XLOC_008886 (gene) - C. hemisphaerica

Overview
NameXLOC_008886
Unique NameXLOC_008886
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000222:337067..344342+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008886 ID=XLOC_008886|Name=XLOC_008886|organism=Clytia hemisphaerica|type=gene|length=7276bp|location=Sequence derived from alignment at sc0000222:337067..344342+ (Clytia hemisphaerica)
agagaaaatatagaaaatattaataaaaatgaattcaaaaataCCGACTg
gatttcaaaatgaaattgctGGTGTTGTTGATAAGAAGTTGTTTGAATGT
CCAATCTGTCTTTGTATANTGGAATTGCTGGTGTTGTTGATAAGAAGTTG
TTTGAATGTCCAATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCC
ATGTGAACATCTAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataagg
aaattgaaaaagtcaaaaggtttgttttttaattcggtAAAGGTTACACA
GGCACTACATATCAGCTCTattcattacacgtttttttagaacaaactat
ataagaacaaaaggcttcgatggccaaaatattaagaacaagctaagaat
attttaagtttttttgcgGACTCAAAAACATCTGATTTCCtataaaaatg
ggcaaaaatactcacagaatggtgaaaataagaatatttttaggcttaaa
atataaagatttaagaatatccaaaggcttcaaaatttttggatgttctt
ataaaaaaacgtgtatcgatactagtcttatttttttttcaagcctGGAC
GGACGCCAAAACTTTCTTTATTGATCTTACATTAGGGCATATGAGTGATG
CAAGTTGAGCTAGTCTAGTTAGTAAGTTCGGcagtgaaattaaaatgaat
tctaaatttttctcttctttgatATTTTAGCAGAGGATTAGATGAAAAAG
ATGCAGAATTTCTATGTTCGATATGTCAAAAACGTTACCACCGCAATAAG
GTATTCATGTCAATTCGTTTTAAGTGTGCACTTATGTTTGCTTTGCTTTT
CGTTTTCCAAACAATACTTCAAATCTAACAAATCATAtactgttgaaaag
ataattcagagcactAAAATTGTCACagaaaagttattctaaaaaaaatg
agaaaatgaagatgaaaaaaatgaagaagaaaaaaatgaaaagaaactcc
tttttggacctaccacggaggtcctttaaattaactgatgttcgttcatt
cgttcgtctgttaccagcttctCTCGgctcatgattttttgcacagtgat
aaaaaagtgacggagcccgattttcgaaaaaacgatgtttggacaaattt
gggccaaaaagtgtaaaattgcttcattagttttttctatttttttgcat
aaagatagagggcaaggttctctaaaaaatgGCTCAAGcagtttttttgg
aaatttttttttggctgtaaaaatcggattttcttatttggggaaattcc
cttttgctatatttagggaaaatgagcatttctcgaagttagcttggtat
ttttttcttatttttttgttggacttttgggaaaatcaccttTTATcgta
gactatgttatagtctaagacgaattactatctaagaaaaaagcccaaag
ccgaagagaattcgcaaacgggtttttttgccgaaaagagttaacagtca
gtagagttgccagtcttagactatacgattttggcacaaaatacaaaaac
agcccAAATCGTACAAATTCGAGTTTCCGTATGCGAGGCCAACTGTGTTC
ggtattcgaaaaaatcaaaacaaaaaaaaagggGCGGGAGAGAAACCGAG
ATAAAAAAGAGAGTGTAGTTCCAAGAAATATTATAGTTCTCTTTGGAGAC
CCTCTCCCTTTTATTCCCTTTATATATTCTTGGAACTACACTCTCTTTTC
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAAGAAGTATGTTAAAAGCAGTCTTTTAAA
GTCCACAATTGAAATTAAGTActttgtttgacatttttcaaagttgtcaA
AGAACTGCTAACACCAGATgaaaatactttaatgggataaattttcgcgg
