XLOC_008718 (gene) - C. hemisphaerica

Overview
NameXLOC_008718
Unique NameXLOC_008718
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000214:390347..400585+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008718 ID=XLOC_008718|Name=XLOC_008718|organism=Clytia hemisphaerica|type=gene|length=10239bp|location=Sequence derived from alignment at sc0000214:390347..400585+ (Clytia hemisphaerica)
ACAACCACTGCACCGCCAACCCACCCACCCACAACCACTGcaccaaaaac
cactcaaaaatCGTCAACCGTACCCACGACAACCAATCCGACATCCTCGA
GTAgtaagtcaatttttttggtcaTCATATTCATCGAGTTCACATGGAAT
AGCTAAAGGGAATAATTGTTGATAAAGTTGGGAATTGGCCttaaattaaa
catttttgCCACTTTCCTAAATAAATTCTCGCAACATTCCATTCACTTTT
GTTCATTTCTTCATTCTTCTTAAAATGCTCTTTTGCGTATAATTCTTATG
ATATTCAAGAAGAAAATGACAGAtcaaattacaaaattttctcccgctaa
attcaaaaatattcttgaaGCGCCCAAATAAATCCTGGAAAATTAAATGA
GCAATCATTCGCCAAAATCTCTTTCTTGAAATCACACATTGAACAgcaga
aaatctttttgattaagtttgattttAAGGAGGGCAGTAATTTTCGATAG
GCTGAATCAAATTAGGTCTTTTAAAACAATGCTTGTAACAATTTAAAGAT
GTCAAAAACCGCGGgctttgatttttgggaaaaataatCAATATCAAATA
TCGaagtgaaaatatcaaaatcatctGTCAGAATTAGCTCGTGATTTTTC
TCCTGTATTTCCCCAGAGTCGAACAAGCggccttttttctttttcgtttt
ttgtgtatgtaatttttcgtatattttacagacccaGAGCCGTGCAAGAG
ACTTGGTTTGGAATGTGTTGTCTGTTCACAATGCGGTGAAAATGGATTTT
GTATCACCAATCTGGATTTACGAGNTGCAAGCGACTTGGTTTGGAATGTG
TTGTCTGTTCACAATGCGGTGAAAATGGATTTTGTATCACCAATCTCGAT
TTACGAAATTCCAACATGGTTTGTTTATGTCGATATGGTTTCACTGGAAG
TCAAGCTAAATTTGTTCCTCAACGTTTGGAAACAAGTGCTTTTACCAAAA
ATCGAATAAGAGCTGACTCTTGTGACCTCAAGTGCAATTATTCACCTCAT
AACAGGTATCTAACCTCTTCCATTGGTTCGCTTGACTGCGTTAAacgttt
ttttcatgaaaaaaactatataagaacataaggcttcgatggccaaaatg
ttaaaaataagttaagaacatttttaggcttgaaactcacaaagttaaga
acatctgtagggtaggcttcaaaaattttagatgttctaataaaagaaac
gTGTACTTTATCACACACAATAAGATCTGCCATGTTTGAGTTGTTTTTAA
ATTGGTACCTGCAAAAAGCTATTGTAgtgctaaaactttggggctaAAAC
GGGGCTACATCACTTGTGTTCAAGCGAAGCGCTCTCGatgtgtttttcaa
aaaaactcattcAATTTAACACTTTTTCAATACGAAGCTTTGCCAAGATC
AACATCATGGAAACTGGATTGAAttgatgtttcaatttttttttctgata
tttttcacTTGTAGAAACGAACAATGTGTCAACAGTGCTTTGCCTTCCGT
CATTCCCACGACAACGATTACATCATCAACAACGACGTCGACAACAACGG
CCCAACCCTCGTCACCAGTCCCTCAAACCACACAAGCGACGCCGACAACC
GCCAAGATACAAACTGTCACTTACagtaaagttttgattttcttttaggG
GATAATTAGGTGGTTTCAAATTCTAGAATTAGAAACCCGTAGGGGAGAGG
GGTGCTAGAGTTGGCTGATGAGGGATATGCACGGACGGGActtccgaaaa
ccgacccttagagaaacCAAATTTAATGTGAAAAATGCCCCTTAGATAGT
CTACGATTTTTGTAAATgtcttttttacaattttttacaatttttgaaga
tttcctataaatcgtgaattttccgatTCTTTGAGGGACTACATTGAAAT
TCTCCGCCGATTTCTGTAGCCCTTAGGGAGACTTTGGTAGGTGAAAAAAG
