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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015907 ID=TCONS_00015907|Name=TCONS_00015907|organism=Clytia hemisphaerica|type=transcript|length=2012bp
gaaaatatagaaaatattaataaaaatgaattcaaaaataCCGACTggat
ttcaaaatgaaattgctGGTGTTGTTGATAAGAAGTTGTTTGAATGTCCA
ATCTGTCTTTGTATANTGGAATTGCTGGTGTTGTTGATAAGAAGTTGTTT
GAATGTCCAATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCCATG
TGAACATCTAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataaggaaa
ttgaaaaagtcaaaagAGGATTAGATGAAAAAGATGCAGAATTTCTATGT
TCGATATGTCAAAAACGTTACCACCGCAATAAGAAAGTAGCTGTGAAGTT
CATGGACCGGCTGATTCAAAACGATACTCAATTTAAATGTTTGCAAACGG
AATGCAAATGGATTGGCTCATTAAATGACTACAAGGTGCACAAGCGAAAA
TGTTTCGAGGAGCTGAACAAAGGAAAGGTCAAGAATCATAACGAAGAGAA
TCAAGACCATCACGAGATATTACTTTTAAAGACCGTACAAAATTTAGTGG
AAGAACGCAGAGAAAACCGACAACTCATCCAAAATTTGGAACAACATGCC
GTTAAAACCGACCAAGAACTAAGTATGCTTAAAACCgaaaataaagattt
agaaTCAAAGGTTGAAAATCACTCAGCTCATCTAAAACTTGAACAAATCT
TAAATACTATAGAATCTTATCAAGAACTTCAAAAAATGGTCATGAATGAC
AGCACAGAGCTGAAAACAAAGGTTAAGAAACAATCAGACTTACTCACCAA
AATGGAACAAAAATTGTGTGATTCAGATGATAAGCAacaacaaacattga
aaaacCGAATAACACAATTAGAAAGAGAAAATTCAAACCTAAGGCAGAAT
ATTGATCGCCAAAAAGCTCGCATAAATCAGTTGGAAAGCCAAATGAACAA
TTATgtgaaaaaatctgaatttgaagaaagtacagaagaatggaaaaata
aGCTGGTGGAAGTCGAGAAAGATGTCATCAACctgaaaatttttgctgaa
cAAGCTAGTCAACTCCATACTGGTATATGTAATTGGAACACGATGGATTA
TTGCAGTGGTATAATTTATCAGAAAAGATATGAGAAGATACAATCAGTGA
AAAGCTGGAgtgaatttgttgaaaaaatttcggCCAGTGATTATAATGGG
AGTTGTGAATACCTTCAAAATATGGTTAGAGCTATTGCAGATTATAGCAA
CTACACAATTTATCCTGAGACCTATGCAAGTCGACTGGAAGTTCTggcaa
actcgttagaaaaaggtACACATAGAGAAGATTTTCTGAAGATAAATACT
TGTTATGATTTCAATGAGATATCTGTTGTTTTCCTATCTGACGAAGAAGA
TACTAACTTCATGAAGAAATTATCATCAGAGGGAGATGATTGGTACAGAC
AATCTCCCATTATGGCAACTCGATATGTTGATGAACGTTTTGAAATTGCA
GTTGAGTTAGGATTTGATCGAGAACATATCTATCTACTGCATGACTATGA
AGAAAGTGAGAGCGTCAAAATCCCAGTTAATGGAGAAGCTATTTCGCTTT
ATGGACCCAGTTACCAGATCCTAAATTCTACATGTATAATCTTTGATTTA
CAAGGAAGAGAAAAACGCATCGGATTATCTTGAGAATGATTCATTGATTG
GAATCTAACGAGTTCTAGAGTTTTTAATCTGGTTTGATTGGCTTTCATAG
CGAGAGCCTTGGAAGTGGAAATTTTATGAGAAGACTTTCTCAAAGTCAAT
GCCTTTGAGACTTAAGGAAAATATATGTATCTTTGTATGAAGGaagtgaa
agttttaaaaagcattgaatCGAAAGATGACGTAACGTATTACAAAACCG
AGGAAGAATATTTGTACGCTACAGTGTGTCTAGAAAAATCAGAACCGATT
TAATATTAAACTAAGTCTTTTTCCTatcccctgcttattcggactccccc
gtctattcggcc Run BLAST on NCBI transcript from alignment at sc0000222:337070..344342+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015907 ID=TCONS_00015907|Name=TCONS_00015907|organism=Clytia hemisphaerica|type=transcript|length=7273bp|location=Sequence derived from alignment at sc0000222:337070..344342+ (Clytia hemisphaerica)
gaaaatatagaaaatattaataaaaatgaattcaaaaataCCGACTggat
ttcaaaatgaaattgctGGTGTTGTTGATAAGAAGTTGTTTGAATGTCCA
ATCTGTCTTTGTATANTGGAATTGCTGGTGTTGTTGATAAGAAGTTGTTT
GAATGTCCAATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCCATG
TGAACATCTAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataaggaaa
ttgaaaaagtcaaaaggtttgttttttaattcggtAAAGGTTACACAGGC
ACTACATATCAGCTCTattcattacacgtttttttagaacaaactatata
agaacaaaaggcttcgatggccaaaatattaagaacaagctaagaatatt
ttaagtttttttgcgGACTCAAAAACATCTGATTTCCtataaaaatgggc
aaaaatactcacagaatggtgaaaataagaatatttttaggcttaaaata
taaagatttaagaatatccaaaggcttcaaaatttttggatgttcttata
aaaaaacgtgtatcgatactagtcttatttttttttcaagcctGGACGGA
CGCCAAAACTTTCTTTATTGATCTTACATTAGGGCATATGAGTGATGCAA
GTTGAGCTAGTCTAGTTAGTAAGTTCGGcagtgaaattaaaatgaattct
aaatttttctcttctttgatATTTTAGCAGAGGATTAGATGAAAAAGATG
CAGAATTTCTATGTTCGATATGTCAAAAACGTTACCACCGCAATAAGGTA
TTCATGTCAATTCGTTTTAAGTGTGCACTTATGTTTGCTTTGCTTTTCGT
TTTCCAAACAATACTTCAAATCTAACAAATCATAtactgttgaaaagata
attcagagcactAAAATTGTCACagaaaagttattctaaaaaaaatgaga
aaatgaagatgaaaaaaatgaagaagaaaaaaatgaaaagaaactccttt
ttggacctaccacggaggtcctttaaattaactgatgttcgttcattcgt
tcgtctgttaccagcttctCTCGgctcatgattttttgcacagtgataaa
aaagtgacggagcccgattttcgaaaaaacgatgtttggacaaatttggg
ccaaaaagtgtaaaattgcttcattagttttttctatttttttgcataaa
gatagagggcaaggttctctaaaaaatgGCTCAAGcagtttttttggaaa
tttttttttggctgtaaaaatcggattttcttatttggggaaattccctt
ttgctatatttagggaaaatgagcatttctcgaagttagcttggtatttt
tttcttatttttttgttggacttttgggaaaatcaccttTTATcgtagac
tatgttatagtctaagacgaattactatctaagaaaaaagcccaaagccg
aagagaattcgcaaacgggtttttttgccgaaaagagttaacagtcagta
gagttgccagtcttagactatacgattttggcacaaaatacaaaaacagc
ccAAATCGTACAAATTCGAGTTTCCGTATGCGAGGCCAACTGTGTTCggt
attcgaaaaaatcaaaacaaaaaaaaagggGCGGGAGAGAAACCGAGATA
AAAAAGAGAGTGTAGTTCCAAGAAATATTATAGTTCTCTTTGGAGACCCT
CTCCCTTTTATTCCCTTTATATATTCTTGGAACTACACTCTCTTTTCTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCAAGAAGTATGTTAAAAGCAGTCTTTTAAAGTC
CACAATTGAAATTAAGTActttgtttgacatttttcaaagttgtcaAAGA
ACTGCTAACACCAGATgaaaatactttaatgggataaattttcgcgggga
ttaaatttcgcggttgagctcatccgcgaaattttaagattttgcgggga
ttaattttcgagGATGGCACCATTGGGGggcattattttctcgattttgt
gacttttactgtcaaatcatgcatattggttgttgaaatacacattattt
gcgcctctttgatgcaagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttttcaaatttccaacgggacttattttcgcggatgaca
cccaaatccgcgaaatccgcgaaaattaatccccgcgaaaatttatccca
ttaaagtaactaTTTAAGAGATGAGGGTATTCACATATCTAATGAAACAC
TGCCTGTGATTCATAGGATTCATAAGAAATATACAAACTTACTTACCTAC
TTAGTTTCTCTGTGTCTTTTTGCTGTATGTAGACttgttgaaaaatcatt
ttaaaacagcTTCTACAGAAGCATACTTGAGGAATAAGTACTCCCTTAAA
CTAAGTTATCTTGTAGTCTCAATAAAACAAGtgaaccaagaagaaaaaat
ccataatgagctggattttcacagaaaaaccATAGATCCATCTTGTCCTT
GTGTCTCTTCCCCAGTGACCAGCGTGTTTTTGATCGTTTGAACCAAGCTC
GGCCTTTAAACTTAGGCGATTTTCACCACGGAGCGACTAACCAGTCtcac
ggacgataacatcgtctacttTTATCGTCAATAGGGAAATCAcgttaaaa
tatttattcacccCAGTATCTACGACTATAAGTCGTCGATATTAACTTGT
CGTCGATAATAATCTGCTCGCTACACTtttttactctcttgctatttgtc
