XLOC_011280 (gene) - C. hemisphaerica

Overview
NameXLOC_011280
Unique NameXLOC_011280
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000348:194568..202763-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011280 ID=XLOC_011280|Name=XLOC_011280|organism=Clytia hemisphaerica|type=gene|length=8196bp|location=Sequence derived from alignment at sc0000348:194568..202763- (Clytia hemisphaerica)
CATAATATCAAAAATTTGCCCTGATCTAAGGGGTGCCCTACAAAGTAACA
CAATTCACTACCTCAGTCGCTGGTCTATAAGTCAGAACAATGGTGAAAAT
CAAATATTTGCATCTCTGTCTAGTATATTAGGTAACTTTAATTGACCTCA
TTCTTCAAATTCGAAAAAAGTACAGCTCAAATTAGATTTATTGTAGATAT
CTATTCACAATGGTGCTCAAGCAAAAAATATTTGTTTTTTATATTTACAA
GAGAAACTAAAAATAAAATAATATTTCAATAAAAACTTTTATCTCGCATA
TTGATAAAACTATCCAAGATCTTTTTTCCATAATAAAAACAAAAACCTCC
CTGAAAAAATTTGTATATCATTATCATTATCACCAAGCTGCCCAAGCAGG
CCCAAGAAAAGTTGTGATGACAGGAAACATTTTTTTCCAAGGGAGGTGAG
GCTACAGTTTCAGCAATACTACGATGCCATTGCCAACAAAATTAAATTAG
AATTTTAACAAAACTAAACAGTATTTAAAAGTTTGATTAGTTTGAAAATC
TTCAGAAACAATTACAAATATAAGGATATTATAAAATAAATTTCCCAAAC
TATGTCAATCAGCTATTGAATCAAAGCATAATTCTTCTTTGTCACTAAAA
TTTGATTGTTGAATGCAACCTAATTTGAATACTGTCAAACTAACTTTCAT
TACAAAACATCTTTCAACAGTCAACAGAATGTCACCTGTGAATGGGAGTA
GTGGTGAATGGTACATTGCTGGTTTTTAGAACGGTGACAGTCTAACTTTC
ATACCGTGAAGTCAGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCC
CTCAGATGAGACCAATCAAAGCAGCAAAATTTCTAAATAAATGAACTACG
CAGCTCAGGTCGCAGCTCTACTCCACCATTTTTATTTTTATTTAACTTTG
TATTTTAAGGACCAGCCAGGTCATTCATTCGAGGGCTATGCATGTTAGCC
TTCACTGATGCAAGTTACCTGCCTTCACAGTATTTTGTTGCAAACACCAA
ACAAGATTTTCTATTTCTTTGTCTGACATAAAACACAATCTATTAACATA
GAAAGGAATCTGACAGCAAAATTGCAATTTAATCTATCAACCTTTTGACA
TCAGTAATTGTCTGTTAATAAATTTTGCCCTTTACTTCCTTCCATATGGA
GCCTAGGACTTTTCATTTTCAAATTTTTAGTGGTATTTCCCATTTAAGGT
TCAGCTACTCTCCTTTTTCTTTATTTTAGAGAACTTTCTTTGGAAGATAA
GTATGTTATTGTGCTATTCTTTGTGTTTGGTTCCAATCTTTCAAAAGGCA
AGGTCAAGTTCTGATAAACTTGGATTATGAGTTTTTGATATACTACGTAG
CAGTTATATCTTGGGGTTCTGTCTGTTGGTTGCGCTTCTAAAAGTGAATA
CATACAGTGTCCCCAGCCGTGTCAACATCCACTAGAATTGTTTTCCTATT
AATTTATCTTTTTTAGTAGAACCTCACCTCAGAGTGTCTTGCTTGATGAC
ACAATATCATGTGCAATTCAGGTAAAAATGAAACCACATGAAACCAAACC
TGGCCATGGGGAATACTATCATTCCATTCGAAAATCCAGACAGTTGACAC
AAAAAACTGCATCTTCANTATCATTCCATTCGAAAATCCAAACAGTTGAC