CGACCCTTATTATTGTCCACACATATCCAGAACCCAGTACCCTCACCCGG
TTAGAAACCCTTTGTTGTGTGAGTGAAACCTCTAAATATTTTGGTCTAAC
GTCTTTCTGAAGTTGAGATATGACAGAAATCTCTAAAAATCTCTTGATAC
TTGAATATCTCGActtaaaaaaaagacaaaaatatttagaaGTTTTTCCC
AGGACCTCGAAAATAACCGACAGGCTAAagatctcaaaccatctgattat
ccctttaacttttttttcacatacacgtaatattttcttacacAAAAAGC
TTCGCGAAAAAACGTTCTGACCattcacattttttacaattttcatcatG
AGGTAATCACAAATTCTGAAAgaattcagaaattttgactGATTGTTAAA
AGAATGCATTTTAGTATCTTAatcaagggaagaaattttggtggatcTGG
AGAATTACCTCGAAAATTCGCCAAAAGAAATTTCCGCCATATTCAGATTT
ACAGGCCATTTggcaaaattaattctcgcaaaattaaaaaattttattaa
gtcgccaaaataaattctgccaaattgcaccaaaattggtGAATGggctc
attcgccaaaatttcttctcttaaggtattcTATTTTTTTCAGCTTTCTT
ATCAAAAAGTGTATTTTACTTTCAGACCCAAACAACCCTCCCGAATGTAG
AGTGTCCGGATTAAATTGCATCCGGTGTGATCAATGCGGGCAGTCCGGAT
ATTGTGTTACGAATGATGGATCGGAACTAAAGTGTTTGTGCCAATACGGG
TTTACCGGTGTGGATGGTGGCCAGTATATCGGAGAACATCCGGTTAACAc
attctttttgtttacaaagaATCGGATTCGAGCGAAAGACTGTCTCAGAC
AATGTCATTACAGCCCGTTCCGCAGGTACCATAAACTCTCGATAACCATT
CTAACTCAAAATTTCTTAGCTCGAACAATTCTGGCTGCAACTTTCTAAAC
TCGAAGAATTCTGACTGCAACTTTATAACTTGAACCACCGTAACTCGATT
TTTCTTAGCTTAGACCATTGTAACTCCAACTTTCTTAGCTTGAACCATTC
TAACTGCAACTTTCTAAACTCGAACAATTCTGACTGCAACTTTATAACTC
GAACCATCGTAACTCGATTTTTCTTAGCTTAGACCATTGTAACTCCAACT
TTCTTTATAGCTCGAATTTTTCTAACTTGAACATCTCCTATAACCTTAGA
CTAGAGTCTAATTctgattgatttttaatttctgTTAGTATTAACGGTGA
GACATTGAGTGAAGCGGGCTGGCTAGAGGATTCCACTACCTAAATATATT
TCACTTtcatttcgaaaaattgtacaaaaataccaaaacaacataaaaat
aaaataaaatacataGAAGTACCTACCAAATGTTAAAAAAGAATAGCACG
CTTAGCCTGCAGATAATGTTCGAGTCTAGTCAAAGAATATAAACGATTAT
CTCCCCTTTCGGAAATACGCAACCGTGGGTTTCTAAAGTTATCTTACAAA
TAGAAGATAGGGTTGCTTTAAACATCAATATTTTTTCAAGGAACACCCAT
TGTGCTAAAGAGTCACCCAGCTATGTGGAAACGNAAATTTTCTGCCGGGA
AAATTTCTGTCGTTATTTTTTGTtatcttttatcatttttaagaaacCCT
CACTGTGTCAAAGAGTCACCCATCCATGTAGAAACAACCAAAACCACCTA
CGCCCCAAAGACGACAACCACGCACGCTCCAAAAACCACAACCACCACAC
ACGCTCCAAAAACCACCACCACAGACTCTCCAAAAACAACAACCACACAC
GCCCCAAAAACCACAACCACCCACGCCCCAAAAACAACCAACCACACCCC
AAAAACAACCACAACCACACACGCCCCAAAGACTACAACAACGCACGCCC
CAAAAACCACAACCCTTGCGCACACAACAGTAACAACAACACCAACGACC
ACCTCTACAACTCCAGCAACGACCAAGCAAACTGAAGAAAGTAAGAAACC
TTCCTGTTGAAATTTTCATCGCTGAGGGCTTCTTTTTTACGCCGAAACGA
TTTTAATCCGAATACGCAACTTTGCTTACAAAGAGACTTAATCGGCCTTT
CGTTACGTTGTGAATATTAAATGCATCATTTTGAATTCAATCTCGACGCA
GTTCACCAAATTCGACTCTATTAAAAAATGTGTCCATTGTAGCGCATTGT
TTTTCGTgcaatttgaaaacaaaacgcCGTGGAATAACATACTTGAATCC
CTCCtgtatattttacagacccaGAACCGTGCAAGCGACTTGGTTTGGAA
TGTGTTGTCTGTTCACAATGCGGTGAAAATGGATTTTGTATCACCAATCT
CGATTTACGAAATTCCAACATGGTTTGTTTATGTCGATATGGTTTCACTG
