 | TCONS_00015497-exon-sc0000212-1575043694:77449..77567 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1491911889:78995..79553 | TCONS_00015497-exon-sc0000212-1491911889:78995..79553 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1510915933:78995..79553 | TCONS_00015497-exon-sc0000212-1510915933:78995..79553 | Clytia hemisphaerica | exon |
TCONS_00015497-exon-sc0000212-1575043694:78995..79553 | TCONS_00015497-exon-sc0000212-1575043694:78995..79553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000212 | supercontig | sc0000212:72595..79553 + |
Blast
BLAST of TCONS_00015497 vs. Swiss-Prot (Human)
Match: DHX15 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 447.203 bits (1149), Expect = 1.773e-148 Identity = 220/263 (83.65%), Postives = 238/263 (90.49%), Query Frame = 1
Query: 187 APETLMRALELLNYLDALNDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQVFQRPNEXXXXXXXXXXXXXHIDGDHLTLLNVYHAFKQNHEETQWCYDNFLNNRSLKSADNVRQQLARIMDRFNLKRTSTEFNSREYYVNIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTCSDVKPEWLVKLAPQYYDMRNFPNCEAKKVLERLINKAYRRQQEQ 975
APETLMRALELLNYL ALNDDGDLTELGSMMAEFPLDPQLAKMVIAS D+NCSNE LSI AMLSV Q F RP EAKKAADEAKM+FAHIDGDHLTLLNVYHAFKQNHE QWCYDNF+N RSL SADNVRQQL+RIMDRFNL R ST+F SR+YY+NIRK+LVTG+FMQ+AHLERTGHYLTVKDNQVVQLHPST LDHKPEWVLYNEFVLTTKNYIRTC+D+KPEWLVK+APQYYDM NFP CEAK+ L+R+I K ++ Q
Sbjct: 532 APETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQ 794
The following BLAST results are available for this feature:
|