ctatttttatctgattctcgtcatcaggtaggtccattcagcatgttgct
tgtttggtacataaataaaaacaagcgaCTCAGTTTTTCGTCTCTTCTGC
TTTCTAGAGGTTCTAACCTTTGTTTGATGCAAAAACTTTAAAGGAAAAAT
AACTAATCTCGGATACCTAATAAACAGAGGAGTTTGGAATACAATAAGTG
GGGTAGCTGAAAAAATTctcaagcggggggggggggggggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtcagacatagtagaaataaagcaaaaagtaatggtgggaaca
attttatacaaactaaatcccgtaacaacaatcgtattatcatataacgc
ctatactactgtgtTACAtgtattataaacgactccagtcaaagcataat
atttttataatgaaaACAGGTGTAATTATCTTCAAAGCGGATGATATCCT
CTCCGCTAATCTATCTATTACAATTGTCTGCTTTTCTTCATTTGATAGCT
TTTCACTTTTTCAGAAAGTAGCTGTGAAGTTCATGGACCGGCTGATTCAA
AACGATACTCAATTTAAATGTTTGCAAACGGAATGCAAATGGATTGGCTC
ATTAAATGACTACAAGGTATTGTAAAGTtatcttaaaggttttgctttca
caaaagtgttcccgtttcatatcagacacatatttcatatcaggacaggg
tctgcctattgttaaagtatgctgatataagcaaaaaatgtttttctttt
cctctttctaaccaatcttgcttcacatccgtgtcaatccaaatgcgaaa
aaagcttgtaaattaaaagtgatgagtaagcaaacgatatcactcttatt
taaaaacaaaacttttaatgcCCAGCTCATTAAATAAAGTTTATTTAAAT
ATCGGAGAAAAAAgggattaaaatttgaaattatttaactTTCAATCAAT
TTCTCTTTCAGGTGCACAAGCGAAAATGTTTCGAGGAGGTAGAATGCCAA
TATTCTTCTTTCGGTTGCCGGCAAAAAGTATTTAGTgatgttatttattt
ttctattacTCCTCTCACTGGTTTACAACTGGTTATTTTTTTCCGTCGCC
AAAAAAAATAGAATCATGTTTGAAAattagtaagtaagtctgcaaccgca
gtctgaggcgacccgaaggctcctctttagataactatctacccgaaggt
agggggaGGGCatcactctttctccctggattgctccactgacccttgat
ccttctcttaattgctgagcattaagcagagaggcatcaagtaccatttt
gggaatcttcggtatgacccggctgggggttgaacccacaaccttgggAA
CCGAAgtcggatgctctaccactgcactacgatcgcttgaaaattgaaat
tacaacaaagtaGAACACTGAAGTACATGTTTTTATATAAGTATAGGGAA
AATTTTGTGAGCTTTATTATGCTTGGCACAATgaattttttgagtttcaa
aaattcTTATGTACTGGtgcaatttgcaattttttgcaattttagagatt
ttaaaaGATGCTTTGAAATTCAGTATATGCTTTAGGCAACCTTCAAGTGT
TATGCTTATTAAAAGATGTGTAGAACAAAACTATCTTTGAGGCGAAAACT
TGTATTCTGTTAATTTTCACTAGCTGAACAAAGGAAAGGTCAAGAATCAT
AACGAAGAGAATCAAGACCATCACGAGATATTACTTTTAAAGACCGTACA
AAATTTAGTGGAAGAACGCAGAGAAAACCGACAACTCATCCAAAATTTGG
AACAACATGCCGTTAAAACCGACCAAGAACTAAGTATGCTTAAAACCgaa
aataaagatttagaaTCAAAGGTTGAAAATCACTCAGCTCATCTAAAACT
TGAACAAATCTTAAATACTATAGAATCTTATCAAGAACTTCAAAAAATGG
TCATGAATGACAGCACAGAGCTGAAAACAAAGGTTAAGAAACAATCAGAC
TTACTCACCAAAATGGAACAAAAATTGTGTGATTCAGATGATAAGCAaca
acaaacattgaaaaacCGAATAACACAATTAGAAAGAGAAAATTCAAACC
TAAGGCAGAATATTGATCGCCAAAAAGCTCGCATAAATCAGTTGGAAAGC
CAAATGAACAATTATgtgaaaaaatctgaatttgaagaaagtacagaaga
atggaaaaataaGCTGGTGGAAGTCGAGAAAGATGTCATCAACctgaaaa
tttttgctgaacAAGCTAGTCAACTCCATACTGGTATATGTAATTGGAAC
ACGATGGATTATTGCAGTGGTATAATTTATCAGAAAAGATATGAGAAGAT
ACAATCAGTGAAAAGCTGGAgtgaatttgttgaaaaaatttcggCCAGTG
ATTATAATGGGAGTTGTGAATACCTTCAAAATATGGTTAGAGCTATTGCA
GATTATAGCAACTACACAATTTATCCTGAGACCTATGCAAGTCGACTGGA
AGTTCTggcaaactcgttagaaaaaggtACACATAGAGAAGATTTTCTGA
AGATAAATACTTGTTATGATTTCAATGAGATATCTGTTGTTTTCCTATCT
GACGAAGAAGATACTAACTTCATGAAGAAATTATCATCAGAGGGAGATGA