ACAAAAAACTGCATCTTCAAAATGACCATATTTCATCTCACAACAACTGG
GGCAAAAGATAAATTGACAATTTGTGCAGATATTGCTGCATGTATTGTGG
CAAATGTTTTTATTACAGTAAGAGCAAGTGTTCAGATTGTCTATCATCAC
CTTGTTGGTGTCAGAATTGTTGTTTCTTGAAACCATATCGTTATGTTTAC
AAAAGTAACACCCAGACTTCTCCTTGAGAACTTTGAATACAGGGCCAATG
TTAATCTTACCCCTGTGAGATTCTGTTTTCTTTTGTTCTTGCATTTGTTG
TGATTTTAATTCTTCACGTCTTGCTTGTCTGGCTCCATCAAGAAGCATTT
TAGTGGTTTTGTGATGAACTTCCTTGACATATTCCTCCTTACCAACATGA
CGCATATCGATATGAGCTTTTACTAAAGGTTCACTACCATTAAATGGACA
CAATCGCTTGGGCATGATACGCAGATTGAGTAAAAAATATCACGATTTAT
CACCAAAAGTTGACCAAAATTTCGCGCGCGAAACGTGAGCTAGAATGTGG
AAGTTCGAAGTGTTGTTTTTATTTTGAAAAGTCCACACCAAGTAGTCAGT
GGACCACAATTTTCTAGATCTTTTAATTGTAAGCAACATCAGAAGGAAAA
CTGACATGCGAAAAATTGAGTGTGATTGTTAACTGAAAGAGGAAATTACT
TCAAAGTATAGCTTTCAGTTTTCAAGCAAATGCGATAAAAGAGTAAAGTG
TTTTCTTCAAGCAGAAAAACAAAAGTCGATTATGGTTTTGAAAACAAATC
CCTTTAAATTTTAAAGCCATACTTTCAAAGTATTTCACTGAAGAATTCGA
TGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCACGATGG
ACGCTAAAGGTTTTTTCTTTTTTTTCTTTTTCTATTTTTACTGAACTATT
TATAATTAATGGAGAAATTTTTGAATTTCTCCTTTCTCTAATCATATCAT
ATTCTACCATAGACTCCTTTTTTTATTTGGTATATAATCATTGGCTAGTT
CAAATGCAGGTTTCACAGTCCACTACAACAGAAGAGGTCACAGACACATG
TCAACAGGTCACGGTATTTGACACAGGTCATCTTTAATTACTGTAAACTA
CAAAGGAAAATGTACTATGAAAAACACACCTTTAAACAGCCTCCTGGACA
TAACCTGAGATTAGATCGTGATTGTTTTCTGCTGACCACGCTGAATAGGA
CCCTGCCGACGCACCGGACTGTCAGGTGTATTTGTCCGGTGGCAAAAAGT
ATCCTTTCGCTACACCAGACGCAATAAGTCCGGTGTCAGTCCGGTGTTGC
ATACAGGTAATTTTGGACACCGGACATTTATGAAACAAAAAATTAAGAAA
CACCGGATGCACCGGACTGGTCATGTCCAGTGTTTAGATTGTCCGGTGAA
AAAAAATATCCTTCTCCAACACCGGACATCCGACTGACGGAGAGTAATGT
ATGTGGATTAATTTGTTATTCAATAGGCCGTTGCATTCTCCAAAACAACT
ATTTAGTTATCGACTTTCCAGTGCACAACAAGATTCTTGTTGTAGAATTT
TCCTTGGGAGGACTATTTTCAAGCACCTTTTAGAGGTTTACCATGCGCAT
TAGAAAATCATGAACAGTTGTTATCAGGTTACCTGGACAAGAAAATAGCT
GTTTCATAAGTGCTTTATCATATCCCATTACATCTCCTGCATCACCTTGG
GTATGATAACCGGACTTGATGAAAATAGCATCAAAAGGATTATATTTTAT
AGATATTTGTTTGTTTGACCTGTGTCCATGACCTTTGGCCTGCGTCTCGA
ACTAGCCAGTATAACATTTGACTGCATAAATATAACAGTAAAGCATACTA
GATTATTGCTTCTAATCCAGCTGATTGAAGGTTCTGGAAGGTTGGGTAAT
TTTCCAAAATTTGAATACAAAAGCCAAATGGACCTCCTTTAATACAACCC
ACAAAATGGCCTTACTATAGTCCTTGGTTTAGGGCCGAGTTTGGCCCAAA
ATAGCAAAACATTCTTTTTGCCTAAAAACATTGATGTTCAGGCCAATTTT
GGACCATCATAATAGGTGCATCATAAGAAGACAATCAAAGTCCACACTGT