GAAGTCGAGCTAAATTTGTTCCTCAGCATTTGGAAACAAGTACATTTACC
AAAAATCGAATAAGAGCTGATTCTTGTGAACTCAAATGCAATTATTCGCC
TCATAACAGGTATCTAGTCTCTCGTGTTGAAATTTTCGCGATTATTGCAA
ATTGTTAGAATTCGCGAGATTAAATGATTGCAAAactaaattcccgcgaa
atttggTTATTTCGTTCAAGCTCAGTTATCAAAACTCCCTCATTCTAAAG
TTTTTATAGAAAGGAAGTTTTTAGAAATCAGTAAAACAAATACTTTCACG
CTTTACTTTAAGAGAAAgccaggaaaagttttttactCTCTCGTcatgat
tcgcgaaattaaatctccGCGAAATACAAAAAAATGCAATAATAGCCTGA
ATCACGAAATTTTCTGCCGGGAAAATTTCTGTCGTTATTTTTTGTtatct
tttatcatttttaagaaacCCTCACTGTGTCAAAGAGTCACCCATCCATG
TAGAAACAACCAAAACCACCTACGCCCCAAAGACGACAACCACGCACGCT
CCAAAAACCACAACCACCACACACGCTCCAAAAACCACCACCACAGACTC
TCCAAAAACAACAACCACACACGCCCCAAAAACCACAACCACCCACGCCC
CAAAAACAACCAACCACACCCCAAAAACAACCACAACCACACACGCTCCA
AAGACAACAACCACAACACCAACGACCACCTCTACAACAATAGTAACGAA
CAAGCAAACTGAAAGTAAGAAATTTTCTTGTTAGAATTTTCCCATGAGTA
GTGGAGAAGAAAGAACCTCAAAACATAAGTTCAGGTCAAAATTTAAAGCT
ATGAATGAATCCAAAGTAACCTTTCTCAACTAAATATTCCAATGTTATGC
AAATCAGATTCTTTGCTCTGTCTAAATATATATATAGTCGAACCTCAAAA
TATGACTTCTTTATGAGCGTGTCAATACAATGGCTTTAGATATTGACACA
TTGTTTCCAGAGGTGCTCCCTCTCAAGGATCCCTTTAAGTAATAGGGTTT
GCAAGATGTCCGTGTATTTTACGGGTCTATACCTATTCAAGGGACacttt
gagaaattctttcCGGTATATTTTACAGACTCAGAACCGTGCAAGCGACT
TGGTTTGGAATGTGTTGTCTGTTCACATTGCGGTGAAAATGGATTTTGTA
TCACCAATCTCGATTTACGAAATTCCAACATGGTTTGTTTATGTCGATAT
GGTTTCACTGGAAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGGGGGTAATAATGCGCAC
ATCATCTTTTTTCGCCTATATTGGCTACATAACTTAATTGAATAATGAAG
AGCTCAAATATGTTTAAAATCCTGGACAGAAGTGAGGAAGGTTTGACCAA
TATAAAACTCGTACTACAATTTCACGACACATTTATTTGCACTTTTTGGC
ATCTCAGGGGGCAAAATTCGGAGCATTCTCCGACCTCCATgttgtaccct
gagtatcaacCTCAGGACGACCaagtatagaaattttatcgcgcatgtgt
caatctaatcactatagagagaatcaaagatgaagagcaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATTTCGATTAAGTCCaacattttct
atgtttttgtcgagtttttgagtattttaaagcgtgtaatttgttaAAGA
GGGTCAAAACAGGCCAAAAATAGGCAAAAGCGGCTTCTTTTTACCCGTTT
TTCTCCTTGCGAGCACCTGGAAAACATCTTTCGAAGCTTTTTGTTTTACT
ACTTCTTTTGAGTATATTTACCGAGTTTCAAGACATTTCCATGGCTAAGA
TAAAAAGATATGGACTGATGTTACTGACATAAAACGACTTCTCAATAGTA
ATTCCTTACCNTTTGGTAACTCAGTATACCCTAAAGaacatctgtgccaa
ttttcagcttgatggcaattttgtccgggttgtggtgaaatttcaactaa
ttctacctgactataaGTTCAGGTCAAAATTTAAAGCTATGAATGAATCC
AAAGTAACCTTTCTCAACTAAATATTCCAATGTTATGCAAATCAGATTCT
TTGGTCTGTCTAAATATATATATAGTCGAACCTCAAAATATGACTTCTTT
ATGAGCGTGTCAATACAATGGCTTTAGATATTGACACATTGTTTCCAGAG
GTGCTCCCTCTCAAGGATCCCTTTAAGTAATAGGGTTTGCAAGATGTCCG
TGTATTTTACGGGTCTATACCTATTCAAGGGACactttgagaaattcttt
cCGGTATATTTTACAGACTCAGAACCGTGCAAGCGACTTGGTTTGGAATG