TTGGTACAGACAATCTCCCATTATGGCAACTCGATATGTTGATGAACGTT
TTGAAATTGCAGTTGAGTTAGGATTTGATCGAGAACATATCTATCTACTG
CATGACTATGAAGAAAGTGAGAGCGTCAAAATCCCAGTTAATGGAGAAGC
TATTTCGCTTTATGGACCCAGTTACCAGATCCTAAATTCTACATGTATAA
TCTTTGATTTACAAGGAAGAGAAAAACGCATCGGATTATCTTGAGAATGA
TTCATTGATTGGAATCTAACGAGTTCTAGAGTTTTTAATCTGGTTTGATT
GGCTTTCATAGCGAGAGCCTTGGAAGTGGAAATTTTATGAGAAGACTTTC
TCAAAGTCAATGCCTTTGAGACTTAAGGAAAATATATGTATCTTTGTATG
AAGGaagtgaaagttttaaaaagcattgaatCGAAAGATGACGTAACGTA
TTACAAAACCGAGGAAGAATATTTGTACGCTACAGTGTGTCTAGAAAAAT
CAGAACCGATTTAATATTAAACTAAGTCTTTTTCCTatcccctgcttatt
cggactcccccgtctattcggcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015907-exon-sc0000222-1491911889:337070..337335 | TCONS_00015907-exon-sc0000222-1491911889:337070..337335 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1510915933:337070..337335 | TCONS_00015907-exon-sc0000222-1510915933:337070..337335 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1575043694:337070..337335 | TCONS_00015907-exon-sc0000222-1575043694:337070..337335 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1491911889:337800..337866 | TCONS_00015907-exon-sc0000222-1491911889:337800..337866 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1510915933:337800..337866 | TCONS_00015907-exon-sc0000222-1510915933:337800..337866 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1575043694:337800..337866 | TCONS_00015907-exon-sc0000222-1575043694:337800..337866 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1491911889:341634..341735 | TCONS_00015907-exon-sc0000222-1491911889:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1510915933:341634..341735 | TCONS_00015907-exon-sc0000222-1510915933:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1575043694:341634..341735 | TCONS_00015907-exon-sc0000222-1575043694:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1491911889:342081..342107 | TCONS_00015907-exon-sc0000222-1491911889:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1510915933:342081..342107 | TCONS_00015907-exon-sc0000222-1510915933:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1575043694:342081..342107 | TCONS_00015907-exon-sc0000222-1575043694:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1491911889:342793..344342 | TCONS_00015907-exon-sc0000222-1491911889:342793..344342 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1510915933:342793..344342 | TCONS_00015907-exon-sc0000222-1510915933:342793..344342 | Clytia hemisphaerica | exon |
| TCONS_00015907-exon-sc0000222-1575043694:342793..344342 | TCONS_00015907-exon-sc0000222-1575043694:342793..344342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:337070..344342 + |
Blast
The following BLAST results are available for this feature:
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