ggattaaatttcgcggttgagctcatccgcgaaattttaagattttgcgg
ggattaattttcgagGATGGCACCATTGGGGggcattattttctcgattt
tgtgacttttactgtcaaatcatgcatattggttgttgaaatacacatta
tttgcgcctctttgatgcaagtaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttttcaaatttccaacgggacttattttcgcggatg
acacccaaatccgcgaaatccgcgaaaattaatccccgcgaaaatttatc
ccattaaagtaactaTTTAAGAGATGAGGGTATTCACATATCTAATGAAA
CACTGCCTGTGATTCATAGGATTCATAAGAAATATACAAACTTACTTACC
TACTTAGTTTCTCTGTGTCTTTTTGCTGTATGTAGACttgttgaaaaatc
attttaaaacagcTTCTACAGAAGCATACTTGAGGAATAAGTACTCCCTT
AAACTAAGTTATCTTGTAGTCTCAATAAAACAAGtgaaccaagaagaaaa
aatccataatgagctggattttcacagaaaaaccATAGATCCATCTTGTC
CTTGTGTCTCTTCCCCAGTGACCAGCGTGTTTTTGATCGTTTGAACCAAG
CTCGGCCTTTAAACTTAGGCGATTTTCACCACGGAGCGACTAACCAGTCt
cacggacgataacatcgtctacttTTATCGTCAATAGGGAAATCAcgtta
aaatatttattcacccCAGTATCTACGACTATAAGTCGTCGATATTAACT
TGTCGTCGATAATAATCTGCTCGCTACACTtttttactctcttgctattt
gtcctatttttatctgattctcgtcatcaggtaggtccattcagcatgtt
gcttgtttggtacataaataaaaacaagcgaCTCAGTTTTTCGTCTCTTC
TGCTTTCTAGAGGTTCTAACCTTTGTTTGATGCAAAAACTTTAAAGGAAA
AATAACTAATCTCGGATACCTAATAAACAGAGGAGTTTGGAATACAATAA
GTGGGGTAGCTGAAAAAATTctcaagcggggggggggggggggNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtcagacatagtagaaataaagcaaaaagtaatggtggga
acaattttatacaaactaaatcccgtaacaacaatcgtattatcatataa
cgcctatactactgtgtTACAtgtattataaacgactccagtcaaagcat
aatatttttataatgaaaACAGGTGTAATTATCTTCAAAGCGGATGATAT
CCTCTCCGCTAATCTATCTATTACAATTGTCTGCTTTTCTTCATTTGATA
GCTTTTCACTTTTTCAGAAAGTAGCTGTGAAGTTCATGGACCGGCTGATT
CAAAACGATACTCAATTTAAATGTTTGCAAACGGAATGCAAATGGATTGG
CTCATTAAATGACTACAAGGTATTGTAAAGTtatcttaaaggttttgctt
tcacaaaagtgttcccgtttcatatcagacacatatttcatatcaggaca
gggtctgcctattgttaaagtatgctgatataagcaaaaaatgtttttct
tttcctctttctaaccaatcttgcttcacatccgtgtcaatccaaatgcg
aaaaaagcttgtaaattaaaagtgatgagtaagcaaacgatatcactctt
atttaaaaacaaaacttttaatgcCCAGCTCATTAAATAAAGTTTATTTA
AATATCGGAGAAAAAAgggattaaaatttgaaattatttaactTTCAATC
AATTTCTCTTTCAGGTGCACAAGCGAAAATGTTTCGAGGAGGTAGAATGC
CAATATTCTTCTTTCGGTTGCCGGCAAAAAGTATTTAGTgatgttattta
tttttctattacTCCTCTCACTGGTTTACAACTGGTTATTTTTTTCCGTC
GCCAAAAAAAATAGAATCATGTTTGAAAattagtaagtaagtctgcaacc
gcagtctgaggcgacccgaaggctcctctttagataactatctacccgaa
ggtagggggaGGGCatcactctttctccctggattgctccactgaccctt
gatccttctcttaattgctgagcattaagcagagaggcatcaagtaccat
tttgggaatcttcggtatgacccggctgggggttgaacccacaaccttgg
gAACCGAAgtcggatgctctaccactgcactacgatcgcttgaaaattga
aattacaacaaagtaGAACACTGAAGTACATGTTTTTATATAAGTATAGG