AACAGGCTGCTATTCAGCAATGAGGAACAATCAAAAGTGGTTCATGTCAC
TTAAAATAATAGGACTTGCCTTAACTCACCTGAGGTATCTATATTAGATC
ATAGTATTCTAAGAGTCGCAGTATGCTAAGTGGTGATGTGGTAGTATGTT
AAGAGCATTACAATTTTCTCAGTGACAAATATCTTTACAGTGTTTGATTT
AGATGTCTTTTTTATTTAGATGACATCCAGTCAATTATGTGCAGTAGATT
CTTTTAAGAAATGATTTTACTTCAGTTTGTGTTATCATCAACATACATTA
GCATATGTTTTTAGCAAAGAAATTAACCCAGGTGGGAATATCGTTCACAC
TCCAAGGTATTGAATGATTTACTCACTTCTCATGTGTCATACCCTCCAAC
AAGTTCCCTAAAATATAGTTCTAAAGATCTTTCTCTTTCTTCAAACAGCG
ACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATGAAGAAATTTC
TCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTTAACGAGTTTT
CTAAGGTAAATACTAAAGTACCATGAAAATGATATTTCTTTGAAATTTGT
AACTCTTTGCCTTGCTCAAATAACTTTGTCAATTAGTTTCCTGCAATAAC
AAGATGGTCAATATTTCCACATTAACAACCATAGCCATCGAATGAGGGGC
CAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACGAA
GATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTTGT
CTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTCTG
TTACTATTCAAGAACAGAAACAAACTTTTGAATCGTAAGTGAGACACGGC
TTCAAAACTTCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAGATTACAAAGCAAACTCTCTGCGGCATGAAAT
TTTATGCTTTCTACACATTTGGTGACCTTATTCTCGCTAACTTTGAGCTT
GCTTAGAGCAAAAATTTACTCTGAAAAAACTTTCTCTGAAAGTTTCCCCT
AAAAAAGGTCAAAATTTTTCCAATCTCGCCCCCCCCCCGAAACGAAAACT
CGTGGCTACGCCTCTGCTAGGCTTTACTCAATCCATCTCGATGAACAATG
TCGCAAATTTTTCTTGATCGCTTCGCTCGCATTTTCGGGCGCCAGAATAA
GCCTACAAGCCAAAATTTTACTTACAGTTTTACACGCTACAGTTTGGTAA
TTGTTATAGAGAATTTTGGATGATGAAAAACGCGACCTTTATCGTCCACA
CATACCAAGCACCCATTTTTGCCTAAGTACTCCCTCCGGGGGACGAGTAC
CTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAAACAATT
ATCGGTATATCGGTAATTGAGAGAAAAAGTGATCGGTATATCGGTATTAC
GAAGTCCCGTACGCCCCCCACTTCAGAGTGATTTGTTCTATTGTTGAAAT
GTTGACACAATGTTGATATTTGAGAAAAATATTGATATCAAGACAAAAAC
ATTCAAAATATTTATTATACCGAAAGTGATGTAGATAGTGTGAATGGATA
TAAAAAGACACGAATCAGAAGCTTGTGACTTCTGTTTTAGATTGATGGCA
CATGAGGCCCGAGTTACATTGAAGAGTTACATTTAGGAGCGTTCCAGTTG
CTANTTTTGGAGTATTGAGATGAAATCAAAGTCATTTTCCCAGTGGTGCT
GAAATTCCAGGGTATGAAATTTTTGCCAAATTGTCCATTGGGGCTTGGGT
CCCAGTGGGTCTGTGACACAGGGGTGTTTGTATATACGACTTCTAAAAAT
CTTGTCTGTAATTTAATCTCACAAATCTTCTCCGTCATTTCTTTAAATTT
TTAGGCCATTTCACAGAGGAATTTGTAAGTATTGTCTTTTTGTTTCGTTT
TTTTTTTCTCATGTCTTTTCCGTGCCGATACTCACAGCGATCCGCCAATG