TGTTGTCTGTTCACATTGCGGTGAAAATGGATTTTGTATCACCAATCTCG
ATTTACGAAATTCCAACATGGTTTGTTTATGTCGATATGGTTTCACTGGA
AGTCGAGCTAAATTTGTTCCTCAACGTTTGGAAACAAGTACTTTTACCAA
AAATCGAATAAGAGCTGATTCTTGTGAACTCAAATGCAATTATTCGCCTC
ATAACAGGTACATTCTTTTAAAATGTCCGCATTTTTTAGAAAAGAGAACG
AGAAAGTAATAAAATCTGATCACAACTTCTGACCTCGAAGCTTCAAGTAG
CCGAAAGAAATTCAGCGGCTTAAATGTGGATGAGTAGCTTTCTTTAGGTA
CACTATAGATCTCTAAATAAACAATCGAGTAATGTTTAATAGCTAAATTT
GGCAGCCTAGCAAGCAATGCTGAAGGTTTATAGGTATAAGTCATCCCTTT
CAACCCTTTAAAGCGCGAATAAGCTTGGGTTTAAGTTCACAAGGTAGGAT
TAACGTCAAATGTCGAAATAGgaaatttcgtgttaattaaaaccagccgt
ggtgtcctttaaaagaccatgttcgcacgtatcggttccgtttcgctgtt
aagcgaaatgaagccattctattggttagaagtgattggatagaatggct
tcatttcgttttggAGCGGAACAGAATCGTAGTGTGTGAACGTGGtctaa
aaagaaaatgaagttcGCGTTTTATTCTTCGCTTGTTGATTTTAAGGCCG
TTAATTGTGTGTCTACTTATTTTCATGTAAATAGGTACATAGTTTCATCT
ACTTTTAATATTTAATAATGCTCGTTCTTTTTTCAGGAATTCCCAATGCG
CCAACTTGGAATGATAAAACTATCCTAATACTAAGCTATCCTATCGTGAC
ACAGCCGAAAGGGTGattcaaaaaagtaaacaatatttttaaagaatata
ataatttgtttttgtttagatttttttgtaTGAAATGTATTATTCCAAAT
TTTGTGGACGAATTTTTtacgacaatttttttttaatttttagctatttt
tttttcaaatcttttgtaTTTAAAGAACGATTTAGATGATAcgtagaaaa
ataaaataaataagcttGAATGTTTAGATGATCCATTAATAAATCTTTCT
gagtaaaaatataaaaatcactATCTTTTTATGTACACATCAAAATATat
gtttcaaaaatataaacatttacAAATTATGTTCGGAAAATGTCCGAAAA
TACCAATACTATATTCATAAATTACGTcgcgaacatcacttgcctcgttt
tgaaagtATTGCCATGGTAACTAActcccccgggggggggtactagggca
agatgggttacggggatgctccgctggtcagggtaccttttttaaactcc
acgagtcccaggtagcgtcgcaaaaacaccaaaatagaaaaatcagtccc
tcgtagggtgcctatttttggaaaatttggggaaaaagtagaaaatttga
gaaaattttggaatttcagtcccattcagggtcacttttttcgcaaattt
cgagtcccacgtagggtccaatTTTCGAATCTCAGCGGaacacccccgtc
ggtcgacaagggtagtaccccccccgggctaaCTCCCACGTCCCagttga
ttttattaaaactactttcatttataaaaaaagcttttaataTCTCAAAG
GACATAATAACCattgaaattgtttgaatacgagacaAGTGATGGATAAG
TTGAATTTGATTGCAATTTTGTGTTCGTCGTTGAAAAAGTACCCATGAGA
AGGATATTATCGTATAATGGGTTCATTCAGAAAGTCTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015623TCONS_00015623Clytia hemisphaericatranscript
TCONS_00015624TCONS_00015624Clytia hemisphaericatranscript
TCONS_00015625TCONS_00015625Clytia hemisphaericatranscript
TCONS_00015626TCONS_00015626Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015624-proteinTCONS_00015624-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:390347..400585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35	1.57	1.34	1.28	8.57	7.53	8.93	9.32	7.19	7.09	4.45	3.41	4.41	6.82	4.46	4.47	9.2	10.66	5.26	3.55	3.17	4.42	3.28	3.13	4.13	3.85	5.58	7.05	9.25	8.29