XLOC_009727 (gene) - C. hemisphaerica

Overview
NameXLOC_009727
Unique NameXLOC_009727
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000266:351869..356641+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009727 ID=XLOC_009727|Name=XLOC_009727|organism=Clytia hemisphaerica|type=gene|length=4773bp|location=Sequence derived from alignment at sc0000266:351869..356641+ (Clytia hemisphaerica)
gaatacccagTAGGGtgagttttatattttatattttatatttggttaac agaaaaaaagcttcttcctttgttagacttaaaaattaaactttgAGGCA AAACTGGAATTTTAGTTCCAAATGTTCATTTAAAAGTGCATCCAAAAACA TTTCCGAAATCTCATTCAATGCTCTCCGATTCACGGATGAGAATGTGGAA GAATTTTGCCAGATTGTCTTACCAAAGAAGTGTCGAGTGTCTTTTACACA TGTCATGAGAGATCCAGACGACCATTACCACGTTGAAACTGAAACAGATG AGAGTGATTATGGGTACACAGTCCCTTGGGAAATATTTCGCGCTCACAAA TTCACTATACGAGACATCGAGACTTTTGTTTGATATGATATCAAGATCTC TTTCATACCAAGTAGTGTTTTGATGTACCAGCTagacatttcaaatttta tgaagTTTATCCCTGCGCTGCACAGAGTTGTTTTTAATGTTAAGACCAAT CAGGTAGTTTCTAGAAAAACTGCttttaagttttgttaaaaatttgaaat aattttgtttaCATACACGTTTTTTTTTATATAAGGAACCTTAACTTTGC TCTgagcctggagttccttatttttacagaaaatttcagcctcaaagttc cttttgagttccttatttacatagctagTTCAAGTGAAAACTCTTACTTT TACTGTTCCTCagaacttgttttcttattcttagcctgagcagttcctta acaattccttattttttggactactttcagcctcgagttccttataaacg tgttccttataaaaaaaaaacgtgtatgttatTTTGCTAatcaagaattt ttttgtttaacaaagaaagtaaataaaaaaaggaaaattgacggaaaaac aaaaatgaaaaatgctaaGTAACCATAATCAAATCAACTGAATTTGACGC AAACAAGAGCAAAAAATGGTAAGTTCCCCTAACTTTCATTTCAAtcaatt tgaattttcaagtgcAGTGTAGAAAATTAAATGGGGTTTGAGGGTTTTGA ATAGTACAACTTTGTGGATTGCcaattttttctcttattttctttctttc gaaATGTTCCACTTAGGAGTACCTTTCCCACAACAATCATATCAAACaac caatatttatatttttttccgatttccttcaaaaaaatattccaCTTTGG AGTACCTTTTCAACAGCACTAGTTCCATACTAAACAACTTTTTAATTACC TTAGGGTAAAgcaaagaaatcaagaaagttTGCAGCCGTCAAACGGATGA TCAACCCAAAAGATCAACGAATGTAAGACCTTAACTGTACActattttta tataagaacaatttcataagaatgaTGAGGCTCAGAATcgtaagaacaat ttaagaacaatgctgggCCTGAATTTACtcaattttaagcaatttaagcT TGGTCCTCACTTGTGCAAAAAACCGCGTTTAAGTGTGTCTAAGTGCGTTT AAGTGCGTCGAACACACTTTTGCTTTCTAGTGAGTACGTTCGCTAAACGC ACTTAAGCGCACTTAGACGCACATAAACGTCTTTATTTTGCTAGGCGCAC TTAAACGCGAATATCAAAGTGTAAACACTATTCAgtccttttgaaatttg aagagAGAGGGGGATTTCTTCATCGTGTTTAAGTGCGCCTCTGGTTGGTA GAGGAGTCAGCCTTATCAAGGACTTTTCCcgttttaatttttcagaaaag caaatcaagaaaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAACAAA GTTCGCCGAGTGTAAGAATCAACATAGCCATGTCATTTTTTGGTAGTTTT CATTCATAACTACACTTTAGCCTGAACTCtagtttttgctattttctccA CTCGCTCAATTTGTGCaggaaaaagtttttggctgaattcacggtgaaaa gctgcaacagttcaataataaattatatcattgaagtttttcaccttgAA TTCACCCAATATcacccaaaagatttttttttacttttcctaGACCGAGG AGGTTGACGCAGCACTTCATTTTCCATCTAAaccaaacttttattttttt ttttacagggAGCAATCATCTTCAGCATTGTTTTTCCAATACAACACACA ACTAGGCCCTCCGTACAGAGTGCTGGTGGACAccaatttcatcaattttt caattcaacaCAAATTAGATATCTTTCAATCCATGGTAGATTGTCTTTAC GCAAAATGTGAGTTTGTAAAACACATATTTCCTATTAGtggattcatgta aaaaagtcacgaaaaacgtcgagaaagtctctgattggctaaaatatTGC ACATACaagcatattttttcaaaatatccagagtatgaggtaatctttaC ATGCCTCCGCgaatcaaaagtttgtttactcgacgttttttcgtcacttt