CAATACAGTGGATGTTGACCTTTAAAAACAACTTAATAAGCTTTAGAATA
TTTTTAAAATATTTTAAAATATCTTTCCAACTATACCAAACCTTTTATTA
TATATACCACAAATACTTGAAAGTTATGGTAAAAAAACACTGCACACCTT
TTTGCTCGGGAGGGGGCACTTAGACAAATTTTATAAAAAGAACGATGTCG
ATAGCTGAATGCTATGGGTGACTTTAACTTCATTAAAAAGAAGTATGGTA
TGGTTATAACTCTGGGTCAAAAATAGATTTTAAGATTGCAATTCTATCAA
AATGAAATCCAGTAAGTTTTATTCCACTCTGGCTGAAAAGAACTTCTGAC
AAAAAATGGAAAAATTTTTCTTATGTTTTTGCTGAAGGTGAACCTTATGT
TTTTATAAAATATGTTTGTTGTTTCAGGGGAGAGGAATTTCGCCCTTCGA
CTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTATTTTTAGTAA
ACTCAAAAATGTCATTCCCCATGCAAACCGCGCTCAACAACATTCGCAGG
TAAGTAAGTTAGAGATTAATCGCTGTTGTCTCAAAACAATCACATAGTCA
TTATTTTCATGTTCTTAGCTTAATATAATGGGGTAAAATTCTGAGAAGAT
TCATTTTTGCAATTTTCTCCGATTTTGGCTTTCTTCACAAAATCCGAATT
CAAATGGAATTTTGAAAAACACTTTCACGTCTTGCAGCCTCATTTTGTTT
AGGTAAATTCATTTTTGAGCCTCAAATATGCTTACTCTCAGGTACCTAAT
AACCGTCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAAGACATT
GTTGCTCCAACCCCTCCCCCTCCCCGCTTATTAATTTTTGGGAAAATGTT
TTTGAAAGTTCCCTCTTTCGTCCTAGTTCTGCTGTATTAGCCTCCTTTTC
AAAAATTTTTCACCCAGGACATTTTTATTCCAACCCCCCTGCTATTAGGC
ACCCGAGAGTACGCAACGACGTAATTATTACATGTCAACATAAAGTTTCT
TCTGGAAAAACAAATTATACTGAAATGCAAATTTTTAACGAATTCAGGAG
ACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAATAAACGA
TCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGAAAACTT
CCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCTTCTGTTTTTTG
AGAGGATTTCTTGTAGAGAATTTTGTAAATTTTTCTTATTTTTTGTAATT
TATAATCTTGAATTTAATTGAGAAATAGATGAAGATTAAAGATAAAAGAT
ACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAAATCAGCTGACA
TCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGACAAATTATTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00020066TCONS_00020066Clytia hemisphaericatranscript
TCONS_00020065TCONS_00020065Clytia hemisphaericatranscript
TCONS_00020064TCONS_00020064Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00020066-proteinTCONS_00020066-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:194568..202763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
234.03	233.99	123.49	110.21	8.24	6.43	24.74	22.63	42.68	31.01	30.87	35.54	31.72	30.96	36.46	36.89	47.91	45.47	25.43	23.55	40.53	37.16	95.25	84.46	25.43	29.56	28.83	22.48	48.09	45.85