GAAAATTTTGTGAGCTTTATTATGCTTGGCACAATgaattttttgagttt
caaaaattcTTATGTACTGGtgcaatttgcaattttttgcaattttagag
attttaaaaGATGCTTTGAAATTCAGTATATGCTTTAGGCAACCTTCAAG
TGTTATGCTTATTAAAAGATGTGTAGAACAAAACTATCTTTGAGGCGAAA
ACTTGTATTCTGTTAATTTTCACTAGCTGAACAAAGGAAAGGTCAAGAAT
CATAACGAAGAGAATCAAGACCATCACGAGATATTACTTTTAAAGACCGT
ACAAAATTTAGTGGAAGAACGCAGAGAAAACCGACAACTCATCCAAAATT
TGGAACAACATGCCGTTAAAACCGACCAAGAACTAAGTATGCTTAAAACC
gaaaataaagatttagaaTCAAAGGTTGAAAATCACTCAGCTCATCTAAA
ACTTGAACAAATCTTAAATACTATAGAATCTTATCAAGAACTTCAAAAAA
TGGTCATGAATGACAGCACAGAGCTGAAAACAAAGGTTAAGAAACAATCA
GACTTACTCACCAAAATGGAACAAAAATTGTGTGATTCAGATGATAAGCA
acaacaaacattgaaaaacCGAATAACACAATTAGAAAGAGAAAATTCAA
ACCTAAGGCAGAATATTGATCGCCAAAAAGCTCGCATAAATCAGTTGGAA
AGCCAAATGAACAATTATgtgaaaaaatctgaatttgaagaaagtacaga
agaatggaaaaataaGCTGGTGGAAGTCGAGAAAGATGTCATCAACctga
aaatttttgctgaacAAGCTAGTCAACTCCATACTGGTATATGTAATTGG
AACACGATGGATTATTGCAGTGGTATAATTTATCAGAAAAGATATGAGAA
GATACAATCAGTGAAAAGCTGGAgtgaatttgttgaaaaaatttcggCCA
GTGATTATAATGGGAGTTGTGAATACCTTCAAAATATGGTTAGAGCTATT
GCAGATTATAGCAACTACACAATTTATCCTGAGACCTATGCAAGTCGACT
GGAAGTTCTggcaaactcgttagaaaaaggtACACATAGAGAAGATTTTC
TGAAGATAAATACTTGTTATGATTTCAATGAGATATCTGTTGTTTTCCTA
TCTGACGAAGAAGATACTAACTTCATGAAGAAATTATCATCAGAGGGAGA
TGATTGGTACAGACAATCTCCCATTATGGCAACTCGATATGTTGATGAAC
GTTTTGAAATTGCAGTTGAGTTAGGATTTGATCGAGAACATATCTATCTA
CTGCATGACTATGAAGAAAGTGAGAGCGTCAAAATCCCAGTTAATGGAGA
AGCTATTTCGCTTTATGGACCCAGTTACCAGATCCTAAATTCTACATGTA
TAATCTTTGATTTACAAGGAAGAGAAAAACGCATCGGATTATCTTGAGAA
TGATTCATTGATTGGAATCTAACGAGTTCTAGAGTTTTTAATCTGGTTTG
ATTGGCTTTCATAGCGAGAGCCTTGGAAGTGGAAATTTTATGAGAAGACT
TTCTCAAAGTCAATGCCTTTGAGACTTAAGGAAAATATATGTATCTTTGT
ATGAAGGaagtgaaagttttaaaaagcattgaatCGAAAGATGACGTAAC
GTATTACAAAACCGAGGAAGAATATTTGTACGCTACAGTGTGTCTAGAAA
AATCAGAACCGATTTAATATTAAACTAAGTCTTTTTCCTatcccctgctt
attcggactcccccgtctattcggcc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015905TCONS_00015905Clytia hemisphaericatranscript
TCONS_00015906TCONS_00015906Clytia hemisphaericatranscript
TCONS_00015907TCONS_00015907Clytia hemisphaericatranscript
TCONS_00015908TCONS_00015908Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015905-proteinTCONS_00015905-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:337067..344342 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42	1.18	0.31	0.35	2.21	1.65	1.63	1.92	1.65	1.64	2.41	1.65	1.03	1.16	2.01	2.48	1.71	3.01	0.23	0.69	1.82	1.6	2.38	1.87	3.25	4.77	0.7	0.22	1.68	1.49