tgtatgaatctgctaataggaaatatgTGTATTCTCAATTGACTTTACCT GAGATATTTTCCTTCCCATCTCCTTATGAGGGTCTATGAGGTTTTCTCCA TCTCCATCGAACCGTTAAAATAAGCTTATTATAACTTTCCGCATCTATGC TTACATCTGCGAATTAACATCAATTTGCTTACCCCATATTAAAACAAGAG AAAGAACATTCTCTCCTTTTTGGCGCTGCGCCAGcacaaattttaagaaa tcCTTTTTGTTTATTCTGCTATGTCAGCATAGAGGCGCGCCTCTTTTCTA TGCCATAAAGAAGAATATCTTTAAAGAAGAAATTAACGATGGTCTTAAAC TTCTTTTATTATCCCCTGTAAACAGGTATCCCCTACATCACAGATTGTGT GATGGCTGAAATCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAGGT AAGCATTTATTGATATCGTGATGAGAAATTCTATTTCACTTATGGCTAAA CAAGTTTCTTGGGCTAAATTAACCCAAAGTCAGATAAAAGGTAAGATCTT GTCACTAATAATAATTAATAGTTAATAATCATTCTGTACTTTATACATTT TTTCGTAGAGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGCA CAAAGGGACGTATGCCGATGACTGTCTTGTTAACCGAATTTCACAGGTAA AAATGATGTCATCCTTTGGAGCCAGGGAGCTaatagagtctctttaactc taacctctataacttgaatgtctcCACAACTTGAAAAAGTTTTCTCGTCC ATTCAGttgaaaatgctttaaaaatcttactccgtaactcgaaattcttt aactcgaacaaatttgtgctcCCCTTACGGGTTCGAGTTTATAAAGATTC CAATGTACCTTTATATGTGGTTGTTGAAAAGggattttcattatttcatt ttcagcaCAAATGTTACATCGTGGCGACgtgtgatcgtgatttgaaaagG AGGATACGAAAAGTTCCTGGAATCCCTATCATGTATTTGTCCAAACATAA GTAAGATATTCTTCAGAAGTGAAAATTCATTCATCATTTTATAACTGAGA TTACAAGGAGAATCCGGCATACAGACATTTTCTAATGGTGGTACTGGACG CTACTGCCACCTCCAAAGCCTCCCCCACCTTCATAACTCTATCTTTCAAA TGATCAACGACCCAGAATGTTtaattgcttttttttatttttttttttca gatataGCATTGAACGAATGCCGGACGCTTTCGGAGGTAAGTTTCATTCT CGGAAATTTTTTCTCAACTGCAAACCTCAACTGTAtcataccgggtgcgc cacaaaaaattttctctcttttaaactaaatttctcgaaatctaaaattt ttaaaagaaccatttctatttcattggaaagaagaaagataaacttaaat tttgatgcgtcatttattaaattcgaatcattagatcaaaagttatgttc aattgAACAAAAAAGTTACTTTCAAAAAGTGcttgaaaacgttaaaaata gacctatcaaattaaacagaagcataattacatgatacatcagtattttc gaatcagtcattaaaaaatgataattagctttCGAAATaatcttttgtta tataaaggaaggttgaatttcaataaaaggaagaaaattcgtcgaaaaag gccaaaaaatctggtaaaattctttatacatcaaatatgggtttcgaggt taatccagccttacatagactttttCCGGTCTataaccaaaaatctgagg aaaatttaggtaaaagtaaattaaatttattttgatgaatATTTTAAACT CTTGttgacccttcagtttcaaaatttatgtgttctTAATCATGTAAGGG CTTTTGCGACTACCAAATTTTAAATAcaaatttgataggtcaattttcaa cgtttccgagcactttctgaaagtaacttttttattcaattgagcataac tttcgatctaatgaaccgaatttaataaatgacccatcaaaatttaagtt tatcttttttctttccaatgaaatgggagtggttcttttaaaatttttgg attttgagaaatttagtttcaaagagagaaacttttttgtggcgcacccg gtatcaaATTTTTAACTGAAATTTTAATGACCCATAGAATGAAATTAACC TATTGACATCTTTCTTTTTCAgctccaaaaaattaaaatcaccaACAAAA GACagattttatatttatttttactggattttttaaaggaaatacatttt taacaatCGATGCcataataaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017375TCONS_00017375Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017375-proteinTCONS_00017375-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:351869..356641 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
FCF1rRNA-processing protein FCF1 homolog Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
103.11 102.88 128 140.67 110.92 87.2 57.96 64.33 45.29 49.71 42.39 44.43 42.12 44.74 45.25 55.3 45.42 46.81 43.42 39.77 35.46 32.04 64.5 52 44.47 51.78 41.13 37.91 47.02 44.45